Psychrotolerant sulfate-reducing bacteria from an oxic freshwater sediment, description of Desulfovibrio cuneatus sp. nov. and Desulfovibrio litoralis sp. nov.

Systematic and Applied Microbiology

Volumn 21, Issue 2, 1998, Pages 212-219

  Sass, Henrik ^a   Berchtold, Manfred ^b   Branke, Jürgen ^d   König, Helmut ^b   Cypionka, Heribert ^c   Babenzien, Hans Dietrich ^a  

^a Inst Gewasserokologie B   (Germany)

^b JOHANNES GUTENBERG UNIVERSITY   (Germany)

^c UNIVERSITY OF OLDENBURG   (Germany)

^d NONE

Author keywords

Aerobic respiration; Aggregation; Desulfovibrio cuneatus sp. nov.; Desulfovibrio litoralis sp. nov.; Oxic sediments; Oxygen tolerance; Psychrophilic bacteria

Indexed keywords

OXYGEN; RIBOSOME DNA; SULFATE;

AEROBIC BACTERIUM; AEROBIC METABOLISM; ARTICLE; BACTERIAL GROWTH; BACTERIAL METABOLISM; BACTERIUM ISOLATION; CELL STRUCTURE; DESULFOVIBRIO; DESULFOVIBRIO CUNEATUS; DESULFOVIBRIO LITORALIS; DNA DETERMINATION; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT;

BACTERIA (MICROORGANISMS); DESULFOVIBRIO; DESULFOVIBRIO CUNEATUS; DESULFOVIBRIO LITORALIS; NEGIBACTERIA;

EID: 0031848920     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0723-2020(98)80025-8     Document Type: Article

References (46)

