Phylogenetic relationships in the Crassulaceae inferred from chloroplast DNA restriction-site variation

American Journal of Botany

Volumn 85, Issue 1, 1998, Pages 123-134

  Van Ham, Roeland C H J ^a,b   'T Hart, Henk ^a  

^a UTRECHT UNIVERSITY   (Netherlands)

^b UNIVERSITY OF YORK   (United Kingdom)

Author keywords

Chloroplast; Crassulaceae; DNA; Phylogeny

Indexed keywords

BOOTSTRAP ANALYSIS; CHLOROPLAST DNA; DECAY ANALYSIS; ENDONUCLEASE; NUCLEOTIDE SEQUENCE; PARSIMONY; PHYLOGENY; RESTRICTION ENZYME ANALYSIS; RESTRICTION SITE; WAGNER PARSIMONY ANALYSIS;

EID: 0031859512     PISSN: 00029122     EISSN: None     Source Type: Journal    
DOI: 10.2307/2446561     Document Type: Article

References (75)

1. ALBERT, V. A. , B. D. MISHLER, AND M. W. CHASE. 1992. Character-state weighting for restriction site data in phylogenetic reconstruction, with an example from chloroplast DNA. In D. E. Soltis, P. S Soltis, and J J. Doyle [eds.], Molecular systematics of plants, 369-403. Chapman and Hall, New York, NY.
2. _, S. E. WILLIAMS, AND M. W. CHASE. 1992. Carnivorous plants: phylogeny and structural evolution. Science 257: 1491-1495.
3. BERGER, A. 1930. Crassulaceae. In A. Engler and K. Prantl [eds.], Die Natürlichen Pflanzenfamilien, 352-483, 2nd ed., 18a. W. Engelmann, Leipzig.
4. BORISSOVA, A. G. 1939. Crassulaceae. In V. L. Komarov [ed.], Flora of the USSR. 9. Izdatel'stvo Akademii Nauk. Leningrad, USSR.
5. CLAUSEN, R. T. 1959. Sedum of the Trans Mexican Volcanic Belt, Cornell University Press, Ithaca, NY.
6. _. 1975. Sedum of North America north of the Mexican Plateau. Cornell University Press, Ithaca, NY.
7. CRONQUIST, A. 1981. An integrated system of classification of flowering plants. Columbia University Press, New York, NY.
8. _. 1985. History of generic concepts in the Compositae. Taxon 34: 6-10.
9. DAHLGREN. R. 1983. General aspects of angiosperm evolution and macrosystematics. Nordic Journal of Botany 3: 119-149.
10. DE CANDOLLE, A. P. 1828. Prodromus systematis naturalis regni vegetabilis, 3. Paris.
11. DESCHATRES, R. 1954. Recherches sur la phyllotaxie du genre Sedum. Revue Générale de Botanique 61: 501-570.
12. DONOGHUE, M. J., R. G. OLMSTEAD, J. F. SMITH, AND J. D PALMER. 1992. Phylogenetic relationships of Dipsacales based on rbcL sequences. Annals of the Missouri Botanical Garden 79: 333-345.
13. DOYLE, J. J. 1992. Gene trees and species trees: molecular systematics as one-character taxonomy. Systematic Botany 17: 144-163.
14. _, AND J. L. DOYLE. 1987. A rapid isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bullitin 19: 11-15.
15. _, AND _. 1993. Chloroplast DNA phylogeny of the Papilionoid legume tribe Phaseoleae Systematic Botany 18: 309-327
16. EGGLI, U. 1988. A monographic study of the genus Rosularia (Crassulaceae). Bradleya 6 (Suppl.). 1-119.
17. _, H. 'T HART, AND R. NYFFELER. 1995. Towards a consensus classification of the Crassulaceae. 1995. In H. 't Hart and U. Eggli [eds.], Evolution and systematics of the Crassulaceae, 173-192. Backhuys Publishers, Leiden, The Netherlands.
18. FELSENSTEIN, J. 1978. Cases in which parsimony or compatibility methods will be positively misleading. Systematic Zoology 27: 401-410.
19. _. 1985. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39: 783-791.
20. _. 1991. PHYLIP: Phylogeny Inference Package. Version 3.4. Computer program distributed by the University of Washington, Seattle, WA.
21. FRIEDRICH, H. C. 1979. Vorarbeiten zu einer Monographie der Gattung Crassula L. 3. Die hydrophylen Sippen in Süd- und Ostafrika. Mitteilungen Botanik München 15: 577-598.
22. FRÖDERSTROM. H. 1930. The genus Sedum L., 1. Acta Horti Gothoburgensis 5, Appendix: 1-75.
23. _. 1932. The genus Sedum L., 3. Acta Horti Gothoburgensis 7, Appendix: 1-125.
