Comparison of ribotyping and arbitrarily primed PCR for molecular typing of Salmonella enterica and relationships between strains on the basis of these molecular markers

Journal of Applied Microbiology

Volumn 85, Issue 6, 1998, Pages 933-940

  Hilton, A C ^a   Penn, C W ^a  

^a UNIVERSITY OF BIRMINGHAM   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

NUMERICAL METHODS; POPULATION STATISTICS;

ABSOLUTE CORRELATIONS; MOLECULAR MARKER; MOLECULAR TYPING; NUMERICAL INDEX; PHYLOGENETIC TREES; POPULATION STRUCTURES; RIBOTYPING; SALMONELLA ENTERICA; SEROVARS; SIMPSON;

SALMONELLA;

ARTICLE; AUTOMATION; BACTERIUM IDENTIFICATION; BACTERIUM ISOLATE; BIODIVERSITY; INTERMETHOD COMPARISON; NONHUMAN; PHYLOGENY; POLYMERASE CHAIN REACTION; RIBOTYPING; SALMONELLA ENTERICA; SALMONELLA ENTERITIDIS; SALMONELLA TYPHIMURIUM; STRAIN DIFFERENCE;

BACTERIA (MICROORGANISMS); ENTERITIDIS; NEGIBACTERIA; SALMONELLA; SALMONELLA ENTERICA; SALMONELLA ENTERITIDIS; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0031774546     PISSN: 13645072     EISSN: None     Source Type: Journal    
DOI: 10.1111/j.1365-2672.1998.tb05256.x     Document Type: Article

References (26)

1. Anon. (1997) Communicable Disease Surveillance Centre, Salmonella data set. Communicable Disease Report Weekly 7, 444.
2. Beltran, P., Musser, J.M., Helmuth, R. et al. (1988) Toward a population genetic analysis of Salmonella: genetic diversity and relatedness among strains of serotypes of S. choleraesuis, S. derby, S. dublin, S. enteritidis, S. heidelberg, S. infantis, S. newport and S. typhimurium. Proceedings of the National Academy of Sciences of the USA 85, 7753-7757.
3. Bruce, J.L., Hubner, R.J., Cole, E.M., McDowell, C.I. and Webster, J.A. (1995) Sets of EcoRI fragments containing rRNA sequences are conserved among different strains of Listeria monocytogenes. Proceedings of the National Academy of Sciences of the USA 11, 5229-5233.
4. Caugant, D.A., Frøholm, L.O. and Bøvre, K. (1986) Intercontinental spread of a genetically distinctive complex of clones of Neisseria maningitidis causing epidemic diseases. Proceedings of the National Academy of Sciences of the USA 83, 4927-4931.
5. Caugant, D.A., Levin, B.R., Ørskov, I., Ørskov, F., Eden, C.S. and Selander, R.K. (1985) Genetic diversity in relation to serotype in Escherichia coli. Infection and Immunity 49, 407-413.
6. Esteban, E., Snipes, K., Hird, D., Kasten, R. and Kinde, H. (1993) Use of ribotyping for characterization of Salmonella serotypes. Journal of Clinical Microbiology 31, 233-237.
7. Gonzalez-Hevia, M.A., Laneze, J.J. and Mendoza, M.C. (1994) Usefulness of molecular genetic markers in the typing of Salmonella enterica serovar Enteritidis causing a food-borne outbreak. International Journal of Food Microbiology 22, 97-103.
8. Grimont, F. and Grimont, P.A.D. (1986) Ribosomal ribonucleic acid gene restriction patterns as potential taxonomic tools. Annals of Microbiology (Institut Pasteur) 137, 165-175.
9. Hilton, A.C., Banks, J.G. and Penn, C.W. (1996) Random amplification of polymorphic DNA (RAPD) of Salmonella: strain differentiation and characterisiation of amplified sequences. Journal of Applied Bacteriology 81, 575-584.
10. Hunter, P.R. and Gaston, M.A. (1988) Numerical index of the discriminatory ability of typing systems: an application of Simpson's index of diversity. Journal of Clinical Microbiology 26, 2465-2466.
11. Kobos, R.K., Blue, B.A., Robertson, C.W. and Keilhorn, L.A. (1995) Enhancement of enzyme-activated 1,2 dioxyetane chemiluminescence in membrane-based assays. Analytical Biochemistry 224, 128-133.
12. Lin, A.W., Usera, M.A., Barrett, T.J. and Goldsby, R.A. (1996) Application of random amplified polymorphic DNA analysis to differentiate strains of Salmonella enteritidis. Journal of Clinical Microbiology 34, 870-876.
13. Lynch, M. and Milligan, B.G. (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology 3, 91-99.
14. On, S.L.G. and Baggesen, D.L. (1997) Determination of clonal relationships of Salmonella typhimurium by numerical analysis of macrorestriction profiles. Journal of Applied Microbiology 83, 699-706.
15. Ørskov, F. and Ørskov, I. (1983) Summary of a workshop on the clone concept in the epidemiology, taxonomy and evolution of the Enterobacteriaceae and other bacteria. Journal of Infectious Diseases 148, 346-357.
16. Reeves, M.W., Evins, G.M., Heiba, A.A., Plikaytis, B.D. and Farmer III, J.J. (1989) Clonal nature of Salmonella typhi and its genetic relatedness to other salmonellae as shown by multilocus enzyme electrophoresis, and proposal of Salmonella bongori comb. nov. Journal of Clinical Microbiology 27, 313-320.
17. Sambrook, J., Fritsch, E.F. and Maniatis, T. (1989) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, NY: Cold Spring Laboratory Press.
18. Sanderson, K.E. and Hurley, J.A. (1987) Linkage map of Salmonella typhimurium. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Vol. 2. pp. 877-918. Washington: American Society for Microbiology.
19. Selander, R.K., Caugant, D.A. and Whittam, T.S. (1987) Genetic structure and variation in natural populations of Escherichia coli and Salmonella typhimurium. In Escherichia coli and Salmonella typhimurium: Cellular and Molecular Biology, Vol. 2. ed. Neidhardt, F.C. pp. 1625-1648. Washington: American Society for Microbiology.
20. Selander, R.K. and Smith, N.H. (1990) Molecular population genetics of Salmonella. Review of Medical Microbiology 1, 219-228.
21. Wachsmuth, I.K., Kiehlbauch, J.A., Bopp, C.A. et al. (1991) The use of plasmid profiles and nucleic acid probes in epidemiologic investigations of foodborne diarrhoeal diseases. International Journal of Food Microbiology 12, 77-90.
22. Webster, J.A., Bannaman, T.C., Hubner, R.J. et al. (1994) The Staphylococcus sciuri species group described by EcoRI fragments containing rRNA sequences with recognition of S. vitulus sp. November. International Journal of Systematic Bacteriology 44, 454-460.
23. Welsh, J. and McClelland, M. (1990) Fingerprinting genomes using PCR with arbitrary primers. Nucleic Acids Research 18, 7213-7217.
24. Whittam, T.S. (1995) Genetic population structure and pathogenicity in enteric bacteria. Symposium of the Society for General Microbiology 52, 217-245.
25. Williams, J.G.K., Kubelik, A.R., Livak, K.J., Rafalski, J.A. and Tingey, S.V. (1990) DNA polymorphisms amplified by arbitrary primers are useful as genetic markers. Nucleic Acids Research 18, 6531-6535.
26. Woese, C.R. (1987) Bacterial evolution. Microbiological Reviews 51, 221-271.