1. BERCHTOLD, M., LUDWIG, W., KÖNIG, H.: 16S rDNA sequence and phylogenetic position of an uncultivated spirochete from the hindgut of the termite Mastotermes darwiniensis Froggatt. FEMS Microbiol. Lett. 123, 269-274 (1994).
2. BRAUMAN, A., KOENIG, J. F., DUTREIX, J., GARCIA, J. L.: Characterization of two sufate-reducing bacteria from the gut of the soil-feeding termite, Cubitermes speciosus. Antonie van Leeuwenhoek 58, 271-275 (1990).
3. CASANOVA, J.-L., PANNETIER, C., JAULIN, C., KOURILSKY, P.: Optimal conditions for directly sequencing double-stranded PCR products with Sequenase. Nucleic Acids Res. 18, 4028 (1990).
4. CASPER, S. J. (ed.): Lake Stechlin - A temperate oligotrophic lake. Dordrecht, Dr. W. Junk Publishers (1985).
5. CYPIONKA, H.: Sulfate transport. Methods Enzymol. 243, 3-14 (1994).
6. CYPIONKA, H., PFENNIG, N.: Growth yields of Desulfotomaculum orientis with hydrogen in chemostat culture. Arch. Microbiol. 143, 366-369 (1986).
7. 2 or nitrate by sulfate-reducing bacteria. Arch. Microbiol. 158, 93-99 (1992).
8. DESOETE, G.: A least squares algorithm for fitting additive trees to proximity data. Psychometrika 48, 621-626 (1983).
9. DESOETE, G.: Additive tree representations of incomplete dissimilatory data. Quality and Quantity. 18, 387-393 (1984).
10. DEVEREUX, R., HE, S.-H., DOYLE, C. L., ORKLAND, S., STAHL, D. A., LEGALL, J., WHITMAN, W. B.: Diversity and origin of Desulfovibrio species: phylogenetic definition of a family. J. Bacteriol. 172, 3609-3619 (1990).
11. DILLING, W., CYPIONKA, H.: Aerobic respiration in sulfate-reducing bacteria. Arch. Microbiol. 71, 123-128 (1990).
12. FELSENSTEIN, J.: Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783-791 (1985).
13. FITCH, W. M., MARGOLIASH, E.: Construction of phylogenetic trees. Science 155, 279-284 (1967).
14. FUKUI, M., TAKII, S.: Survival of sulfate-reducing bacteria in oxic surface sediment of a seawater lake. FEMS Microbiol. Ecol. 73, 317-322 (1990).
15. HARDER, W., VELDKAMP, H.: Physiology of an obligately psychrophilic marine Pseudomonas species. J. Appl. Bacteriol. 31, 12-23 (1968).
16. HÜTTEL, M., GUST, G.: Impact of bioroughness on interfacial solute exchange in permeable sediments. Mar. Ecol. Prog. Ser. 89, 253-267 (1992).
17. ISAKSEN, M. F., JØRGENSEN, B. B.: Adaptation of psychrophilic and psychrotrophic sulfate-reducing bacteria to permanently cold marine environments. Appl. Environ. Microbiol. 62, 408-414 (1996).
18. ISAKSEN, M. F., TESKE, A.: Desulforhopalus vacuolatus gen. nov., sp. nov., a new moderately psychrophilic sulfate-reducing bacterium with gas vacuoles isolated from a temperate estuary. Arch. Microbiol. 166, 160-168 (1996).
19. JOHNSON, J. L.: Nucleic acids in bacterial classification, pp. 8-11. In: Bergey's Manual of Systematic Bacteriology, Vol. 1 (KRIEG, N. R., HOLT, J. G., eds.) Baltimore & London, Williams & Wilkins 1984.
20. JØRGENSEN, B. B., BAK, F.: Pathways and microbiology of thiosulfate transformations and sulfate reduction in a marine sediment (Kattegat, Denmark). Appl. Environ. Microbiol. 57, 847-856 (1991).
21. JUKES, T. H., CANTOR, C. R.: Evolution of protein molecules, pp 21-132. In: Manual of protein metabolism (H. N. Munro, ed.) New York, Academic Press, 1969.
22. KIMURA, M.: A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16, 111-120 (1980).
23. KREKELER, D., TESKE, A., CYPIONKA, H.: Migration of sulfate-reducing bacteria in response to the oxygen regime in a cyanobacterial mat of Solar Lake (Sinai, Egypt). FEMS Microbiol. Ecol. (submitted) (1997).
24. KUHNIGK, T., BRANKE, J., KREKELER, D., CYPIONKA, H., KÖNIG, H.: A feasible role of sulfate-reducing bacteria in the termite gut. Syst. Appl. Microbiol. 19, 139-149 (1996).
25. LAANBROEK, H. J., PFENNIG, N.: Oxidation of short-chain fatty acids by sulfate-reducing bacteria in freshwater and marine sediments. Arch. Microbiol. 128, 330-335 (1981).
26. MAIDAK, B. L., OLSEN, G. J., LARSEN, N., OVERBEEK, R., MCCAUGHEY, M. J., WOESE, C. R.: The Ribosomal Database Project (RDP). Nucleic Acids Res. 24, 82-85 (1996).
27. MESBAH, M., PREMACHANDRAN, U., WHITMAN, W.: Precise measurement of the G+C content of desoxyribonucleic acid by high performance liquid chromatography. Int. J. Syst. Bact. 39, 159-167 (1989).
28. MORITA, R. Y.: Psychrophilic bacteria. Bacteriol. Rev. 39, 144-167 (1975).
29. OLSEN, G. J.: Phylogenetic analysis using ribosomal RNA. Methods Enzymol. 164, 793-812 (1988).
30. 12-requiring member of the family Rhodospirillaceae. Int. J. Syst. Bacteriol. 28, 283-288 (1978).
31. PFENNIG, N., WAGENER, S.: An improved method of preparing wet mounts for the photomicrograph of microorganism. J. Microbiol. Meth. 4, 303-306 (1986).
32. RISATTI, J. B., CAPMAN, W. C., STAHL, D. A.: Community structure of a microbial mat: The phylogenetic dimension. Proc. Natl. Acad. Sci. USA 91, 10173-10177 (1994).
33. RODRIGUEZ-TOMÉ, P., STOEHR, P. J., CAMERON, G. N., FLORES, T. P.: The European Bioinformatics Institute (EBI), Nucleic Acids Res. 24, 6-12 (1996).
34. SAITOU, N., NEI, M.: The neighbor joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4, 406-425 (1987).
35. SANGER, F., NICKLEN, S., COULSON, A. R.: DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74, 5463-5467 (1977).
36. SASS, H., CYPIONKA, H., BABENZIEN, H.-D.: Sulfate-reducing bacteria from the oxic layers of the oligotrophic Lake Stechlin. Arch. Hydrobiol. Spec. Issues Advanc. Limnol. 48, 241-246 (1996).
37. SASS, H., CYPIONKA, H., BABENZIEN, H.-D.: Vertical distribution of sulfate-reducing bacteria at the oxic-anoxic interface in sediments of the oligotrophic Lake Stechlin. FEMS Microbiol. Ecol. 22, 245-255 (1997).
38. TABATABAI, M. A.: Determination of sulfate in water samples. Sulphur Inst. J. 10, 11-13 (1974).
39. TEE, W., DYALL-SMITH, M., WOODS, W., EISEN, D.: Probable new species of Desulfovibrio isolated from a pyogenic liver abcess. J. Clin. Microbiol. 34, 1760-1764 (1996).
40. TESKE, A., WAWER, C., MUYZER, G., RAMSING, N. B.: Distribution of sulfate-reducing bacteria in a stratified fjord (Mariager Fjord, Denmark) as evaluated by most-probable-number counts and denaturing gradient gel electrophoresis of PCR-amplified ribosomal DNA fragments. Appl. Environ. Microbiol. 62, 1405-1415 (1996).
41. TRINKERL, M., BREUNIG, A., SCHAUDER, R., KÖNIG, H.: Desulfovibrio termitidis, sp. nov., a carbohydrate-degrading sulfate-reducing bacterium from the hindgut of a termite. System. Appl. Microbiol. 13, 372-377 (1990).
42. TSCHECH, A., PFENNIG, N.: Growth yield increase linked to coffeate reduction in Acetobacterium woodii. Arch Microbiol. 137, 163-167 (1984).
43. VISSCHER, P. T., PRINS, R. A., VAN GEMERDEN, H.: Rates of sulfate reduction and thiosulfate consumption in a marine microbial mat. FEMS Microbiol. Ecol. 86, 283-294 (1992).
44. WIDDEL, F.: Anaerober Abbau von Fettsäuren und Benzoesäure durch neu isolierte Arten sulfatreduzierender Bakterien. PhD Thesis University of Göttingen 1980.
45. WIDDEL, F., BAK, F.: Gram-negative mesophilic sulfate-reducing bacteria, pp. 3352-3372. In: The Prokaryotes (BALOWS, A., TRÜPER, H. G., DWORKIN, M., HARDER, W., SCHLEIFER, K.-H., eds.) 2nd ed., New York, Springer 1992.
46. WIDDEL, F., PFENNIG, N.: Dissimilatory sulfate-or sulfur-reducing bacteria. In: Bergey's Manual of Systematic Bacteriology, Vol. 1 (KRIEG, N. R., HOLT, J. G., eds.) Baltimore & London, Williams & Wilkins 1984.