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Volumn 7, Issue 6, 1998, Pages 1458-1468

Prediction of functional residues in water channels and related proteins

Author keywords

Aquaporin; Correspondence analysis; Glycerol facilitator; MIP family; Multiple sequence alignment; Protein function prediction

Indexed keywords

AQUAPORIN; GLYCEROL; WATER;

EID: 0031777369     PISSN: 09618368     EISSN: None     Source Type: Journal    
DOI: 10.1002/pro.5560070623     Document Type: Article
Times cited : (201)

References (54)
  • 3
    • 0029883930 scopus 로고    scopus 로고
    • Structure of aquaporin-2 vasopressin water channel
    • Bai L, Fushimi K, Sasaki S, Marumo F. 1996 Structure of aquaporin-2 vasopressin water channel. J Biol Chem 271:5171-5176.
    • (1996) J Biol Chem , vol.271 , pp. 5171-5176
    • Bai, L.1    Fushimi, K.2    Sasaki, S.3    Marumo, F.4
  • 8
    • 0028787084 scopus 로고
    • Molecular cloning and characterization of AQP2, a water channel from Escherichia coli
    • Calamita G, Bishai WR, Preston GM, Guggino WB, Agre P. 1995. Molecular cloning and characterization of AQP2, a water channel from Escherichia coli. J Biol Chem 270:29063-29066.
    • (1995) J Biol Chem , vol.270 , pp. 29063-29066
    • Calamita, G.1    Bishai, W.R.2    Preston, G.M.3    Guggino, W.B.4    Agre, P.5
  • 10
    • 0027459639 scopus 로고
    • Recognition of tRNAs by aminoacyl-tRNA synthetases
    • Cavarelli J, Moras D. 1993. Recognition of tRNAs by aminoacyl-tRNA synthetases. FASEB J 7:79-86.
    • (1993) FASEB J , vol.7 , pp. 79-86
    • Cavarelli, J.1    Moras, D.2
  • 12
    • 0028675704 scopus 로고
    • The plasma membrane of Arabidopsis thaliana contains a mercury-insensitive aquaporin that is a homolog of the tonoplast water channel protein TIP
    • Daniels MJ, Mirkov TE, Chrispeels MJ. 1994. The plasma membrane of Arabidopsis thaliana contains a mercury-insensitive aquaporin that is a homolog of the tonoplast water channel protein TIP. Plant Physiol 106:1325-1333.
    • (1994) Plant Physiol , vol.106 , pp. 1325-1333
    • Daniels, M.J.1    Mirkov, T.E.2    Chrispeels, M.J.3
  • 13
    • 0000228203 scopus 로고
    • A model of evolutionary changes in proteins
    • Dayhoff MO, ed. Washington, DC: National Biochemical Research Foundation
    • Dayhoff MO, Schwartz RM, Orcutt BC. 1978. A model of evolutionary changes in proteins. In Dayhoff MO, ed. Atlas of protein sequence and structure, vol 5, suppl 3. Washington, DC: National Biochemical Research Foundation. pp 345-358.
    • (1978) Atlas of Protein Sequence and Structure , vol.5 , Issue.3 SUPPL. , pp. 345-358
    • Dayhoff, M.O.1    Schwartz, R.M.2    Orcutt, B.C.3
  • 14
    • 0021760092 scopus 로고
    • A comprehensive set of sequence analysis programs for the VAX
    • Devereux J, Haeberli P, Smithies O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res 12:387-395.
    • (1984) Nucleic Acids Res , vol.12 , pp. 387-395
    • Devereux, J.1    Haeberli, P.2    Smithies, O.3
  • 15
    • 0021712623 scopus 로고
    • The major intrinsic protein (MIP) of the bovine lens fiber membrane: Characterization and structure based on cDNA cloning
    • Gorin MB, Yancey SB, Cline J, Revel JP, Horwitz J. 1984. The major intrinsic protein (MIP) of the bovine lens fiber membrane: Characterization and structure based on cDNA cloning. Cell 39:49-59.
    • (1984) Cell , vol.39 , pp. 49-59
    • Gorin, M.B.1    Yancey, S.B.2    Cline, J.3    Revel, J.P.4    Horwitz, J.5
  • 16
    • 0023057529 scopus 로고
    • Sigma factors from E. coli, B. subtilis, phage SPO1, and phage T4 are homologous proteins
    • Gribskov M, Burgess RR. 1986. Sigma factors from E. coli, B. subtilis, phage SPO1, and phage T4 are homologous proteins. Nucleic Acids Res 14:6745-6763.
    • (1986) Nucleic Acids Res , vol.14 , pp. 6745-6763
    • Gribskov, M.1    Burgess, R.R.2
  • 17
    • 0026517122 scopus 로고
    • Calcium channel characteristics conferred on the sodium channel by single mutations
