Rules for ribozymes

Molecular and Cellular Neurosciences

Volumn 11, Issue 1-2, 1998, Pages 92-97

  Zhao, Jack Jiagang ^a   Lemke, Greg ^a  

^a SALK INSTITUTE FOR BIOLOGICAL STUDIES   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ALPHA LACTALBUMIN; ANTISENSE OLIGONUCLEOTIDE; ENDOTHELIAL LEUKOCYTE ADHESION MOLECULE 1; GLUCOKINASE; HUMAN GROWTH HORMONE; NEU DIFFERENTIATION FACTOR; PLEIOTROPHIN; PROTEIN KINASE C; RIBOZYME; RNA; STROMELYSIN; SYNAPTOSOMAL ASSOCIATED PROTEIN 25; VASCULAR CELL ADHESION MOLECULE 1;

ARTICLE; BASE PAIRING; COMPUTER PROGRAM; HUMAN; NERVOUS SYSTEM DEVELOPMENT; NERVOUS SYSTEM FUNCTION; NONHUMAN; PRIORITY JOURNAL; RNA SEQUENCE; RNA STRUCTURE;

EID: 0031860619     PISSN: 10447431     EISSN: None     Source Type: Journal    
DOI: 10.1006/mcne.1998.0669     Document Type: Article

References (34)

