Two mutant forms of the S1/TPR-containing protein Rrp5p affect the 18S rRNA synthesis in Saccharomyces cerevisiae

RNA

Volumn 4, Issue 12, 1998, Pages 1636-1652

  Torchet, Claire ^a   Jacq, Claude ^a   Hermann Le Denmat, Sylvie ^a  

^a ECOLE NORMALE SUPÉRIEURE   (France)

Author keywords

Ribosomal protein S1; Ribosome; RNA helicase; RRNA processing; Yeast

Indexed keywords

RIBOSOME PROTEIN; RNA HELICASE;

ALLELE; ARTICLE; GENE DELETION; GENE MUTATION; MESSENGER RNA SYNTHESIS; NONHUMAN; PRIORITY JOURNAL; PROTEIN ASSEMBLY; RNA BINDING; RNA PROCESSING; SACCHAROMYCES CEREVISIAE; TANDEM REPEAT; TRANSCRIPTION REGULATION; YEAST;

ALLELES; AMINO ACID SEQUENCE; BASE SEQUENCE; DNA PRIMERS; FUNGAL PROTEINS; MITOCHONDRIA; MOLECULAR SEQUENCE DATA; NUCLEAR PROTEINS; RNA PRECURSORS; RNA PROCESSING, POST-TRANSCRIPTIONAL; RNA, RIBOSOMAL, 18S; SACCHAROMYCES CEREVISIAE; SACCHAROMYCES CEREVISIAE PROTEINS; SEQUENCE HOMOLOGY, AMINO ACID;

EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0031761922     PISSN: 13558382     EISSN: None     Source Type: Journal    
DOI: 10.1017/S1355838298981511     Document Type: Article

References (59)