    • Heinemann SH, Terlau H, Stuhmer W, Imoto K, Numa S. 1992. Calcium channel characteristics conferred on the sodium channel by single mutations. Nature 356:441-443.
    • (1992) Nature , vol.356 , pp. 441-443
    • Heinemann, S.H.1    Terlau, H.2    Stuhmer, W.3    Imoto, K.4    Numa, S.5
  • 18
    • 0019195926 scopus 로고
    • Substrate specificity and transport properties of the glycerol facilitator of Escherichia coli
    • Heller KB, Lin ECC, Wilson TH. 1980. Substrate specificity and transport properties of the glycerol facilitator of Escherichia coli. J Bacteriol 144:274-278.
    • (1980) J Bacteriol , vol.144 , pp. 274-278
    • Heller, K.B.1    Lin, E.C.C.2    Wilson, T.H.3
  • 19
    • 0026458378 scopus 로고
    • Amino acid substitution matrices from protein blocks
    • Henikoff S, Henikoff GJ. 1992. Amino acid substitution matrices from protein blocks. Proc Natl Acad Sci USA 89:10915-10919.
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 10915-10919
    • Henikoff, S.1    Henikoff, G.J.2
  • 20
    • 0000448982 scopus 로고
    • Prediction of protein antigenic determinants from amino acid sequences
    • Hopp TP, Woods KR. 1981. Prediction of protein antigenic determinants from amino acid sequences. Proc Natl Acad Sci USA 78:3824-3828.
    • (1981) Proc Natl Acad Sci USA , vol.78 , pp. 3824-3828
    • Hopp, T.P.1    Woods, K.R.2
  • 21
    • 0028304908 scopus 로고
    • On global sequence alignment
    • Huang X. 1994. On global sequence alignment. Comput Applic Biosci 10:227-235.
    • (1994) Comput Applic Biosci , vol.10 , pp. 227-235
    • Huang, X.1
  • 22
    • 0030860531 scopus 로고    scopus 로고
    • Cloning and functional expression of a new water channel abundantly expressed in the testis permeable to water, glycerol, and urea
    • Ishibashi K, Kuwahara M, Gu Y, Kageyama Y, Tohsaka A, Suzuki F, Marumo F, Sasaki S. 1997a. Cloning and functional expression of a new water channel abundantly expressed in the testis permeable to water, glycerol, and urea. J Biol Chem 272:20782-20786.
    • (1997) J Biol Chem , vol.272 , pp. 20782-20786
    • Ishibashi, K.1    Kuwahara, M.2    Gu, Y.3    Kageyama, Y.4    Tohsaka, A.5    Suzuki, F.6    Marumo, F.7    Sasaki, S.8
  • 24
  • 25
    • 0029148735 scopus 로고
    • A synechococcus gene encoding a putative pore-forming intrinsic membrane protein
    • Kashiwagi S, Kanamaru K, Mizuno T. 1995. A synechococcus gene encoding a putative pore-forming intrinsic membrane protein. Biochim Biophys Acta 1237:189-192.
    • (1995) Biochim Biophys Acta , vol.1237 , pp. 189-192
    • Kashiwagi, S.1    Kanamaru, K.2    Mizuno, T.3
  • 26
    • 0029942399 scopus 로고    scopus 로고
    • Pathophysiology of the aquaporin water channels
    • King LS, Agre P. 1996. Pathophysiology of the aquaporin water channels. Annu Rev Physiol 58:619-648.
    • (1996) Annu Rev Physiol , vol.58 , pp. 619-648
    • King, L.S.1    Agre, P.2
  • 27
    • 0029086075 scopus 로고
    • Ion, water and neutral solute transport in Xenopus oocytes expressing frog lens MIP
    • Kushmerick C, Rice SJ, Baldo GJ, Haspel HC, Mathias RT. 1995. Ion, water and neutral solute transport in Xenopus oocytes expressing frog lens MIP. Exp Eye Res 61:351-362.
    • (1995) Exp Eye Res , vol.61 , pp. 351-362
    • Kushmerick, C.1    Rice, S.J.2    Baldo, G.J.3    Haspel, H.C.4    Mathias, R.T.5
  • 28
    • 0020475449 scopus 로고
    • A simple method for displaying the hydropathy character of a protein
    • Kyte J, Doolittle RF. 1982. A simple method for displaying the hydropathy character of a protein. J Mol Biol 157:105-132.
    • (1982) J Mol Biol , vol.157 , pp. 105-132
    • Kyte, J.1    Doolittle, R.F.2
  • 30
    • 0028863562 scopus 로고
    • Phosphorylation of nodulin 26 on serine 262 affects its voltage-sensitive channel activity in planar lipid bilayers
    • Lee JW, Zhang Y, Weaver CD, Shomer NH, Louis CF, Roberts DM. 1995. Phosphorylation of nodulin 26 on serine 262 affects its voltage-sensitive channel activity in planar lipid bilayers. J Biol Chem 270:27051-27057.
    • (1995) J Biol Chem , vol.270 , pp. 27051-27057