1. Bennett, C. F., Condon, T. P., Grimm, S., Chan, H., and Chiang, M. Y. (1994). Inhibition of endothelial cell adhesion molecule expression with antisense oligonucleotides. J. Immunol. 152: 3530-3540.
2. Bertrand, E., Pictet, R., and Grange, T. (1994). Can hammerhead ribozymes be efficient tools to inactivate gene function? Nucleic Acids Res. 22: 293-300.
3. Cameron, F. H., and Jennings, P. A. (1989). Specific gene suppression by engineered ribozymes in monkey cells. Proc. Natl. Acad. Sci. USA 86: 9139-9143.
4. Czubayko, F., Riegel, A. T., and Wellstein, A. (1994). Ribozyme-targeting elucidates a direct role of pleiotrophin in tumor growth. J. Biol. Chem. 269: 21358-21363.
5. Dean, N. M., McKay, R., Condon, T. P., and Bennett, C. F. (1994). Inhibition of protein kinase C-alpha expression in human A549 cells by antisense oligonucleotides inhibits induction of intercellular adhesion molecule 1 (Icam-1) mRNAby phorbol esters. J. Biol. Chem. 269: 16416-16424.
6. Efrat, S., Leiser, M., Wu, Y. J., Fusco-DeMane, D., Emran, O. A., Surana, M., Jetton, T. L., Magnuson, M. A., Weir, G., and Fleischer, N. (1994). Ribozyme-mediated attenuation of pancreatic beta-cell glucokinase expression in transgenic mice results in impaired glucose-induced insulin secretion. Proc. Natl. Acad. Sci. USA 91: 2051-2055.
7. Ehresmann, C., Baudin, F., Mougel, M., Romby, P., Ebel, J. P., and Ehresmann, B. (1987). Probing the structure of RNAs in solution. Nucleic Acids Res. 15:9109-9128.
8. Falls, D. L., Rosen, K. M., Corfas, G., Lane, W. S., and Fischbach, G. D. (1993). ARIA, a protein that stimulats acetylcholine receptor synthesis, is a member of the Neu ligand family. Cell 72: 801-815.
9. Flory, C. M., Pavco, P. A., Jarvis, T. C., Lesch, M. E., Wincott, F. E., Beigelman, L., Hunt, S. W., and Schrier, D. J. (1996). Nuclease-resistant ribozymes decrease stromelysin mRNA levels in rabbit synovium following exogenous delivery to the knee joint. Proc. Natl. Acad. Sci. USA 93: 754-8.
10. Ho, S. P., Britton, D. H. O., Stone, B. A., Behrens, D. L., Leffet, L. M., Hobbs, F. W., Miller, J. A., and Trainor, G. L. (1996). Potent antisense oligonucleotides to the human multidrug resistance-1 mRNA are rationally selected by mapping RNA-accessible sites with oligonucleotide libraries. Nucleic Acids Res. 24:1901-1907.
11. Holm, P. S., Dietel, M., and Krupp, G. (1995). Similar cleavage efficiencies of an oligoribonucleotide substrate and an mdr1 mRNA segment by a hammerhead ribozyme. Gene 167:221-225.
12. Jaeger, J. A., Turner, D. H., and Zuker, M. (1989). Improved predictions of secondary structures for RNA. Proc. Natl. Acad. Sci. USA 86: 7706-7710.
13. Jaeger, J. A., Turner, D. H., and Zuker, M. (1990). Predicting optimal and suboptimal secondary structure for RNA. In Molecular Evolution: Computer Analysis of Protein and Nucleic Acid Sequences (R. F. Doolittle, Ed.), pp. 281-306. Academic Press.
14. L'Huillier, P. J., Davis, S. R., and Bellamy, A. R. (1992). Cytoplasmic delivery of ribozymes leads to efficient reduction in alpha-lactalbumin mRNA levels in C127I mouse cells. EMBO J. 11: 4411-4418.
15. L'Huillier, P., Soulier, S., Stinnakre, M.-G., Lepourry, L., Davis, S. R., Mercier, J.-C., and Vilotte, J.-L. (1996). Efficient and specific ribozyme-mediated reduction of bovine α-lactalbumin expression in double transgenic mice. Proc. Natl. Acad. Sci. USA 93:6698-6703.
16. Lieber, A., and Strauss, M. (1995). Selection of efficient cleavage sites in target RNAs by using a ribozyme expression library. Mol. Cell. Biol. 15: 540-551.
17. Nieto, M. A., Sargent, M. G., Wilkinson, D. G., and Cooke, J. (1994). Control of cell behavior during vertebrate development by Slug, a zinc finger gene. Science 264: 835-839.
18. Osen-Sand, A., Catsicas, M., Staple, J. K., Jones, K. A., Ayala, G., Knowles, J., Grenningloh, G., and Catsicas, S. (1993). Inhibition of axonal growth by SNAP-25 antisense oligonucleotides in vitro and in vivo. Nature 364: 445-448.
19. Pfaff, S. L., Mendelsohn, M., Stewart, C. L., Edlund, T., and Jessell, T. M. (1996). Requirement for LIM homeobox gene Isl1 in motor neuron generation reveals a motor neuron-dependent step in interneuron differentiation. Cell 84: 309-20.
20. Stein, C. A., and Cheng, Y.-C. (1993). Antisense oligonucleotides as therapeutic agents-is the bullet really magical? Science 261: 1004-1012.
21. Steinecke, P., Herget, T., and Schreier, P. H. (1992). Expression of a chimeric ribozyme gene results in endonucleolytic cleavage of target messenger RNA and a concomitant reduction of gene expression in vivo. EMBO J. 11:1525-1530.
22. Steinecke, P., and Schreier, P. H. (1995). Ribozymes. Methods Cell Biol. 50: 449-460.
23. Srivastava, D., Cserjesi, P., and Olson, E. N. (1995). A subclass of bHLH proteins required for cardiac morphogenesis. Science 270: 1995-1999.
24. Symons, R. H. (1992). Small catalytic RNAs. Annu. Rev. Biochem. 61: 641-671.
25. Uhlenbeck, O. C., Pardi, A., and Feigon, J. (1997). RNA structure comes of age. Cell 90: 833-840
26. Vanario-Alonso, C. E., O'Hara, E., McGinnis, W., and Pick, L. (1995). Targeted ribozymes reveal a conserved function of the Drosophila paired gene in sensory organ development. Mech. Dev. 53:323-328.
27. Wagner, E. G., and Simons, R. W. (1994). Antisense RNA control in bacteria, phages, and plasmids. Annu. Rev. Microbiol. 48: 713-742.
28. Wakita, T., and Wands, J. R. (1994). Specific inhibition of hepatitis C virus expression by antisense oligodeoxynucleotides. In vitro model for selection of target sequence. J. Biol. Chem. 269: 14205-14210.
29. Zhao, J. J., and Pick, L. (1993). Generating loss-of-function phenotypes of the fushi tarazu gene with a targeted ribozyme in Drosophila. Nature 365: 448-451.
30. Zhao, J. J., and Lemke, G. (1998). Selective disruption of neuregulin-1 function in vertebrate embryos using ribozyme-tRNA transgenes. Development, in press.
31. Zuker, M. (1989). Computer prediction of RNA structure. In RNA Processing (J. E. Dahlberg and J. N. Abelson, Ed.), pp. 262-288. Academic Press.
32. Zuker, M. (1989). On finding all suboptimal foldings of an RNA molecule. Science 244:48-52.
33. Zuker, M. (1994). Prediction of RNA secondary structure by energy minimization. In Computer Analysis of Sequence Data, Part II (A. M. Griffin and H. G. Griffin, Eds.), pp. 267-294. Humana Press, Totowa, NJ.
34. Zuker, M., Jaeger, J. A., and Turner, D. H. (1991). A comparison of optimal and suboptimal RNA secondary structures predicted by free energy minimization with structures determined by phylogenetic comparison. Nucleic Acids Res. 19: 2707-2714.