Phylogenetic analysis of the S10 gene of field and laboratory strains of bluetongue virus from the United States

Virus Research

Volumn 55, Issue 1, 1998, Pages 15-27

  Pierce, Corinne M ^a   Balasuriya, Udeni B R ^a   MacLachlan, N James ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Bluetongue virus; Phylogenetic analysis; S10 gene segment

Indexed keywords

ARTICLE; BLUETONGUE ORBIVIRUS; GENE SEQUENCE; GENETIC ANALYSIS; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; UNITED STATES;

ANIMALS; BLUETONGUE; BLUETONGUE VIRUS; CATTLE; GENES, VIRAL; GOATS; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; SEQUENCE ANALYSIS, DNA; SEROTYPING; SHEEP; UNITED STATES; VARIATION (GENETICS); VIRAL NONSTRUCTURAL PROTEINS; VIRAL VACCINES;

BLUETONGUE VIRUS;

EID: 0031834664     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(98)00024-0     Document Type: Article

References (50)

1. Akita G.Y., Chinsangaram J., Osburn B.I., Ianconescu M., Kaufman R. Detection of bluetongue virus serogroup by polymerase chain reaction. J. Vet. Diagn. Invest. 4:1992;400-405.
2. L) of equine arteritis virus. Virology. 207:1995;518-527.
3. Bansal, O., Bansal A., Zhao Y., Chatterjee, S., Roy, P., 1996. Mutational analysis of bluetongue virus non-structural protein NS3. Proceedings of American Society for Virology (Abstract), p. 150.
4. Barratt-Boyes S.M., MacLachlan N.J. Pathogenesis of bluetongue virus infection of cattle. J. Am. Vet. Med. Assoc. 206:1995;1322-1329.
5. Chou P.Y., Fasman G.D., Rose G.D. Prediction of the secondary structure of proteins from their amino acid sequence. Adv. Enzymol. 47:1978;45-148.
6. de Mattos C.A., de Mattos C.C., Osburn B.I., MacLachlan N.J. Heterogeneity of the L2 gene of field isolates of bluetongue virus serotype 17 from the San Joaquin Valley of California. Virus. Res. 31:1994;67-87.
7. de Mattos C.C., de Mattos C.A., Osburn B.I., MacLachlan N.J. Evolution of the L2 gene of strains of bluetongue virus serotype 10 isolated in California. Virology. 201:1994;173-177.
8. de Mattos C.C., de Mattos C.A., MacLachlan N.J., Giavedoni L.D., Yilma T., Osburn B.I. Phylogenetic comparison of the S3 gene of United States prototype strains of bluetongue virus with that of field isolates from California. J. Virol. 70:1996;5735-5739.
9. Erasmus B.J. Bluetongue in sheep and goats. Aust. Vet. J. 51:1975;165-170.
10. Felsenstein J. A likelihood approach to character weighting and what it tells us about parsimony and compatibility. Biol. J. Linn. Soc. 16:1981;183-196.
11. Felsenstein J. Evolutionary trees from DNA sequences: a maximum likelihood approach. J. Mol. Evol. 17:1981;368-376.
12. Felsenstein J. Evolutionary trees from gene frequencies and quantitative characters: finding maximum likelihood estimates. Evolution. 35:1981;1229-1242.
13. Felsenstein J. Confidence limits on phylogenies: an approach using bootstrap. Evolution. 39:1985;783-791.
14. Felsenstein, J., 1993. PHYLIP (Phylogeny Inference Package) 3.5c Manual. University of Washington, Department of Genetics SK-50, Seattle, WA 98195, USA.
15. Fitch W.M., Margoliash E. Construction of phylogenetic trees. Science. 155:1967;279-384.
16. Gibbs E.P., Greiner E.C. The epidemiology of bluetongue. Comp. Immunol. Microbiol. Infect. Dis. 17:1994;207-220.
17. Gibbs E.P., Greiner E.C., Taylor W.P., Barber T.L., House J.A., Pearson J.E. Isolation of bluetongue virus serotype 2 from cattle in Florida: serotype of bluetongue virus hitherto unrecognized in the Western Hemisphere. Am. J. Vet. Res. 44:1983;2226-2228.
18. Gould A.R. Nucleotide sequence of the Australian bluetongue virus serotype 1 RNA segment 10. J. Gen. Virol. 69:1988;945-949.
19. Gould A.R., Pritchard L.I. Phylogenetic analysis of the complete nucleotide sequence of the capsid protein (VP3) of Australian epizootic haemorrhagic disease of deer virus (serotype 2) and cognate genes from other orbiviruses. Virus Res. 21:1991;1-18.
20. Heidner H.W., Iezzi L.G., Osburn B.I., MacLachlan N.J. Genetic variation and evolutionary relationships amongst bluetongue viruses endemic in the United States. Virus. Res. 21:1991;91-109.
21. Higgins D.G., Sharp P.M. CLUSTAL: a package for performing multiple sequence alignment on a microcomputer. Gene. 73:1988;237-244.
22. Howerth E.W., Greene C.E., Prestwood A.K. Experimentally induced bluetongue virus infection in white-tailed deer: coagulation, clinical pathologic, and gross pathologic changes. Am. J. Vet. Res. 49:1988;1906-1913.
23. Howerth E.W., Tyler D.E. Experimentally induced bluetongue virus infection in white-tailed deer: ultrastructural findings. Am. J. Vet. Res. 49:1988;1914-1922.
