Classification of rice germplasm: III. High-resolution fingerprinting of cytoplasmic genetic male-sterile (CMS) lines with AFLP

Theoretical and Applied Genetics

Volumn 96, Issue 6-7, 1998, Pages 941-949

  Subudhi, P K ^a   Nandi, S ^a   Casal, C ^a   Virmani, S S ^a   Huang, N ^a  

^a INTERNATIONAL RICE RESEARCH INSTITUTE   (Philippines)

Author keywords

AFLP; Fingerprinting; Genetic diversity; Hybrid rice; Oryza sativa

Indexed keywords

AMPLIFIED FRAGMENT LENGTH POLYMORPHISM; CULTIVAR; CYTOPLASMIC MALE STERILITY; DENDROGRAM; DNA FINGERPRINTING; GENETIC DIFFERENCE; GENETIC DIVERSITY; GENETIC MARKER; GENETIC SELECTION; GERMPLASM; HYBRID; PLANT BREEDING; PRIMER DNA; RICE;

EID: 0031839448     PISSN: 00405752     EISSN: None     Source Type: Journal    
DOI: 10.1007/s001220050824     Document Type: Article

References (33)

1. Becker J, Vos P, Kuiper M, Salamini F, Heun M (1995) Combined mapping of AFLP and RFLP markers in barley. Mol Gen Genet 249:65-73
2. Cho YG, Blair MW, Panaud O, McCouch SR (1996) Cloning and mapping of variety-specific rice genomic DNA sequences: amplified fragment length polymorphism (AFLP) from silver stained polyacrylamide gels. Genome 39:373-378
3. Dalmacio R, Brar DS, Virmani SS, Khush GS(1995)Identification and transfer of a new cytoplasmic male sterility source from Oryza perennis into indica rice (O. sativa). Euphytica 82:221-225
4. Dalmacio RD, Brar DS, Virmani SS, Khush GS(1996)Male sterile line in rice (Oryza sativa) developed with O. glumaepatula cytoplasm. IRRN 21:22-23
5. Dellaporta SL, Wood J, Hick JB (1983) A plant DNA mini preparation; version II. Plant Mol Biol Rep 1:19-21
6. Folkertsma RT, Rouppe van der Voort JNAM, de Groot KE, van Zandvoort PM, Schots A, Gommers FJ, Helder J, Bakker J (1996) Gene pool similarities of potato cyst nematode populations assessed by AFLP analysis. MPMI 9:47-54
7. Fukuoka S, Hosaka K, Kamijima O (1992) Use of random amplified polymorphic DNAs (RAPDs) for identification of rice accessions. Jpn J Genet 67:247-252
8. Ghareyazie B, Huang N, Second G, Bennett J, Khush GS (1995) Classification of rice germplasm. I. Analysis using ALP and PCR-based RFLP. Theor Appl Genet 91:218-227
9. Glaszmann JC (1987) Isozymes and classification of Asian rice varieties. Theor Appl Genet 74:21-30
10. International Rice Research Institute (1986)Annual Report for 1985. International Rice Research Institute, Manila, Philippines
11. IRRI (1995) Parentage of IRRI Crosses. IRRI, Manila, Philippines
12. Janssen P, Coopman R, Huys G, Swings J, Bleeker M, Vos P, Zabeau M, Kersters K (1996) Evaluation of the DNA fingerprinting method AFLP as a new tool in bacterial taxonomy. Microbiology 142:1881-1893
13. Kawase M (1994) Application of the restriction landmark genomic scanning (RLGS) methods to rice cultivars as a new fingerprinting technique. Theor Appl Genet 89:861-864
14. Lin SC, Yuan LP (1980)Hybrid rice breeding in China. In: IRRI (ed) Innovative approaches to rice breeding. International Rice Research Institute, Manila, Philippines, pp 35-51
15. Mackill DJ (1995) Classifying japonica rice cultivars with RAPD markers. Crop Sci 35:889-894
16. Mackill DJ, Zhang Z, Redona ED, Colowit PM (1996) Level of polymorphism and genetic mapping of AFLP markers in rice. Genome 39:969-977
17. Maheswaran M, Subudhi PK, Nandi S, Xu JC, Parco A, Yang D, Huang N (1997) Polymorphism, distribution, and segregation of AFLP markers in a doubled haploid population of rice. Theor Appl Genet 94:39-45
18. Nandi S, Subudhi PK, Senadhira D, Manigbas NL, Sen-Mandi S, Huang N (1997) Mapping QTLs with AFLP and selective genotyping for submergence tolerance in rice. Mol Gen Genet 255:1-8
19. Ramakrishna W, Lagu MD, Gupta VS, Ranjekar PK (1994) DNA fingerprinting in rice using oligonucleotide probes specific for simple repetitive DNA sequences. Theor Appl Genet 88:402-406
20. Ramakrishna W, Chowdari KD, Lagu MD, Gupta VS, Ranjekar PK (1995) DNA fingerprinting to detect genetic variation in rice using hypervariable DNA sequences. Theor Appl Genet 90:1000-1006
21. Rohlf FJ (1990) NTSYS-pc manual version 1.70. Exeter Software, Satauket, N.Y.
22. Smith JSC, Smith OS (1989) The description and assessment of distances between inbred lines of maize. II. The utility of morphological, biochemical and genetic descriptors and a scheme for testing of distinctiveness between inbred lines. Maydica 34:151-161
23. Sokal RR, Sneath PH (1963) Principles of numerical taxonomy. WH Freeman, San Francisco
24. Thomas CM, Vos P, Zabeau M, Jones DA, Norcott KA, Chadwick BP, Jones JDG (1995) Identification of amplified restriction fragment polymorphism (AFLP) markers tightly linked to the tomato Cf-9 gene for resistance to Cladosporium fulvum. Plant J 8:785-794
25. Tohme J, Gonzalez OD, Beebe S, Duque MC (1996) AFLP analysis of gene pools of a wild bean core collection. Crop Sci 36: 1375-1384
26. Travis SE, Maschinski J, Keim P (1996) An analysis of genetic variation in Astragalus cremnophylax var 'cremnophylax', a critically endangered plant using AFLP markers. Mol Ecol 5: 735-745
27. Virk PS, Newbury HJ, Jackson MT, Ford-Lloyed BV (1995) The identification of duplicate accessions within a rice germplasm collection using RAPD analysis. Theor Appl Genet 90: 1049-1055
28. Vos P, Hoggers R, Becker M, Reijans M, Lee T, Homes M, Friejter A, Pot J, Peleman J, Kuiper M, Zabeau M (1995) AFLP: a new technique for DNA fingerprinting. Nucleic Acids Res 23: 4407-4414
29. Wang ZY, Tanksley SD (1989) Restriction fragment length polymorphism in Oryza sativa L. Genome 32:1113-1118
30. Yang GP, Saghai-Maroof MA, Xu CG, Zhang Q, Biyashev RM (1994) Comparative analysis of microsatellite DNA polymorphism in landrace and cultivars of rice. Mol Gen Genet 245:187-194
31. Yu LX, Nguyen HT (1994) Genetic variation detected with RAPD markers among upland and lowland rice cultivars (Oryza sativa L.). Theor Appl Genet 87:668-672
32. Yuan LP, Virmani SS (1988)Status of hybrid rice research and development. In: IRRI (ed) Hybrid rice. International Rice Research Institute, Manila, Philippines, pp 7-24
33. Zabeau M, Vos P (1993) Selective restriction fragment amplification: a general method for DNA fingerprinting. European Patent Application no. 92402629.7. Publ no. 0534858 A1