24. GRUND, C., AND U. JENSEN. 1981. Systematic relationships of the Saxifragales revealed by serological characteristics of seed proteins. Plant Systematics and Evolution 137: 1-22.
25. HIDEUX, M. 1981. Le pollen. Donées nouvelles de la microscopie électronique et de l'informatique. Structure du sporoderme de Rosidae-Saxifragales, étude comparative et dynamique. Paris.
26. JACOBSEN, V. 1954. Handbuch der sukkulenten Pflanzen, vol. 2 Gustav Fischer Verlag, Jena.
27. JACQUIN, N. J. VON. 1770. Hortus botanicus Vindobonensis. 1. Vienna.
28. JANSEN, R. K., AND J. D. PALMER. 1988. Phylogenetic implications of chloroplast DNA restriction site variation in the Mutisieae (Asteraceae). American Journal of Botany 75: 753-766.
29. _, K. E. HOLSINGER, H. J. MICHAELS, AND J. D. PALMER. 1990. Phylogenetic analysis of chloroplast DNA restriction site data at higher taxonomic levels: an example from the Asteraceae. Evolution 44: 2089-2105.
30. _, H. J. MICHAELS, AND J. D. PALMER. 1991. Phylogeny and character evolution in the Asteraceae based on chloroplast DNA restriction site mapping. Systematic Botany 16: 98-115.
31. JENSEN, L. C. W. 1968. Primary stem vascular patterns in three subfamilies of the Crassulaceae. American Journal of Botany 55: 553-563.
32. LEMS, K. 1960. Botanical notes on the Canary Islands. II. The evolution of plant forms in the islands: Aeonium. Ecology 41: 1-47.
33. LIU, H. -Y. 1989. Systematics of Aeonium (Crassulaceae). SPN 3, National Museum of Natural Science. Taiwan.
34. MAURITZON, J. 1933. Studien über die Embriologie der Familien Crassulaceae und Saxifragaceae. Hakand Ohlsons, Lund.
35. MERXMULLER, H., H. C. FRIEDRICH, AND J. GRAO. 1971. Cytotaxonomische Untersuchungen zur Gattungsstruktur von Crassula. Annalen Naturhististorisches Museum Wien 75: 111-119.
36. MILLER, J. C. 1991. RESTSITE: programs for analyzing restriction site or fragment data. Computer program distributed by the Pennsylvania State University. University Park, PA.
37. NEI, M. 1987. Molecular evolutionary genetics. Columbia University Press, New York, NY.
38. _, AND W. -H. Li. 1979. Mathematical model for studying genetic variation in terms of restriction endonucleases. Proceedings of the National Academy of Sciences, USA 75: 5269-5273.
39. OHBA, H. 1978. Generic and infrageneric classification of the Old World Sedoideae (Crassulaceae). Journal of the Faculty of Science, University of Tokyo, section 3, 12: 139-198.
40. PALMER, J. D. 1986. Isolation and structural analysis of chloroplast DNA. Methods in Enzymology 118: 167-186.
41. _, R. K. JANSEN, H. J. MICHAELS, M. W. CHASE, AND J. R. MANHART. 1988. Chloroplast DNA variation and plant phylogeny. Annals of the Missouri Botanical Garden 75: 1180-1206.
42. PRAEGER, R. L. 1932. An account of the Sempervivum group. Royal Horticultural Society, London.
43. QUIMBY, M. W. 1939. The floral morphology of the Crassulaceae. Ph.D. dissertation, Cornell University, Ithaca, NY.
44. RIESEBERG, L. H., AND D. E. SOLTIS. 1991. Phylogenetic consequences of cytoplasmic gene flow in plants. Evolutionary Trends in Plants 5: 65-84.
45. SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4: 406-425.
46. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATIS. 1989. Molecular cloning. A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
47. SANDBRINK, J. M., P. VELLEKOOP, R C. H. J. VAN HAM, AND J. VAN BREDERODE. 1989 A method for evolutionary studies on RFLP of chloroplast DNA, applicable to a range of plant species. Biochemical Sysiematics and Ecology 17: 45-49.
48. SCHÖNLAND, S. 1891. Crassulaceae. In A. Engler and K. Prantl [eds ], Die Natürlichen Pflanzenfamilien, 23-38 3, 2a. Leipzig.
