Zebrafish: Genomics on the fast track

Genome Research

Volumn 8, Issue 1, 1998, Pages 9-17

  Beier, David R ^a  

^a BRIGHAM AND WOMEN S HOSPITAL   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

DEVELOPMENTAL GENETICS; GENE MAPPING; GENE MUTATION; MARKER GENE; NONHUMAN; PRIORITY JOURNAL; RANDOM AMPLIFIED POLYMORPHIC DNA; REVIEW; ZEBRA FISH;

DANIO RERIO;

EID: 0031884192     PISSN: 10889051     EISSN: None     Source Type: Journal    
DOI: 10.1101/gr.8.1.9     Document Type: Review

References (36)

1. Allende, M., A. Amsterdam, T. Becker, K. Kawakami, N. Gaiano, and N. Hopkins. 1996. Insertional mutagenesis in zebrafish identifies two novel genes, pescadillo and dead eye, essential for embryonic development. Genes & Dev. 10: 3141-3155.
2. Beier, D.R. 1993. Single strand conformation polymorphism (SSCP) analysis as a tool for genetic mapping. Mamm. Genome 4: 627-631.
3. Beier, D.R., H. Dushkin, and D.J. Sussman. 1992. Mapping genes in the mouse using single strand conformation polymorphism analysis of recombinant inbred strains and interspecific crosses. Proc. Nat. Acad. Sci. 89: 9102-9106.
4. Brady, K.P., L.B. Rowe, H. Her, T.J. Stevens, J. Eppig, D.J. Sussman, J. Sikela, and D.R. Beier. 1997. Genetic mapping of 262 loci derived from expressed sequences in a murine interspecific cross using single-strand conformational polymorphism analysis. Genome Res. 7: 1085-1093.
5. Breen, M., L. Deakin, B. Macdonald, S. Miller, R. Sibson, E. Tarttelin, P. Avner, F. Bourgade, J. Guenet, X. Montagutelli et al. 1994. Towards high-resolution maps of the mouse and human genomes-A facility for ordering markers to 0.1 Cm resolution. Hum. Mol. Genet. 3: 621-627.
6. Carver, E.A. and L. Stubbs. 1997. Zooming in on the human-mouse comparative map: Genome conservation re-examined on a high-resolution scale. Genome Res. 7: 1123-1137.
7. Daga, R., G. Thode, and A. Amores. 1996. Chromosome complement, C-banding, Ag-NOR and replication banding in the zebrafish Danio rerio. Chrom. Res. 4: 29-32.
8. Debry, R. and M. Seldin. 1996. Human/mouse homology relationships. Genomics 33: 337-351.
9. Driever, W. and Z. Rangini. 1993. Characterization of a cell line derived from zebrafish (Brachydanio rerio) embryos. In Vitro Cell. Dev. Biol. Anim. 29A: 749-754.
10. Driever, W., D. Stemple, A. Schier, and L. Solnica-Krezel. 1994. Zebrafish: Genetic tools for studying vertebrate development. Trends Genet. 10: 152-159.
11. Driever, W., L. Solnica-Krezel, A. Schier, S. Neuhauss, J. Malicki, D. Stemple, D. Stainier, F. Zwartkruis, S. Abdelilah, Z. Rangini et al. 1996. A genetic screen for mutations affecting embryogenesis in zebrafish. Development 123: 37-46.
12. Ekker, M., M. Speevak, C. Martin, L. Joly, G. Giroux, and M. Chevrette. 1996. Stable transfer of zebrafish chromosome segments into mouse cells. Genomics 33: 57-64.
13. Elango, R., L. Riba, D. Housman, and K. Hunter. 1996. Generation and mapping of Mus spretus strain-specific markers for rapid genomic scanning. Mamm. Genome 7: 340-343.
14. Eppig, J. and J. Nadeau. 1995. Comparative maps: The mammalian jigsaw puzzle. Curr. Opin. Genet. Dev. 5: 709-716.
15. Gaiano, N., A. Amsterdam, K. Kawakami, M. Allende, T. Becker, and N. Hopkins. 1996. Insertional mutagenesis and rapid cloning of essential genes in zebrafish. Nature 383: 829-832.
16. Goff, D., K. Glavin, H. Katz, M. Westerfield, E. Lander, and C. Tabin. 1992. Identification of polymorphic simple sequence repeats in the genome of zebrafish. Genomics 14: 200-202.
17. Haffter, P., M. Granato, M. Brand, M. Mullins, M. Hammerschmidt, D. Kane, J. Odenthal, F. vanEeden, Y. Jiang, C. Heisenberg et al. 1996. The identification of genes with unique and essential functions in the development of the zebrafish. Development 123: 1-36.
