Reconstruction and display of curvilinear objects from optical section data using 3-D curve fitting algorithms

Journal of Microscopy

Volumn 191, Issue 1, 1998, Pages 97-107

  Shelden, E ^a   Knecht, D A ^b  

^a UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

^b UNIVERSITY OF CONNECTICUT   (United States)

Author keywords

3 D reconstruction; Confocal microscopy; Cytoskeleton; Microtubules

Indexed keywords

BIOINFORMATICS; CONFOCAL MICROSCOPY; CURVE FITTING; IMAGE ACQUISITION; LENSES;

3-D RECONSTRUCTION; CURVE FITTING ALGORITHM; CYTOSKELETONS; FILAMENT NETWORKS; HIGH RESOLUTION; MICROTUBULES; OPTICAL SECTIONING; OPTICAL SECTIONS; RECONSTRUCTION TECHNIQUES; VOLUME RECONSTRUCTION;

IMAGE RECONSTRUCTION;

ALGORITHM; ARTICLE; CONFOCAL MICROSCOPY; CYTOSKELETON; DICTYOSTELIUM; IMAGE RECONSTRUCTION; MEDICAL RESEARCH; MICROTUBULE; NONHUMAN; OPTICS; PRIORITY JOURNAL; THREE DIMENSIONAL IMAGING;

DICTYOSTELIUM;

EID: 0031859242     PISSN: 00222720     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2818.1998.00352.x     Document Type: Article

References (34)