    • Lee, J.W.1    Zhang, Y.2    Weaver, C.D.3    Shomer, N.H.4    Louis, C.F.5    Roberts, D.M.6
  • 31
    • 0027764344 scopus 로고
    • Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation
    • Livingstone CD, Barton GJ. 1993. Protein sequence alignments: A strategy for the hierarchical analysis of residue conservation. Comput Applic Biosc 9:745-756.
    • (1993) Comput Applic Biosc , vol.9 , pp. 745-756
    • Livingstone, C.D.1    Barton, G.J.2
  • 32
    • 0028947362 scopus 로고
    • Fps1, a yeast member of the MIP family of channel proteins, is a facilitator for glycerol uptake and efflux and is inactive under osmotic stress
    • Luyten K, Albertyn J, Skibbe WF, Prior BA, Ramos J, Thevelein JM, Hohmann S. 1995. Fps1, a yeast member of the MIP family of channel proteins, is a facilitator for glycerol uptake and efflux and is inactive under osmotic stress. EMBO J 14:1360-1371.
    • (1995) EMBO J , vol.14 , pp. 1360-1371
    • Luyten, K.1    Albertyn, J.2    Skibbe, W.F.3    Prior, B.A.4    Ramos, J.5    Thevelein, J.M.6    Hohmann, S.7
  • 33
    • 0027192036 scopus 로고
    • The vacuolar membrane protein γ-TIP creates water specific channels in Xenopus oocytes
    • Maurel C, Reizer J, Schroeder JI, Chrispeels MJ. 1993. The vacuolar membrane protein γ-TIP creates water specific channels in Xenopus oocytes. EMBO J 12:2241-2247.
    • (1993) EMBO J , vol.12 , pp. 2241-2247
    • Maurel, C.1    Reizer, J.2    Schroeder, J.I.3    Chrispeels, M.J.4
  • 34
    • 0030917014 scopus 로고    scopus 로고
    • Purified vesicles of tobacco cell vacuolar and plasma membranes exhibit dramatically different water permeability and water channel activity
    • Maurel C, Tacnet F, Guclu J, Guern J, Ripoche P. 1997. Purified vesicles of tobacco cell vacuolar and plasma membranes exhibit dramatically different water permeability and water channel activity. Proc Natl Acad Sci USA 94:7103-7108
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 7103-7108
    • Maurel, C.1    Tacnet, F.2    Guclu, J.3    Guern, J.4    Ripoche, P.5
  • 39
    • 0029910115 scopus 로고    scopus 로고
    • Phylogenetic characterization of the MIP family of transmembrane channel proteins
    • Park JH, Saier HM Jr. 1996. Phylogenetic characterization of the MIP family of transmembrane channel proteins. J Membrane Biol 153:171-180.
    • (1996) J Membrane Biol , vol.153 , pp. 171-180
    • Park, J.H.1    Saier Jr., H.M.2
  • 40
    • 0028279520 scopus 로고
    • Prediction of transmembrane segments in proteins utilising multiple sequence alignments
    • Persson B, Argos P. 1994. Prediction of transmembrane segments in proteins utilising multiple sequence alignments. J Mol Biol 237:182-192.
    • (1994) J Mol Biol , vol.237 , pp. 182-192
    • Persson, B.1    Argos, P.2
  • 41
    • 0026503030 scopus 로고
    • Appearance of water channels in Xenopus oocytes expressing red cell CHIP28 water channel
    • Preston GM, Carrol TP, Guggino WB, Agre P. 1992. Appearance of water channels in Xenopus oocytes expressing red cell CHIP28 water channel. Sciences 256:385-387.
    • (1992) Sciences , vol.256 , pp. 385-387
    • Preston, G.M.1    Carrol, T.P.2    Guggino, W.B.3    Agre, P.4
  • 43
    • 0023059178 scopus 로고
    • A conformational preference parameter to predict helices in integral membrane proteins
    • Rao JKM, Argos P. 1986. A conformational preference parameter to predict helices in integral membrane proteins. Biochim Biophys Acta 869:197-214.
    • (1986) Biochim Biophys Acta , vol.869 , pp. 197-214
    • Rao, J.K.M.1    Argos, P.2
  • 44
    • 0027233420 scopus 로고
    • The MIP family of integral membrane channel proteins: Sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins
    • Reizer J, Reizer A, Saier MH Jr. 1993. The MIP family of integral membrane channel proteins: Sequence comparisons, evolutionary relationships, reconstructed pathway of evolution, and proposed functional differentiation of the two repeated halves of the proteins. Crit Rev Biochem Mol 28:235-257.
