-
1
-
-
84986512474
-
CHARMM: A program for macromolecular energy, minimization, and dynamics calculations
-
Brooks, B. R., R. E. Bruccoleri, B. D. Olafson, D. J. States, S. Swaminathan, and M. Karplus. 1983. CHARMM: a program for macromolecular energy, minimization, and dynamics calculations. J. Comp. Chem. 4:187-217.
-
(1983)
J. Comp. Chem.
, vol.4
, pp. 187-217
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
2
-
-
33645961739
-
A smooth particle mesh Ewald method
-
Essman, U., L. Perera, M. L. Berkowitz, T. Darden, H. Lee, and L. G. Pedersen. 1995. A smooth particle mesh Ewald method. J. Chem. Phys. 103:8577-8593.
-
(1995)
J. Chem. Phys.
, vol.103
, pp. 8577-8593
-
-
Essman, U.1
Perera, L.2
Berkowitz, M.L.3
Darden, T.4
Lee, H.5
Pedersen, L.G.6
-
3
-
-
0031268384
-
Computer simulation of a DPPC phospholipid bilayer: Structural changes as a function of molecular surface area
-
Feller, S. E., R. M. Venable, and R. W. Pastor. 1997a. Computer simulation of a DPPC phospholipid bilayer: structural changes as a function of molecular surface area. Langmuir. 13:6555-6561.
-
(1997)
Langmuir.
, vol.13
, pp. 6555-6561
-
-
Feller, S.E.1
Venable, R.M.2
Pastor, R.W.3
-
4
-
-
0030844208
-
Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: Parameterization and comparison with diffraction studies
-
Feller, S. E., D. Yin, R. W. Pastor, and A. D. MacKerell. 1997b. Molecular dynamics simulation of unsaturated lipid bilayers at low hydration: parameterization and comparison with diffraction studies. Biophys. J. 73:2269-2279.
-
(1997)
Biophys. J.
, vol.73
, pp. 2269-2279
-
-
Feller, S.E.1
Yin, D.2
Pastor, R.W.3
MacKerell, A.D.4
-
5
-
-
0001538909
-
Canonical dynamics: Equilibrium phase-space distributions
-
Hoover, W. G. 1995. Canonical dynamics: equilibrium phase-space distributions. Phys. Rev. A. 31:1695-1697.
-
(1995)
Phys. Rev. A.
, vol.31
, pp. 1695-1697
-
-
Hoover, W.G.1
-
6
-
-
0030771815
-
Membrane lateral compressibility determined by NMR and x-ray diffraction - Effect of acyl chain polyunsaturation
-
Koenig, B. W., H. H. Strey, and K. Garwisch. 1997. Membrane lateral compressibility determined by NMR and x-ray diffraction - effect of acyl chain polyunsaturation. Biophys. J. 73:1954-1966.
-
(1997)
Biophys. J.
, vol.73
, pp. 1954-1966
-
-
Koenig, B.W.1
Strey, H.H.2
Garwisch, K.3
-
7
-
-
0023057572
-
Area per molecule and distribution of water in fully hydrated dilauroylphosphatidylethanolamine bilayers
-
McIntosh, T. J., and S. A. Simon. 1986. Area per molecule and distribution of water in fully hydrated dilauroylphosphatidylethanolamine bilayers. Biochemistry. 25:4948-4952.
-
(1986)
Biochemistry
, vol.25
, pp. 4948-4952
-
-
McIntosh, T.J.1
Simon, S.A.2
-
8
-
-
0027251833
-
Area/lipid of bilayers from NMR
-
Nagle, J. F. 1993. Area/lipid of bilayers from NMR. Biophys. J. 64: 1476-1481.
-
(1993)
Biophys. J.
, vol.64
, pp. 1476-1481
-
-
Nagle, J.F.1
-
9
-
-
0017881605
-
Lecithin bilayers: Density measurements and molecular interactions
-
Nagle, J. F., and D. A. Wilkinson. 1978. Lecithin bilayers: density measurements and molecular interactions. Biophys. J. 23:159-175.
-
(1978)
Biophys. J.
, vol.23
, pp. 159-175
-
-
Nagle, J.F.1
Wilkinson, D.A.2
-
11
-
-
0030933013
-
Determination of component volumes of lipid bilayers from simulation
-
Petrache, H. I., S. E. Feller, and J. F. Nagle. 1997. Determination of component volumes of lipid bilayers from simulation. Biophys. J. 72: 2237-2242.
-
(1997)
Biophys. J.
, vol.72
, pp. 2237-2242
-
-
Petrache, H.I.1
Feller, S.E.2
Nagle, J.F.3
-
12
-
-
0003474751
-
-
Cambridge University Press, New York
-
Press, W. H., S. A. Teukolsky, W. T. Vettering, and B. P. Flannery. 1992. Numerical Recipes. Cambridge University Press, New York.
-
(1992)
Numerical Recipes
-
-
Press, W.H.1
Teukolsky, S.A.2
Vettering, W.T.3
Flannery, B.P.4
-
13
-
-
33646940952
-
Numerical integration of the cartesian equations of motion of a system with constraints: Molecular dynamics of n-alkanes
-
Ryckaert, J. P., C. Cicotti, and H. J. C. Berendsen. 1977. Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes. J. Comp. Chem. 23:327-341.