1. Agard, D.A., Hiraoka, Y., Shaw, P. & Sedat, J.W. (1989) Fluorescence microscopy in three dimensions. Meth. Cell Biol. 30, 353-377.
2. Barillot, C., Gibaud, B., Scarabin, J. & Coatrieux, J. (1985) 3D reconstruction of cerebral blood vessels. IEEE Comput. Graphics Applications, 5 (12), 13-19.
3. Brakenhoff, G.J., Blom, P. & Barends, P. (1979) Confocal scanning light microscopy with high aperture immersion lenses. J. Microsc. 117, 219-252.
4. Brakenhoff, G.J., Visscher, K. & Van der Voort, H.T.M. (1989) Size and shape of the confocal spot: Control and relation to 3-D imaging and image processing. The Handbook of Biological Confocal Microscopy (ed. by J. Pawley). IMR Press, Madison WI.
5. Brown, R.A., Talas, G., Porter, R.A., McGrouther, D.A. & Eastwood, M. (1996) Balanced mechanical forces and microtubule contribution to fibroblast contraction. J. Cell Physiol. 169, 439-447.
6. Carrington, W.A., Lynch, R.M., Moore, E.D., Isenberg, G., Fogarty, K.E. & Fay, F.S. (1995) Superresolution three-dimensional images of fluorescence in cells with minimal light exposure. Science, 268, 1483-1487.
7. Cassimeris, L., Pryer, N.K. & Salmon, E.D. (1988) Real-time observations of microtubule dynamic instability in living cells. J. Cell Biol. 107, 2223-2231.
8. Chasen, S.H. (1975) Geometric Principles and Procedures for Computer Graphics Applications. Prentice-Hall, Englewood Cliffs, NJ.
9. Cohen, A.R., Roysam, B. & Turner, J.N. (1994) Automated tracing and volume measurements of neurons from 3-D confocal fluorescence microscopy data. J. Microsc. 173, 103-114.
10. Cox, G. & Sheppard, C. (1993) Effects of image deconvolution on optical sectioning in conventional and confocal microscopes. Bioimaging, 1, 82-95.
11. Ding, R.K., McDonald, L. & McIntosh, J.R. (1993) Three-dimensional reconstruction and analysis of mitotic spindles from the yeast Schizosaccharomyces pombe. J. Cell Biol. 120, 141-151.
12. Foley, J.D., van Dam, A., Feiner, S.K. & Hughes, J.F. (1990) Computer Graphics Principles and Practice, 2 edn. Systems Programming Series, pp. 471-531, Addison-Wesley, New York.
13. Frieder, G., Gordon, D. & Reynolds, R. (1985) Back-to-front display of voxel-based objects. IEEE Comput. Graphics Image Processing, 5, 52-60.
14. Fuji, S., Tsukamoto, Y., Kaneda, Y., Fuji, M., Akeno, K., Matsuo, M., Yamasaki, K. & Ayers, C. (1986) Three dimensional modeling of cerebral arteries from cineangiograms. Proc. 8th Annual Conference of the IEEE Engineering in Medicine and Biology Society, New York, pp. 109-111.
15. Guilak, F. (1994) Volume and surface area measurement of viable chondrocytes in situ using geometric modeling of serial confocal data. J. Microsc. 173, 245-256.
16. Ingber, D.E. (1993) Cellular tensegrity: defining new rules of biological design that govern the cytoskeleton. J. Cell Sci. 104, 613-627.
17. Jacobs, J.R. & Stevens, J.K. (1986) Experimental modification of PC12 neurite shape with the microtubule-depolymerizing drug nocodazole: a serial electron microscope study of neurite shape control. J. Cell Biol. 103 (3): 907-915.
18. Kajiya, J. & Von Herzen, B. (1984) Ray tracing volume densities. Comput. Graphics, 18, 165-174.
19. Kurachi, M., Hoshi, M. & Tashiro, H. (1995) Buckling of a single microtubule by optical trapping forces: direct measurment of microtubule rigidity. Cell Motil. Cytoskel. 30, 221-228.
20. Lorensen, W.E. & Cline, H.E. (1987) 'Marching Cubes': A high resolution 3D surface construction algorithm. Comput. Graphics, 21, 163-169.
21. Mathog, D. (1985) Light microscope based analysis of three-dimensional structure: application to the study of Drosophila salivary gland nuclei. II. Algorithms for model analysis. J. Microsc. 137, 253-273.
22. McNally, J. (1995) 3D analysis of cell movement during normal and myosin II null cell morphogenesis in Dictyostelium. Dev. Biol. 167, 118-129.
23. Pawley, J. (1989) Fundamental limits in confocal microscopy. Handbook of Biological Confocal Microscopy. IMR Press, Madison WI.
24. Sammak, P.J. & Borisy, G.G. (1988) Detection of single fluorescent microtubules and methods for determining their dynamics in living cells. Cell Motil. Cytoskel. 10, 237-245.
25. Schulze, E. & Kirschner, M. (1987) Dynamic and stable populations of microtubules in cells. J. Cell Biol. 104, 277-288.
26. Shaw, P.J. (1993) Computer reconstruction in three-dimensional fluorescence microscopy. Electronic Light Microscopy, pp. 211-230. Wiley-Liss, Inc., New York.
27. Shaw, P.J. & Rawlins, D.J. (1991) The point-spread function of a confocal microscope; its measurement and use in deconvolution of 3-D data. J. Microsc. 163, 151-165.
28. Shelden, E. & Knecht, D.A. (1995) Mutants lacking myosin II cannot resist forces generated during multicellular development. J. Cell. Sci. 108, 1105-1115.
29. Shelden, E. & Wadsworth, P. (1993) Observation and quantification of individual microtubule behavior in vivo: microtubule dynamics are cell-type specific. J. Cell Biol. 120, 935-945.
30. Soll, D.R. (1988) 'DMS,' a computer-assisted system for quantitating motility, the dynamics of cytoplasmic flow, and pseudopod formation: its application to Dictyostelium chemotaxis. Cell Motil. Cytoskel. 10, 91-106.
31. Tanaka, E.M. & Kirschner, M.W. (1991) Microtubule behavior in the growth cones of living neurons during axon elongation. J. Cell Biol. 115, 345-363.
32. Taylor, D.L. & Salmon, E.D. (1989) Basic fluorescence microscopy. Methods Cell Biol. 29, 207-237.
33. Walker, R.A., O'Brien, E.T., Pryer, N.K., Soboeiro, M.F., Voter, W.A., Erickson, H.P. & Salmon, E.D. (1988) Dynamic instability of individual microtubules analyzed by video light microscopy. J. Cell Biol. 107, 1437-1448.
34. Wilson, T. (1990) The role of the pinhole in confocal imaging systems. Handbook of Biological Confocal Microscopy, 2nd edn (ed. by J. B. Pawley), pp. 113-126. Plenum Press, New York.