    • (1993) Crit Rev Biochem Mol , vol.28 , pp. 235-257
    • Reizer, J.1    Reizer, A.2    Saier Jr., M.H.3
  • 45
    • 0015428973 scopus 로고
    • Importance of facilitated diffusion for effective utilization of glycerol by Escherichia coli
    • Richey DP, Lin ECC. 1972. Importance of facilitated diffusion for effective utilization of glycerol by Escherichia coli. J Bacteriol 112:784-790.
    • (1972) J Bacteriol , vol.112 , pp. 784-790
    • Richey, D.P.1    Lin, E.C.C.2
  • 46
    • 0030985888 scopus 로고    scopus 로고
    • Functional analysis of nodulin 26, an aquaporin in soybean root nodule symbiosomes
    • Rivers RL, Dean RM, Chandy G, Hall JE, Roberts DM, Zeidel ML. 1997. Functional analysis of nodulin 26, an aquaporin in soybean root nodule symbiosomes. J Biol Chem 272:16256-16261.
    • (1997) J Biol Chem , vol.272 , pp. 16256-16261
    • Rivers, R.L.1    Dean, R.M.2    Chandy, G.3    Hall, J.E.4    Roberts, D.M.5    Zeidel, M.L.6
  • 47
    • 0028100825 scopus 로고
    • Water transport in renal tubules is mediated by aquaporins
    • Sabolic I, Brown D. 1994. Water transport in renal tubules is mediated by aquaporins. Clin Investig 72:698-700.
    • (1994) Clin Investig , vol.72 , pp. 698-700
    • Sabolic, I.1    Brown, D.2
  • 48
    • 0028345374 scopus 로고
    • Computer-aided analysis of transport protein sequences: Gleaning evidence concerning function, structure, biogenesis and evolution
    • Saier MH Jr. 1994. Computer-aided analysis of transport protein sequences: Gleaning evidence concerning function, structure, biogenesis and evolution. Microbio Rev 58:71-93.
    • (1994) Microbio Rev , vol.58 , pp. 71-93
    • Saier Jr., M.H.1
  • 49
    • 0030953720 scopus 로고    scopus 로고
    • Antimonite is accumulated by the glycerol facilitator GlpF in Escherichia coli
    • Sanders OI, Rensing S, Kuroda M, Mitra B, Rosen BP. 1997. Antimonite is accumulated by the glycerol facilitator GlpF in Escherichia coli. J Bacteriol 179:3365-3367.
    • (1997) J Bacteriol , vol.179 , pp. 3365-3367
    • Sanders, O.I.1    Rensing, S.2    Kuroda, M.3    Mitra, B.4    Rosen, B.P.5
  • 50
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 51
    • 0028241380 scopus 로고
    • Nodulin 26, a nodule-specific symbiosome membrane protein from soybean, is an ion channel
    • Weaver CD, Shomer NH, Louis CF, Roberts DM. 1994. Nodulin 26, a nodule-specific symbiosome membrane protein from soybean, is an ion channel. J Biol Chem 269:17858-17862.
    • (1994) J Biol Chem , vol.269 , pp. 17858-17862
    • Weaver, C.D.1    Shomer, N.H.2    Louis, C.F.3    Roberts, D.M.4
  • 52
    • 0031200862 scopus 로고    scopus 로고
    • The major intrinsic protein family of Arabidopsis has 23 members that form three distinct groups with functional aquaporins in each group
    • Weig A, Deswarte C, Chrispeels MJ. 1997. The major intrinsic protein family of Arabidopsis has 23 members that form three distinct groups with functional aquaporins in each group. Plant Physiol 114:1347-1357.
    • (1997) Plant Physiol , vol.114 , pp. 1347-1357
    • Weig, A.1    Deswarte, C.2    Chrispeels, M.J.3
  • 53
    • 0025853910 scopus 로고
    • Tandem sequence repeats in transmembrane channel proteins
    • Wistow G, Pisano MM, Chepelinsky AB. 1991. Tandem sequence repeats in transmembrane channel proteins. Trends Biochem Sci 16:170-171.
    • (1991) Trends Biochem Sci , vol.16 , pp. 170-171
    • Wistow, G.1    Pisano, M.M.2    Chepelinsky, A.B.3
  • 54
    • 0030922070 scopus 로고    scopus 로고
    • Water and glycerol permeabilities of aquaporins 1-5 and MIP determined quantitatively by expression of epitope-tagged constructs in Xenopus oocytes
    • Yang B, Verkman AS. 1997. Water and glycerol permeabilities of aquaporins 1-5 and MIP determined quantitatively by expression of epitope-tagged constructs in Xenopus oocytes. J Biol Chem 272:16140-16146.
    • (1997) J Biol Chem , vol.272 , pp. 16140-16146
    • Yang, B.1    Verkman, A.S.2


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