Evolution of a mammalian promoter through changes in patterns of transcription factor binding

Journal of Molecular Evolution

Volumn 46, Issue 6, 1998, Pages 639-648

  Singh, Nandita ^a,b   Berger, Franklin G ^a  

^a UNIVERSITY OF SOUTH CAROLINA   (United States)

^b WHITEHEAD INSTITUTE FOR BIOMEDICAL RESEARCH   (United States)

Author keywords

Mus genus; Promoter; Regulatory element; Transcription

Indexed keywords

TRANSCRIPTION FACTOR;

ARTICLE; BINDING SITE; GENE REPRESSION; NONHUMAN; NUCLEIC ACID BASE SUBSTITUTION; PROMOTER REGION; SPECIES DIFFERENCE;

ANIMALS; BASE SEQUENCE; BINDING SITES; DNA-BINDING PROTEINS; EVOLUTION, MOLECULAR; EYE PROTEINS; INTRACELLULAR SIGNALING PEPTIDES AND PROTEINS; MEMBRANE PROTEINS; MICE; MOLECULAR SEQUENCE DATA; MURIDAE; MUTAGENESIS, SITE-DIRECTED; PROMOTER REGIONS (GENETICS); PROTEINS; SEQUENCE DELETION; SPECIES SPECIFICITY; TRANSCRIPTION FACTORS; TRANSCRIPTION, GENETIC;

MAMMALIA; MURINAE; MUS; MUS MUSCULUS DOMESTICUS; MUS PAHARI;

EID: 0031838691     PISSN: 00222844     EISSN: None     Source Type: Journal    
DOI: 10.1007/PL00006344     Document Type: Article

References (42)