18. Hinegardner, R. and D. Rosen. 1972. Cellular DNA content and the evolution of teleostean fishes. Am. Nat. 166: 621-644.
19. Johnson, S., D. Africa, S. Horne, and J. Postlethwait. 1995. Half-tetrad analysis in zebrafish: Mapping the ros-mutation and the centromere of linkage group I. Genetics 139: 1727-1735.
20. Johnson, S., M. Gates, M. Johnson, W. Talbot, S. Horne, K. Baik, S. Rude, J. Wong, and J. Postlethwait. 1996. Centromere-linkage analysis and consolidation of the zebrafish genetic map. Genetics 142: 1277-1288.
21. Knapik, E., A. Goodman, O. Atkinson, C. Roberts, M. Shiozawa, C. Sim, S. Weksler-Zangen, M. Trolliet, C. Futrell et al. 1996. A reference cross DNA panel for zebrafish (Danio rerio) anchored with simple sequence length polymorphism. Development 123: 451-460.
22. Makalowski, W., J. Zhang, and M. Boguski. 1996. Comparative analysis of 1196 orthologous mouse and human full-length mRNA and protein sequences. Genome Res. 6: 846-857.
23. McCarthy, L., K. Hunter, L. Schalkwyk, L. Riba, S. Anson, R. Mott, W. Newell, C. Bruley, I. Bar, E. Ramu et al. 1995. Efficient high-resolution genetic mapping of mouse interspersed repetitive sequence PCR products, toward integrated genetic and physical mapping of the mouse genome. Proc. Natl. Acad. Sci. 92: 5302-5306.
24. Nüsslein-Volhard, C. 1994. Of flies and fishes. Science 266: 572-574.
25. Postlethwait, J. and W. Talbot. 1997. Zebrafish genomics: From mutants to genes. Trends Genet. 13: 183-190.
26. Postlethwait, J., S. Johnson, C. Midson, W. Talbot, M. Gates, E. Ballinger, D. Africa, R. Andrews, T. Carl, and J. Eisen. 1994. A genetic linkage map for the zebrafish. Science 264: 699-703.
27. Rauch, G.-J., M. Granato, and P. Haffter. 1997. A polymorphic zebrafish line for genetic mapping using SSLPs on high-percentage agarose gels. In Tech. Tips Online T01208: http://tto.trends.com/cgi-bin/tto/pr/pg_art. cgi?sid=CAT1&ac=t01208.cgi-bin/tto/pr/pg_cat.cgi?cc=CAT1.
28. Schreeb, K., G. Groth, W. Sachsse, and K. Freundt. 1993. The karyotype of the zebrafish (Brachydanio rerio). J. Exp. Anim. Sci. 36: 27-31.
29. Schuler, G., M. Boguski, E. Stewart, E. Stein, G. Gyapay, K. Rice, R.E. White, P. Rodriguez-Tome, A. Aggarwal, E. Bajorec, and et al. 1996. A gene map of the human genome. Science 274: 540-546.
30. Schulte-Merker, S., F. von Eeden, M. Halpern, C. Kimmel, and C. Nüsslein-Volhard. 1994. no tail (ntl) is the zebrafish homologue of the mouse T (Brachyury) gene. Development 120: 1009-1015.
31. Shimoda, N., M. Chevrette, M. Ekker, Y. Kikuchi, Y. Hotta, and H. Okamoto. 1996. Mermaid, a family of short interspersed repetitive elements, is useful for zebrafish genome mapping. Biochem. Biophys. Res. Commun. 220: 233-237.
32. Streisinger, G., C. Walker, N. Dower, D. Knauber, and F. Singer. 1981. Production of clones of homozygous diploid zebrafish. Nature 291: 293-296.
33. Streisinger, G., F. Singer, C. Walker, D. Knauber, and N. Dower. 1986. Segregation analyses and gene-centromere distances in zebrafish. Genetics 112: 311-319.
34. Vos, P., R. Hogers, M. Bleeker, M. Reijans, T. van de Lee, M. Hornes, A. Frijters, J. Pot, J. Peleman, M. Kuiper, and M. Zabeau. 1995. AFLP: A new technique for DNA fingerprinting. Nucleic Acids Res. 23: 4407-4414.
35. Zhang, J., W.S. Talbot, and A.F. Schier. 1998. Positional cloning identifies zebrafish one-eyed pinhead as a permissive EGF-related ligand required during gastrulation. Cell (in press).
36. Zhong, T., K. Kaphingst, U. Akella, M. Haldi, E. Lander, and M. Fishman. 1997. Zebrafish genomic library in yeast artificial chromosomes. Genomics (in press).