24. Huismans H., Cloete M. A comparison of different cloned bluetongue virus genome segments as probes for the detection of virus specified RNA. Virology. 158:1987;373-380.
25. Hwang G.Y., Yang Y.Y., Chiou J.F., Li J.K. Sequence conservation among the cognate nonstructural NS3/3A protein genes of six bluetongue viruses. Virus Res. 23:1992;151-161.
26. Hyatt A.D., Gould A.R., Coupar B., Eaton B.T. Localization of the non-structural protein NS3 in bluetongue virus-infected cells. J. Gen. Virol. 72:1991;2263-2267.
27. Hyatt A.D., Zhao Y., Roy P. Release of bluetongue virus-like particles from insect cells is mediated by BTV nonstructural protein NS3/NS3A. Virology. 193:1993;592-603.
28. Jensen M.J., Cheney I.W., Thompson L.H., Mecham J.O., Wilson W.C., Yamakawa M., Roy P., Gorman B.M. The smallest gene of the orbivirus, epizootic haemorrhagic disease, is expressed in virus-infected cells as two proteins and the expression differs from that of the cognate gene of bluetongue virus. Virus. Res. 32:1994;353-364.
29. Jin L., Nei M. Limitations of the evolutionary parsimony method of phylogenetic analysis. Mol. Biol. Evol. 7:1990;82-102.
30. Kimura M. A simple model for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
31. Kyte J., Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J. Mol. Biol. 157:1982;105-132.
32. Laegried, W.W., Burrage, T.G., Stone-Marschat, M.A., Skowronek, A.J., Hussein, A., 1995. The S10 gene of African horsesickness virus is a major virulence determinant. Proceedings of the 5th International Symposium on Double - Stranded RNA viruses (Abstract), p. 47.
33. Lee J.W., Roy P. Nucleotide sequence of a cDNA clone of RNA segment 10 of bluetongue virus (serotype 10). J. Gen. Virol. 67:1986;2833-2837.
34. Loudon P.T., Roy P. Assembly of five bluetongue virus proteins expressed by recombinant baculoviruses: Inclusion of the largest protein VP1 in the core and virus-like particles. Virology. 180:1991;798-802.
35. MacLachlan N.J. The pathogenesis and immunology of bluetongue virus infection of ruminants. Comp. Immun. Microbiol. Infect. Dis. 17:1994;197-206.
36. MacLachlan N.J., Rossitto P.V., Heidner H.W., Iezzi L.G., Yilma T.D., DeMaula C.D., Osburn B.I. Variation amongst the neutralizing epitopes of bluetongue viruses isolated in the United States in 1979-1981. Vet. Microbiol. 31:1992;303-316.
37. Martin S.A., Zweerink H.J. Isolation and characterization of two types of bluetongue virus particles. Virology. 50:1972;495-506.
38. Mellor P.S. The replication of bluetongue virus in Culicoides vectors. Curr. Top. Microbiol. Immunol. 162:1990;143-161.
39. Mertens P.P.C., Brown F., Sangar D.V. Assignment of the genome segments of bluetongue virus type 1 to the proteins which they encode. Virology. 135:1984;207-217.
40. Moss S.R., Jones L.D., Nuttall P.A. Comparison of the nonstructural protein, NS3, of tick-borne and insect-borne orbiviruses. Virology. 187:1992;841-844.
41. Moulton J.E. Pathology of bluetongue of sheep. J. Am. Vet. Med. Assoc. 138:1961;493-498.
42. Rossitto P.V., MacLachlan N.J. Neutralizing epitopes of the serotypes of bluetongue virus present in the United States. J. Gen. Virol. 73:1992;1947-1952.
43. Saitou N., Nei M. The neighbor-joining method: a new method for constructing phylogenetic trees. Mol. Biol. Evol. 4:1987;406-425.
44. Spruell J. Malarial catarrhal fever (bluetongue) of sheep in South Africa. J. Comp. Pathol. Ther. 18:1905;321-337.
45. Swofford, D.L., 1989. PAUP User's Manual. Champaign, IL: Illinois Natural History Survey.
46. van Staden V., Stoltz M.A., Huismans H. Expression of nonstructural protein NS3 of African horsesickness virus (AHSV): evidence for a cytotoxic effect of NS3 in insect cells, and characterization of the gene products in AHSV infected Vero cells. Arch. Virol. 140:1995;289-306.
47. Verwoerd D.W., Els H.J., De Villiers E.M., Huismans H. Structure of the bluetongue virus capsid. J. Virol. 10:1972;783-794.
48. Wade-Evans A.M., Mertens P.P.C., Belsham G.J. Sequence of genome segment S9 of bluetongue virus (serotype 1 South Africa) and expression analyses demonstrating that different forms of VP6 are derived from initiation of protein synthesis at two distinct sites. J. Gen. Virol. 73:1992;3023-3026.
49. Wilson I.B.H., Gavel Y., von Heijne G. Amino acid distributions around O-glycosylation sites. Biochem. J. 275:1991;529-534.
50. Wu X., Chen S.-Y., Iwata H., Compans R.W., Roy P. Multiple glycoproteins synthesized by the smallest RNA segment (S10) of bluetongue virus. J. Virol. 66:1992;7104-7112.