Differentiation among potyviruses infecting sweet potato based on genus-and virus-specific reverse transcription polymerase chain reaction

Plant Disease

Volumn 82, Issue 2, 1998, Pages 223-229

  Colinet, D ^a   Nguyen, M ^a   Kummert, J ^a   Lepoivre, P ^a   Xia, Feng Zu ^b  

^a UNIVERSITY OF LIÈGE   (Belgium)

^b Upland Crops Research Institute   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; IPOMOEA BATATAS; POTATO LATENT VIRUS; POTYVIRUS; SOLANUM TUBEROSUM; SPINACH LATENT VIRUS; SWEET POTATO FEATHERY MOTTLE VIRUS; SWEET POTATO G VIRUS; SWEET POTATO LATENT VIRUS; SWEET POTATO VIRUS G;

EID: 0031886650     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS.1998.82.2.223     Document Type: Article

References (23)

1. Abad, J. A., Conkling, M. A., and Moyer, J. W. 1992. Comparison of the capsid protein cistron from serologically distinct strains of sweet potato feathery mottle virus (SPFMV). Arch. Virol. 126:147-157.
2. Badge, J., Brunt, A., Carson, R., Dagless, E., Karamagioli, M., Phillips, S., Seal, S., Turner, R., and Foster, G. D. 1996, A carlavirusspecific PCR primer and partial nucleotide sequence provides further evidence for the recognition of cowpea mild mottle virus as a whitefly transmitted carlavirus. Eur. J. Plant Pathol. 102:305-310.
3. Chomczynski, P., and Sacchi, N. 1987. Single-step method of RNA isolation by acid guanidium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162:156-159.
4. Clark, C. A., and Moyer, J. W. 1988. Compendium of sweet potato diseases. APS Press. The American Phytopathological Society, St. Paul, MN.
5. Colinet, D., and Kummert, J. 1993. Identification of a sweet potato feathery mottle virus isolate from China (SPFMV-CH) by the polymerase chain reaction with degenerate primers. J. Virol. Methods 45:149-159.
6. Colinet, D., Kummert, J. and Lepoivre, P. 1994. The complete nucleotide sequences of the coat protein cistron and the 3' non-coding region of a newly-identified potyvirus infect- ing sweet potato, as compared to those of sweet potato feathery mottle virus. Arch. Virol. 139:327-336.
7. Colinet, D., Kummert, J., and Lepoivre, P. 1997. Evidence for the assignment of two strains of SPLV to the genus Potyvirus based on coat protein and 3' non-coding region sequence data. Virus Res. 49:91-100.
8. Colinet, D., Kummert, J., Lepoivre, P., and Semal, J. 1994. Identification of distinct potyviruses in mildly infected sweetpotato by the polymerase chain reaction with degenerate primers. Phytopathology 84:65-69.
9. Devereux, J., Haeberli, P., and Smithies, O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
10. FAO (Food and Agriculture Organization) 1994. Production Yearbook, Rome, Italy.
11. Frohman, M. A. 1990. RACE: Rapid amplification of cDNA ends. Pages 28-38 in: PCR protocols: A guide to methods and applications. M. A. Innis, D. H. Gelfand, J. J. Sninsky, and T. J. White, eds. Academic Press, San Diego.
12. Langeveld, S. A., Dore, J. M., Memelink, J., Derks, A. F. L. M, van der Vlugt, C. I. M., Asjes, C. J., and Bol, J. F. 1991. Identification of potyviruses using the polymerase chain reaction with degenerate primers. J. Gen. Virol. 72:1531-1541.
13. Mon, M., Sakai, J., Kimura, T., Usugi, T., Hayashi, T., Hanada, K., and Nishiguchi, M. 1995. Nucleotide sequence analysis of two nuclear inclusion body and coat protein genes of a sweetpotato feathery mottle virus severe strain (SPFMV-S) genomic RNA. Arch. Virol. 140:1473-1482.
14. Mori, M., Usugi, T., Hayashi, T., and Nishiguchi, M. 1994. Nucleotide sequence at the 3'-terminal region of sweetpotato feathery mottle virus (ordinary strain, SPFMV-O) RNA. Biosci. Biotech. Biochem. 58:965-967.
15. Moyer, J. W., and Salazar, L. F. 1989. Virus and virus-like diseases of sweet potato. Plant Dis. 73:451-455.
16. Pappu, S. S., Brand, R., Pappu, H. R., Rybicki, E. P., Gough, K. H., Frenkel, M. J., and Niblett, C. L. 1993. A polymerase chain reaction method adapted for selective amplification and cloning of 3' sequences of potyviral genomes: Application to dasheen mosaic vi- rus. J. Virol. Methods 41:9-20.
17. Robertson, N. L., French, R., and Gray, S. M. 1991. Use of group-specific primers and the polyraerase chain reaction for the detection and identification of luteovinises. J. Gen. Virol. 72:1473-1477.
18. Rojas, M. R., Gilbertson, R. L., Russell, D. R., and Maxwell, D. R 1993. Use of degenerate primers in the poiymerase chain reaction to detect whitefly transmitted geminiviruses. Plant Dis. 77:340-347.
19. Rybicki, E. P., and Hughes, F. L. 1990. Detection and typing of maize streak virus and other distantly related geminiviruses of grasses by poiymerase chain reaction amplification of a conserved viral sequence. J. Gen. Virol. 71:2519-2526.
20. Rybicki, E, P., and Shukla, D. D. 1992. Coat protein phylogeny and systematics of potyviruses. Pages 139-170 in: Potyvirus taxonomy (Arch. Virol. [Suppl 5]). O. W. Bamett, ed. Springer, New York.
21. Shukla, D. D., and Ward, C. W. 1989. Identification and classification of potyviruses on the basis of coat protein sequence data and serology. Arch. Virol. 106:171-200.
22. Shukla, D. D., Ward, C. W., and Brunt, A. A. 1994. The Potyviridae. CAB International, Wallingford.
23. Ward, C. W, McKern, N. M., Frenkel, M. J., and Shukla, D. D. 1992. Sequence data as the major criterion for potyvirus classification. Pages 283-297 in: Potyvirus taxonomy (Arch. Virol. [Suppl 5]). O.W. Barnett, ed. Springer, New York.