The role of surface lysines in pyrimidine (6-4) pyrimidone photoproduct binding by a high-affinity antibody

Protein Engineering

Volumn 11, Issue 11, 1998, Pages 1089-1092

  Kobayashi, Hiroyuki ^a   Morioka, Hiroshi ^a   Nikaido, Osamu ^b   Stewart, Jon D ^c   Ohtsuka, Eiko ^a  

^a HOKKAIDO UNIVERSITY   (Japan)

^b KANAZAWA UNIVERSITY   (Japan)

^c University of Florida ^*  (United States)

Author keywords

Antibody antigen interactions; DNA photoproducts; Electrostatic interactions; Site directed mutagenesis

Indexed keywords

ALANINE; DNA; DNA ANTIBODY; LYSINE; PYRIMIDINE; PYRIMIDINONE DERIVATIVE;

ANTIBODY AFFINITY; ANTIGEN RECOGNITION; ARTICLE; BINDING KINETICS; CONTROLLED STUDY; LIGHT DAMAGE; MUTANT; PRIORITY JOURNAL; STRUCTURE ACTIVITY RELATION;

EID: 0031793064     PISSN: 02692139     EISSN: None     Source Type: Journal    
DOI: 10.1093/protein/11.11.1089     Document Type: Article

References (34)

1. Antosiewicz, J., Wlodek, S.T. and McCammon, J.A. (1996) Biopolymers, 39, 85-94.
2. Brard, F., Jovelin, F., Petit, S., Tron, F. and Gilbert, D. (1996) Eur. J. Immunol., 26, 1587-1594.
3. Brard, F., Petit, S., Coquerel, G., Gilbert, D., Koutouzov, S., Perez, G. and Tron, F. (1997) Mol. Immunol., 34, 793-807.
4. Cygler, M., Boodhoo, A., Lee, J.S. and Anderson, W.F. (1987) J. Biol. Chem., 262, 643-648.
5. Davies, D.R., Padlan, E.A. and Sheriff, S. (1990) Annu. Rev. Biochem., 59, 439-473.
6. Eggset, G., Volden, G. and Krokan, H. (1983) Carcinogenesis, 4, 745-750.
7. Friedberg, E.C., Walker, G.C. and Siede, W. (1995) DNA Repair and Mutagenesis. American Society for Microbiology, Washington, DC.
8. Getzoff, E.D., Cabelli, D.E., Fisher, C.L., Parge, H.E., Viezzoli, M.S., Banci, L. and Hallewell, R.A. (1992) Nature, 358, 347-351.
9. Herron, J.N., He, X.M., Ballard, D.W., Blier, P.R., Pace, P.E., Bothwell, A.L.M. and Voss, E.W.,Jr. (1991) Proteins, 11, 159-175.
10. Higuchi, R. (1989) In Erlich, H.A. (ed.), PCR Technology. Stockton Press, New York, pp. 61-70.
11. Kabat, E.A., Wu, T.T., Perry, H.M., Gottesman, K.S. and Foeller, C. (1992) Sequences of Proteins of Immunological Interest. National Institutes of Health, Bethesda, MD.
12. Kim, J.-K., Patel, D. and Choi, B.-S. (1995) Photochem. Photobiol., 62, 44-50.
13. Kobayashi, H., Morioka, H., Torizawa, T., Kato, K., Shimada, I., Nikaido, O. and Ohtsuka, E. (1998) J. Biochem., 123, 182-188.
14. Kozack, R.E., d'Mello, M.J. and Subramaniam, S. (1995) Biophys. J., 68, 807-814.
15. Matsunaga, T., Hatakeyama, Y., Ohta, M., Mori, T. and Nikaido, O. (1993) Photochem. Photobiol., 57, 934-940.
16. Mitchell, D.L. and Clarkson, J.M. (1981) Biochim. Biophys. Acta, 655, 54-60.
17. Mizuno, T., Matsunaga, T., Ihara, M. and Nikaido, O. (1991) Mutat. Res., 254, 175-184.
18. Mol, C.D., Muir, A.K.S., Cygler, M., Lee, J.S. and Anderson, W.F. (1994) J. Biol. Chem., 269, 3615-3622.
19. Mori, T., Matsunaga, J., Hirose, T. and Nikaido, O. (1988) Mutat. Res., 194, 263-270.
20. Mori, T., Nakane, M., Hattori, T., Matsunaga, T., Ihara, M. and Nikaido, O. (1991) Photochem. Photobiol., 54, 225-232.
21. Morioka, H., Miura, H., Kobayashi, H., Koizumi, T., Fujii, K., Asano, K., Matsunaga, T., Nikaido, O., Stewart, J.D. and Ohtsuka, E. (1998) Biochim. Biophys. Acta, 1385, 17-32.
22. Nicholls, A., Sharp, K. and Honig, B. (1991) Proteins Struct. Funct. Genet., 11, 281-296.
23. Radic, M.Z. and Weigert, M. (1994) Annu. Rev. Immunol., 12, 487-520.
24. Radic, M.Z., Mackle, J., Erikson, J., Mol, C., Anderson, W.F. and Weigert, M. (1993) J. Immunol., 150, 4966-4977.
25. Raman, C.S., Jemmerson, R., Nall, B.T. and Allen, M.J. (1992) Biochemistry, 31, 10370-10379.
26. Roza, L., van der Wulp, K.J.M., MacFarlane, S.J., Lohman, P.H.M. and Baan, R.A. (1988) Photochem. Photobiol., 48, 627-633.
27. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning. A Laboratory Manual, 2 ed. Cold Spring Harbor, Cold Spring Harbor.
28. Sancar, A. (1996) Annu. Rev. Biochem., 65, 43-81.
29. von Hippel, P.H. and Berg, O.G. (1986) In Guschlbauer, W. and Saenger, W. (eds), DNA-Ligand Interactions. From Drugs to Proteins. Plenum, New York, pp. 159-171.
30. Wade, R.C., Luty, B.A., Demchuk, E., Madura, J.D., Davis, M.E., Briggs, J.M. and McCammon, J.A. (1994) Nature Struct. Biol., 1, 65-69.
31. Wani, A.A., Gibson-D'Ambrosio, R.E. and D'Ambrosio, S.M. (1984) Photochem. Photobiol., 40, 465-471.
32. Whitlow, M. and Filpula, D. (1991) Methods: A Companion to Methods in Enzymology, 2, 97-105.
33. Wood, R.D. (1996) Annu. Rev. Biochem., 65, 135-167.
34. Zhou, H.-X., Wong, K.-Y. and Vijayakumar, M. (1997) Proc. Natl Acad. Sci. USA, 94, 12372-12377.