Design and evaluation of a Lactobacillus group-specific ribosomal RNA-targeted hybridization probe and its application to the study of intestinal microecology in pigs

Systematic and Applied Microbiology

Volumn 21, Issue 2, 1998, Pages 291-296

  Sghir, Abdelghani ^a   Antonopoulos, Dion ^a   Mackie, Roderick I ^a  

^a UNIVERSITY OF ILLINOIS AT URBANA CHAMPAIGN   (United States)

Author keywords

Gastrointestinal tract; Lactobacillus; Oligonucleotide probe; Pigs

Indexed keywords

RIBOSOME RNA; RNA 16S;

ARTICLE; DATA BASE; DUODENUM; INTESTINE FLORA; LACTOBACILLUS; NONHUMAN; OLIGONUCLEOTIDE PROBE; PRIORITY JOURNAL; RNA HYBRIDIZATION; RNA SEQUENCE; SPECIES DIFFERENCE; STOMACH; SWINE; WEANING;

BACTERIA (MICROORGANISMS); LACTOBACILLUS; NEGIBACTERIA; SUS SCROFA;

EID: 0031820475     PISSN: 07232020     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0723-2020(98)80036-2     Document Type: Article

References (25)

1. ALM, E., OERTHER, D. B., LARSEN, N., STAHL, D. A., RASKIN, L.: The oligonucleotide probe database. Appl. Environ. Microbiol. 10, 3557-3559 (1996).
2. AMANN, R. I., KRUMHOLZ, L., STAHL, D. A.: Fluorescent oligonucleotide probing of whole cells for determinative, phylogenetic, and environmental studies in microbiology. J. Bacteriol. 172, 762-770 (1990).
3. ASBY, C. B., MCEWAN, A. D., WILSON, S. M.: Effect of treatment of lambs with probiotic, containing lactic acid bacteria. Vet. Rec. 124, 588-589 (1989).
4. BILGIL, S. F., MORAN, T.: Influence of whey and probiotic-supplemented withdrawal feed on the retention of Salmonella incubated in market age broilers. Poult. Sci. 69, 1670-1674 (1990).
5. BORRIELLO, S. P., STEPHENS, S.: The development of the infant gut flora and the medical microbiology of infant botulism and necrotizing enterocolitis, pp. 1-26. In: Microbes and infections of the gut C. S. Goodwin, ed.). Oxford, Blackwell Scientific Publications (1984).
6. COLLINS, M.D., RODRIGUES, U., ASH, C., AGUIRRE, M., FARROW, J. A. E., MARTINEZ-MURCIA, A., PHILIPS, B. A., WILLIAMS, A. M., WALLBANKS, S.: Phylogenetic analysis of the genus Lactobacillus and related lactic acid bacteria as determined by reverse transcriptase sequencing of 16S rRNA. FEMS Microbiol. Lett. 77, 5-12 (1991).
7. DELLY, M., MOLLET, B., HOTTINGER, H.: A DNA probe for Lactobacillus delbrueckeii. Appl. Environ. Microbiol. 56, 1967-1970 (1990).
8. FULLER, R., P. A. BARROW and B. E. BROOKER: Bacteria associated with the gastric epithelium of neonatal pigs. Appl. Environ. Microbiol. 35, 582-591 (1978).
9. HENSIEK, R., KRUPP, G., STACKEBRANDT, E.: Development of diagnostic oligonucleotide probes for four Lactobacillus species occurring in the intestinal tract. Syst. Appl. Microbiol. 15, 123-128 (1992).
10. HENRIKSSON, A., ANDRE, L., CONWAY, P. L.: Distribution of lactobacilli in the porcine gastrointestinal tract. FEMS Microbiol. Ecol. 16, 55-60 (1995).
11. HERTEL, C., LUDWIG, W., OBST, M., VOGEL, R. F., HAMMES, W. P., SCHLEIFER, K. H.: 23S rRNA-targeted oligonucleotide probes for the rapid identification of meat lactobacilli. Syst. Appl. Microbiol. 14, 173-177 (1991).
12. JONSSON, E., CONWAY, P. L.: Probiotics for pigs. In: Fuller R, ed. Probiotics, The Scientific Basis, pp. 87-110. London: Chapman and Hall. (1992)
13. KANDLER, O., WEISS, N.: Genus Lactobacillus. pp. 1208-1234. In Bergey's Manual of Systematic Bacteriology, Vol. 2 (Sneath, P. H. A., Mair, N. S., Sharpe, M. E., Holt, J. G., eds.), Baltimore, The Williams and Wilkins Co. (1986).
14. MACKIE, R. I., F. M. C. GILCHRIST, A. M. ROBBERTS, P. E. HANNAH, and H. M. SCHWARTZ: Microbiological and chemical changes in the rumen during stepwise adaptation of sheep to high concentrate diets. J. Agric. Sci. (Cambridge) 90, 241-254 (1978).
15. MCGILLIVERY, D. J., CRANWELL, P. D.: Anaerobic microflora associated with the pars oesophagea of the pig. Res. Vet. Sci. 53, 100-115 (1992).
16. OLSEN, G. J., LANE, D. J., GIOVANNI, S. J., PACE, N. R.: Microbial ecology and evolution: A ribosomal RNA approach. Annu. Rev. Microbial. 40, 337-365 (1986).
17. OLSEN, G. J., LARSEN, N. WOESE, C. R.: The Ribosomal database project. Nucleic Acids Res. 19, 2017-2021 (1991).
18. PETRICK, H. A. R., AMBROSIO, R. E., HOLZAPFEL, W. H.: Isolation of a DNA probe for Lactobacillus curvatus. Appl. Environ. Microbiol. 54, 405-408 (1988).
19. PEDERSON, K., TANNOCK, G. W.: Colonization of the porcine gastrointestinal tract by lactobacilli. Appl. Environ. Microbiol. 55, 279-283 (1989).
20. PILLOUD, N., MOLLET, B.: DNA probes for the detection of Lactobacillus helveticus. Syst. Appl. Microbiol. 13, 345-349 (1990).
21. PRITCHARD, G., COOLBEAR, T.: The physiology and biochemistry of the proteolytic system in lactic acid bacteria. FEMS Microbiol. Rev. 12, 179-206 (1993).
22. SILLIKER, J. H.: Fats and oils, pp. 752-777. In: Microbial ecology of foods (J. H. Silliker, R. P. Elliot, A. C. Baird-Parker, F. L. Bryan, J. H. B. Christikan, D. S. Clark, J. C. Olson, T. A. Roberts, eds.) New York, Academic press (1980).
23. STAHL, D. A., FLESHER, B., MANSFIELD, H. R., MONTGOMERY, L.: Use of phylogenetically based hybridization probes for studies of ruminal microbial ecology. Appl. Environ. Microbiol. 54, 1079-1084 (1988).
24. TANNOCK, G.: The microecology of lactobacilli inhabiting the gastrointestinal tract. Adv. Microb. Ecol. 11, 147-171 (1990).
25. TANNOCK, G.: Probiotic properties of lactic-acid bacteria: plenty of scope for fundamental R & D. TIBTECH 15, 270-274 (1991).