-
(1977)
J. Comp. Chem.
, vol.23
, pp. 327-341
-
-
Ryckaert, J.P.1
Cicotti, C.2
Berendsen, H.J.C.3
-
14
-
-
0002062192
-
Empirical potential energy function for phospholipids: Criteria for parameter optimization and applications
-
K. Merz, and B. Roux, editors. Birkhäuser, Boston
-
Schlenkrich, M., J. Brickman, A. D. MacKerell, and M. Karplus. 1996. Empirical potential energy function for phospholipids: criteria for parameter optimization and applications. In Biological Membranes: A Molecular Perspective from Computation and Experiment. K. Merz, and B. Roux, editors. Birkhäuser, Boston. 31-81.
-
(1996)
Biological Membranes: A Molecular Perspective from Computation and Experiment
, pp. 31-81
-
-
Schlenkrich, M.1
Brickman, J.2
MacKerell, A.D.3
Karplus, M.4
-
15
-
-
0016283654
-
Dynamic structure of fatty acyl chains in a phospholipid bilayer measured by DMR
-
Seelig, A., and J. Seelig. 1974. Dynamic structure of fatty acyl chains in a phospholipid bilayer measured by DMR. Biochemistry. 13:4839-4845.
-
(1974)
Biochemistry
, vol.13
, pp. 4839-4845
-
-
Seelig, A.1
Seelig, J.2
-
16
-
-
0014146912
-
Phase equilibria and structure of dry and hydrated egg lecithin
-
Small, D. M. 1967. Phase equilibria and structure of dry and hydrated egg lecithin. J. Lipid Res. 8:551-557.
-
(1967)
J. Lipid Res.
, vol.8
, pp. 551-557
-
-
Small, D.M.1
-
18
-
-
0000014011
-
Order and disorder in fully hydrated unoriented bilayers of gel phase DPPC
-
Sun, W. J., R. M. Suter, M. A. Knewtson, C. R. Worthington, S. Tristram-Nagle, R. Zhang, and J. F. Nagle. 1994. Order and disorder in fully hydrated unoriented bilayers of gel phase DPPC. Phys. Rev. E. 49: 4665-4676.
-
(1994)
Phys. Rev. E.
, vol.49
, pp. 4665-4676
-
-
Sun, W.J.1
Suter, R.M.2
Knewtson, M.A.3
Worthington, C.R.4
Tristram-Nagle, S.5
Zhang, R.6
Nagle, J.F.7
-
19
-
-
0023423499
-
Partial specific volumes of lipid and water in mixtures of egg lecithin and water
-
White, S. H., R. E. Jacobs, and G. I. King. 1987. Partial specific volumes of lipid and water in mixtures of egg lecithin and water. Biophys. J. 52:663-665.
-
(1987)
Biophys. J.
, vol.52
, pp. 663-665
-
-
White, S.H.1
Jacobs, R.E.2
King, G.I.3
-
20
-
-
0026048378
-
Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. I. Scaling of neutron data and the distributions of double bonds and water
-
Wiener, M. C., G. I. King, and S. H. White. 1991. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. I. Scaling of neutron data and the distributions of double bonds and water. Biophys. J. 60:568-576.
-
(1991)
Biophys. J.
, vol.60
, pp. 568-576
-
-
Wiener, M.C.1
King, G.I.2
White, S.H.3
-
21
-
-
0024290922
-
Specific volumes of lipids in fully hydrated bilayer dispersions
-
Wiener, M. C., S. Tristram-Nagle, D. A. Wilkinson, L. E. Campbell, and J. F. Nagle. 1988. Specific volumes of lipids in fully hydrated bilayer dispersions. Biochim. Biophys. Acta. 938:135-142.
-
(1988)
Biochim. Biophys. Acta
, vol.938
, pp. 135-142
-
-
Wiener, M.C.1
Tristram-Nagle, S.2
Wilkinson, D.A.3
Campbell, L.E.4
Nagle, J.F.5
-
22
-
-
0026011502
-
Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. I. Fluid bilayer models and the limits of resolution
-
Wiener, M. C., and S. H. White. 1991a. Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. I. Fluid bilayer models and the limits of resolution. Biophys. J. 59:162-173.
-
(1991)
Biophys. J.
, vol.59
, pp. 162-173
-
-
Wiener, M.C.1
White, S.H.2
-
23
-
-
0025964363
-
Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method
-
Wiener, M. C., and S. H. White. 1991b. Fluid bilayer structure determination by the combined use of x-ray and neutron diffraction. II. "Composition-space" refinement method. Biophys. J. 59:174-185.
-
(1991)
Biophys. J.
, vol.59
, pp. 174-185
-
-
Wiener, M.C.1
White, S.H.2
-
24
-
-
0026683431
-
Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups
-
Wiener, M. C., and S. H. White. 1992a. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. II. Distribution and packing of terminal methyl groups. Biophys. J. 61:428-433.
-
(1992)
Biophys. J.
, vol.61
, pp. 428-433
-
-
Wiener, M.C.1
White, S.H.2
-
25
-
-
0026729232
-
Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure
-
Wiener, M. C., and S. H. White. 1992b. Structure of a fluid dioleoylphosphatidylcholine bilayer determined by joint refinement of x-ray and neutron diffraction data. III. Complete structure. Biophys. J. 61: 434-447.
-
(1992)
Biophys. J.
, vol.61
, pp. 434-447
-
-
Wiener, M.C.1
White, S.H.2
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