1. Adams AD, Choate DM, Thompson MA (1995) NF1-L is the DNA-binding component of the protein complex at the peripherin negative regulatory element. J Biol Chem 270:6975-6983
2. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman JG, Smith JA, Struhl K (1996) Current protocols in molecular biology, Supplement 36. John Wiley and Sons, New York
3. Berger FG, Watson G (1989) Androgen regulated gene expression. Annu Rev Physiol 51:51-65
4. Berger FG, Gross KW, Watson G (1981) Isolation and characterization of a DNA sequence complementary to an androgen-regulated messenger RNA from mouse kidney. J Biol Chem 256:7006-7013
5. Bultman SJ, Michaud EJ, Woychik RP (1992) Molecular characterization of the mouse agouti locus. Cell 71:1195-1204
6. Carroll SB (1995) Homeotic genes and the evolution of arthropods and chordates. Science 376:479-485
7. Chaudhuri A, Barbour KW, Berger FG (1991) Evolution of messenger RNA structure and regulation in the genus Mus the androgen-inducible RP2 mRNAs. Mol Biol Evol 8:641-653
8. de Wet JR, Wood KV, Deluca M, Helinski DR, Subramani S (1987) Firefly luciferase gene: structure and expression in mammalian cells. Mol Cell Biol 7:725-737
9. Dickinson WJ (1991) The evolution of regulatory genes and patterns in Drosophila. Evol Biol 25:127-173
10. Dickinson DP, Gross KW, Piccini N, Wilson CM (1984) Evolution and variation in renin genes in mice. Genetics 108:651-667
11. Elliott RW, Berger FG (1983) DNA sequence polymorphism in an androgen-regulated gene is associated with alteration in the encoded mRNAs. Proc Natl Acad Ssi USA 80:501-504
12. Gorman CM, Moftat LF, Howard BH (1982) Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells. Mol Cell Biol 2:1044-1051
13. Gorski K, Carniero M, Schibler U (1986) Tissue specific in vitro transcription from the mouse albumin promoter. Cell 47:767-776
14. Graham FL, van der Eb AJ (1973) A new technique for the assay of infectivity of human adenovirus 5 DNA. Virology 52:456-461
15. Guérin SL, Anzivino MJ, Roy RJ, Moore DD (1993) Expression of the rat growth-hormone gene is under the influence of a cell-type-specific silencer element. Eur J Biochem 213:399-404
16. Hammer MF, Wilson AC (1987) Regulatory and structural genes for lysozymes of mice. Genetics 115:521-533
17. Hanks M, Wurst W, Anson-Cartwright L, Auerbach AB, Joyner AL (1995) Rescue of the En-1 mutant phenotype by replacement of En-1 with En-2. Science 269:679-682
18. Haverty TP, Kelly CJ, Hines WH, Amenta PS, Watanabe M, Harper RA, Kefalides NA, Neilson EG (1988) Characterization of a renal tubular epithelial cell line which secretes the autologous target antigen of autoimmune experimental interstitial nephritis. J Cell Biol 107:1359-1368
19. Krasney PA, Carr C, Cavener DR (1990) Evolution of the glucose dehydrogenase gene in Drosophila. Mol Biol Evol 7:155-177
20. Lee RC, Feinbaum RL, Ambros V (1993) The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementary to lin-14. Cell 75:843-854
21. Li X, Noll M (1994) Evolution of distinct developmental functions of three Drosophila genes by acquisition of different cis-regulatory regions. Nature 367:83-87
22. Luckow B, Schutz G (1987) CAT constructions with multiple unique restriction sites for the functional analysis of eukaryotic promoters and regulatory elements. Nucleic Acids Res 15:5490
23. Ludwig MZ, Kreitman M (1995) Evolutionary dynamics of the enhancer region of even-skipped in Drosophila. Mol Biol Evol 12: 1002-1011
24. Magoulas C, Loverre-Chyurlia A, Abukashawa S, Bally-Cuif L, Mickey DA (1993) Functional conservation of aglucose-repressible amylase gene promoter from Drosophila virilis in Drosophila melanogaster. J Mol Evol 36:234-242
25. Martinez-Cruzado JC, Swimmer C, Fenerjian MG, Kafatos FC (1988) Evolution of the autosomal chorion locus in Drosophila. I. General organization of the locus and sequence comparisons of genes s15 and s19 in evolutionary distant species. Genetics 199:663-677
26. McIntyre RJ (1982) Regulatory genes and adaptation: past, present, and future. Evol Biol 15:247-285
27. Mitchell PJ, Tjian R (1989) Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. Science 245: 371-378
28. Noll M (1993) Evolution and role of Pax genes. Curr Biol 3:595-605
29. Paigen K (1989) Mammalian β-glucuronidase: genetics, molecular biology, and cell biology. Prog Nucleic Acids Res Mol Biol 37:155-205
30. Rheaume C, Barbour KW, Tseng-Crank J, Berger FG (1989) Molecular genetics of androgen-regulated PR2 gene transcription in the mouse kidney. Mol Cell Biol 9:477-483
31. Rheaume C, Schonfeld C, Porter C, Berger FG (1990) Evolution of androgen-regulated ornithine decarboxylase expression in mouse kidney. Mol Endocrinol 3:1243-1251
32. Samuelson LC, Phillips RS, Swanberg LJ (1996) Amylase gene structures in primates: retroposon insertions and promoter evolution. Mol Biol Evol 13:767-779
33. Segal JA, Schulte PM, Powers DA, Crawford DL (1996) Descriptive and functional characterization of variation in the Fundulus heteroclitus Ldh-B proximal promoter. J Exp Zool 275:355-364
34. Singh N, Barbour K, Berger F (1998) Evolution of transcriptional regulatory elements within the promoter of a mammalian gene. Mol Biol Evol 15:312-325
35. Snider LD, King D, Lingrel JB (1985) Androgen regulation of MAK mRNAs in mouse kidney. J Biol Chem 260:9884-9893
36. Tjian R, Maniatis T (1994) Transcriptional activation: a complex puzzle with few easy pieces. Cell 77:5-8
37. Tseng-Crank J, Berger FG (1987) Evolution of steroid-inducible PR2 mRNA expression in the mouse kidney. Genetics 116:593-599
38. Tseng-Crank J, Schonfeld C, Berger FG (1988) Evolution of androgen-regulated mRNA expression in mouse kidney. Mol Biol Evol 5: 442-454
39. Wang D, Marsh JL, Ayala FJ (1996) Evolutionary changes in the expression pattern of a developmentally essential gene in three Drosophila species. Proc Natl Acad Sci USA 93:7103-7107
40. Watson G, Paigen K (1988) mRNA synthesis rates in vivo for androgen-inducible sequences in mouse kidney. Mol Cell Biol 8:2117-2124
41. Wightman B, Ha I, Ruvkun G (1993) Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans. Cell 75:855-862
42. Wilson AC, Carlson SS (1977) Biochemical evolution. Annu Rev Biochem 46:573-589