49. SOLTIS, D. E., P. S. SOLTIS, AND J. J. DOYLE. 1992. Molecular systematics of plants, Chapman and Hall, New York, NY.
50. _, D. R. MORGAN, A. GRABLE, P. S. SOLTIS, AND R. KUZOFF. 1993. Molecular systematics of Saxifragaceae sensu stricto. American Journal of Botany 80: 1056-1081.
51. SWOFFORD, D. L. 1993. PAUP: Phylogenetic analysis using parsimony, version 3.1 1 Computer program distributed by the Illinois Natural History Survey. Champaign, IL.
52. _, AND G. J. OLSEN. 1990. Phytogeny reconstruction. In D. M. Hillis, and C Moritz [eds.], Molecular systematics, 411-501. Sinauer, Sunderland, MA.
53. TAKHTAJAN, A. 1980. Outline of the classification of flowering plants (Magnoliophyta). Botanical review 46: 225-359.
54. 'T HART, H. 1978. Biosystematic studies in the Acre group and the series Rupestria Berger of the genus Sedum L. (Crassulaceae). Ph.D. dissertation, Utrecht University Utrecht, The Netherlands.
55. _. 1982. The white-flowered Sedum species. 1. Principles of a phylogenetic classification of the Sedoideae (Crassulaceae) and the position of the white-flowered Sedum species. Proceedings Koninklijke Nederlandse Akademie Wetenschappen, Serie C 85: 663-675.
56. _. 1984. Crassulaceae. In A. Love [ed.], IOPB Chromosome number reports 85. Taxon 33: 756-760.
57. _. 1991. Evolution and classification of the European Sedum species (Crassulaceae). Flora Mediterranea 1: 31-61.
58. _. 1992. The archetype of the Crassulaceae. Acta Botanica Neerlandica 41: 107-108.
59. _, AND W. BERENDSEN. 1980. Ornamentation of the testa in Sedum (Crassulaceae). Plant Systematics and Evolution 135: 107-117.
60. _, AND J. KOEK-NOORMAN. 1989. The origin of the woody Sedoideae (Crassulaceae). Taxon 38: 535-544.
61. _, J. M. SANDBRINK, I. CSIKOS, A. OOYEN, AND J. VAN BREDERODE. 1993. Natural hybrids in Sedum. 4. The amphiploid origin of S. rupestre ssp rupestre. Plant Systematics and Evololution 184: 195-206.
62. THORNE, R. F. 1983. Proposed new realignments in the angiosperms. Nordic Journal of Botany 3: 75-117.
63. UHL, C. H. 1948. Cytotaxonomic studies in the subfamilies Crassuloideae, Kalanchoideae, and Cotyledonoideae of the Crassulaceae. American Journal of Botany 35: 695-706.
64. _. 1961a Some cytotaxonomic problems in the Crassulaceae. Evolution 15: 375-383.
65. _. 1961b. The chromosomes of the Sempervivoideae (Crassulaceae). American Journal of Botany 48: 114-123
66. _. 1963. Chromosomes and phylogeny of the Crassulaceae. Cactus and Succulent Journal (U.S.) 35: 80-84.
67. _. 1976. Chromosomes, hybrids and ploidy of Sedum cremnophila and Echeveria linguifolia (Crassulaceae). American Journal of Botany 63: 806-820.
68. _. 1978. Chromosomes of Mexican Sedum. 2. Section Pachysedum. Rhodora 80: 491-512
69. _. 1992. Polyploidy, dysploidy, and chromosome pairing in Echeveria (Crassulaceae) and its hybrids. American Journal of Botany 79: 556-566.
70. VAN HAM, R. C. H J. 1994. Phylogenetic implications of chloroplast DNA variation in the Crassulaceae. Ph.D. dissertation, Utrecht University. Utrecht, The Netherlands.
71. _, AND H.'t HART. 1994. Evolution of Sedum series Rupestria (Crassulaceae): evidence from chloroplast DNA and biosystematic data. Plant Systematics and Evolution 190: 1-20.
72. _, T. H. M. MES, H.'t HART, AND J. M. SANDBRINK. 1992. Clone bank and physical map of Sedum album chloroplast DNA. Biochemical Systematics and Ecology 20: 243-253.
73. _, _, _, AND _. 1994. Molecular evolution of noncoding regions of the chloroplast genome in the Crassulaceae and related species. Current Genetics 25: 558-566.
74. WALTHER, E. 1972. Echeveria. California Academy of Sciences, San Fransisco, CA.
75. WASSMER, A. 1955. Vergleichend-morphologische Untersuchungen an den Blüten der Crassulaceen. Ph.D. dissertation. University of Zürich, Zürich, Switzerland.