Parallel production of oligonucleotide arrays using membranes and reagent jet printing

BioTechniques

Volumn 25, Issue 5, 1998, Pages 886-890

  Stimpson, Donald I ^a   Cooley, Patrick W ^a,b   Knepper, Sheila M ^a   Wallace, David B ^a,b  

^a Barclay College   (United States)

^b MicroFab Corporation   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

ARTICLE; DNA DETERMINATION; DNA HYBRIDIZATION; MEMBRANE; PRINTING;

EID: 0031795422     PISSN: 07366205     EISSN: None     Source Type: Journal    
DOI: 10.2144/98255rr03     Document Type: Article

References (18)

1. Alderton, R.P., J. Kitau and S. Beck. 1994. Automated DNA hybridization. Anal. Biochem. 218:98-102.
2. Blanchard, A.P., R.J. Kaiser and L.E. Hood. 1996. High-density oligonucleotide arrays. Biosens. Bioelectron. 11:687-690.
3. Broude, N.E., T. Sano, C.L. Smith and C.R. Cantor. 1994. Enhanced DNA sequencing by hybridization. Proc. Natl. Acad. Sci. USA 91:3072-3076.
4. DeMarchi, J.M., C.S. Richards, R.G. Fenwick, R. Pace and A.L. Beaudet. 1994. A robotics-assisted procedure for large scale cystic fibrosis mutation analysis. Hum. Mutat. 4:281-290.
5. Drmanac, R., S. Drmanac, I. Labat, R. Crkvenjakov, A. Vicentic and A. Gemmell. 1992. Sequencing by hybridization: towards an automated sequencing of one million M13 clones arrayed on membranes. Electrophoresis 13:566-573.
6. Drmanac, R., S. Drmanac, A. Strezoska, T. Paunesku, I. Labat, M. Zeremski, J. Snoddy, W.K. Funkhouser et al. 1993. DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing. Science 260:1649-1652.
7. Eggers, M., M. Hogan, R.K. Reich, J. Lamture, D. Ehrlich, M. Hollis, B. Kosicki, T. Powdrill et al. 1994. A microchip for quantitative detection of molecules utilizing luminescent and radioisotope reporter groups. BioTechniques 17:516-525.
8. Ferguson, J.A., T.C. Boles, C.P. Adams and D.R. Walt. 1996. A fiber-optic DNA biosensor microarray for the analysis of gene expression. Nature Biotech. 14:1681-1684.
9. Foder, S.P.A., J.L. Read, M.C. Pirrung, L. Stryer, A.T. Lu and D. Solas. 1991. Light-directed, spatially addressable parallel chemical synthesis. Science 251:767-773.
10. Frens, G. 1973. Controlled nucleation for the regulation of the particle size in monodisperse gold suspensions. Nature 241:20-22.
11. Gray, D.E., S.C. Case-Green, T.S. Fell, PJ. Dobson and E.M. Southern. 1997. Ellipsometric and interferometric characterization of DNA probes immobilized on a combinatorial array. Langmuir 13:2833-2842.
12. Khrapko, K.R., Y.P. Lysov, A.A. Khorlin, I.B. Ivannov, G.M. Yershov, S.K. Vasilenko, V.L. Florentiev and A.D. Mirzabekov. 1991. A method for DNA sequencing by hybridization with oligonucleotide matrix. J. DNA Seq. Mapping 1:375-388.
13. Lashkari, D.A., J.L. DeRisi, J.H. McCusker, A.F. Namath, C. Gentile, S.Y. Hwang, P.O. Brown and R.W. Davis. 1997. Yeast microarrays for genome wide parallel genetic and gene expression analysis. Proc. Natl. Acad. Sci. USA 94:13057-13062.
14. Saiki, R.K., P.S. Walsh, C.H. Levenson and H.A. Erlich. 1989. Genetic analysis of amplified DNA with immobilized sequence-specific oligonucleotide probes. Proc. Natl. Acad. Sci. USA 86:6230-6234.
15. Schena, M., D. Shalon, R.W. Davis and P.O. Brown. 1995. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270:467-470.
16. Shchepinov, M.S., S.C. Case-Green and E.M. Southern. 1997. Steric factors influencing hybridization of nucleic acids to oligonucleotide arrays. Nucleic Acids Res. 25:1155-1162.
17. Stimpson, D.I. and J. Gordon. 1996. The utility of optical waveguide DNA array hybridization and melting for rapid resolution of mismatches, and for detection of minor mutant components in the presence of a majority of wild type sequence: statistical model and supporting data. Genet. Anal. 13:73-80.
18. Stimpson, D.I., J.V. Hoijer, W.T. Hsieh, C. Jou, J. Gordon, T. Theriault, R. Gamble and J.D. Baldeschwieler. 1995. Real-time detection of DNA hybridization and melting on oligonucleotide arrays by using optical wave guides. Proc. Natl. Acad. Sci. USA 92:6379-6383.