1. 3 is linked. RNA 2:63-73.
2. Banroques J, Delahodde A, Jacq C. 1986. A mitochondrial RNA maturase gene transferred to the yeast nucleus can control mitochondrial mRNA splicing. Cell 46:837-844.
3. Baudin A, Ozier-Kalogeropoulos O, Denouel A, Lacroute F, Cullin C. 1993. A simple and efficient method for direct gene deletion in Saccharomyces cerevisiae. Nucleic Acids Res 21:3329-3330.
4. Boeke JD, Lacroute F, Fink GR. 1984. A positive selection for mutants lacking orotidine-5′-phosphate decarboxylase activity in yeast: 5-fluoro-orotic acid resistance. Mol Gen Genet 197:345-346.
5. Boni IV, Isaeva DM, Musychenko ML, Tzareva NV. 1991. Ribosome-messenger recognition: mRNA target sites for ribosomal protein S1. Nucleic Acids Res 19:155-162.
6. Bonneaud N, Ozier-Kalogeropoulos O, Li G, Labouesse M, Minvielle-Sebastia L, Lacroute F. 1991. A family of low and high copy replicative, integrative and single-stranded S. cerevisiae/E. coli shuttle vectors. Yeast 7:609-615.
7. Bossie MA, DeHoratius C, Barcelo G, Silver P. 1992. A mutant nuclear protein with similarity to RNA binding proteins interferes with nuclear import in yeast. Mol Biol Cell 3:875-893.
8. Bycroft M, Hubbard TJP, Proctor M, Freund SVM, Murzin AG. 1997. The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold. Cell 88:235-242.
9. Chardin P, Camonis JH, Gale NW, Van Aelst L, Schlessinger J, Wigler M, Bar-Sagi D. 1993. Human Sos1: A guanine nucleotide exchange factor for ras binds to Grb2. Science 260:1338-1343.
10. Claros MG, Perea J, Jacq C. 1996. Allotopic expression of yeast mitochondrial maturase to study mitochondrial import of hydrophobic proteins. Methods Enzymol 264:389-403.
11. Claros MG, Perea J, Shu Y, Samatey FA, Popot JL, Jacq C. 1995. Limitations to in vivo import of hydrophobic proteins into yeast mitochondria. The case of a cytoplasmically synthesized apocytochrome b. Eur J Biochem 228:762-771.
12. Company W, Arenas J, Abelson J. 1991. Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. Nature 349:487-493.
13. Cormack RS, Genereaux JL, Mackie GA. 1993. RNase E activity is conferred by a single polypeptide: Overexpression, purification, and properties of the ams/rne/hmp1 gene product. Proc Natl Acad Sci USA 90:9006-9010.
14. Das AK, Cohen PTW, Barford D. 1998. The structure of the tetratricopeptide repeats of protein phosphatase 5: Implications for TPR-mediated protein-protein interactions. EMBO J 17:1192-1199.
15. Della Seta F, Treich I, Buhler JM, Sentenac A. 1990. ABF1 binding sites in yeast RNA polymerase genes. J Biol Chem 265:15168-15175.
16. Dujardin G, Labouesse M, Netter P, Slonimski PP. 1983. Genetic and biochemical studies of the nuclear suppressor NAM2: Extraneous activation of the latent pleiotropic maturase. In: Schweyen RJ, Wolf K, Kaudewitz F, eds. Mitochondria. Berlin: Walter de Gruyter. pp 233-250.
17. Eichler DC, Craig N. 1994. Processing of eukaryotic ribosomal RNA. Prog Nucleic Acid Res Mol Biol 49:197-239.
18. Eklund EA, Lee SW, Skalnik DG. 1995. Cloning of a cDNA encoding a human DNA-binding protein similar to ribosomal protein S1. Gene 155:231-235.
19. Ellis EM, Reid GA. 1993. The Saccharomyces cerevisiae MTS1 gene encodes a putative RNA-binding protein involved in mitochondrial protein targeting. Gene 132:175-183.
20. Fuller-Pace FV. 1994. RNA helicases: Modulators of RNA structure. Trends Cell Biol 4:271-274.
21. Garrett JM, Singh KK, von der Haar RA, Emr SD. 1991. Mitochondrial protein import: Isolation and characterization of the Saccharomyces cerevisiae MFT1 gene. Mol Gen Genet 225:483-489.
22. Henry Y, Wood H, Morrissey JP, Petfalski E, Kearsey S, Tollervey D. 1994. The 5′ end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site. EMBO J 13:2452-2463.
23. Herrin DL, Schmidt GW. 1988. Rapid, reversible staining of Northern blots prior to hybridization. Biotechniques 6:196-197.
24. Hoffman CS, Winston F. 1987. A ten-minute DNA preparation from yeast efficiently releases autonomous plasmids for transformation of Escherichia coli. Gene 57:267-272.
25. Hughes JMX, Ares M Jr. 1991. Depletion of U3 small nucleolar RNA inhibits cleavage in the 5′ external transcribed spacer of yeast pre-ribosomal RNA and impairs formation of 18S ribosomal RNA. EMBO J 10:4231-4239.
26. Kiss-Laszlo Z, Henry Y, Bachellerie JP, Caizergues-Ferrer M, Kiss T. 1996. Site-specific ribose methylation of preribosomal RNA: A novel function for small nucleolar RNAs. Cell 85:1077-1088.
27. Kressler D, de la Cruz J, Rojo M, Linder P. 1997. Fal1p is an essential DEAD-box protein involved in 40S-ribosomal-subunit biogenesis in Saccharomyces cerevisiae. Mol Cell Biol 17:7283-7294.
28. Labouesse M, Dujardin G, Slonimski PP. 1985. The yeast nuclear gene NAM2 is essential for mitochondrial DNA integrity and can cure a mitochondrial RNA-maturase deficiency. Cell 41:133-143.
29. Labouesse M, Slonimski PP. 1983. Construction of novel cytochrome b genes in yeast mitochondria by subtraction or addition of introns. EMBO J 2:269-276.
30. Lamb JR, Tugendreich S, Hieter P. 1995. Tetratrico peptide repeat interactions: To TPR or not to TPR? Trends Biochem Sci 20:257-259.
31. Li HV, Zagorski J, Fournier MJ. 1990. Depletion of U14 small nuclear RNA (snR128) disrupts production of 18S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 10:1145-1152.
32. Liang WQ, Clark JA, Fournier MJ. 1997. The rRNA-processing function of the yeast U14 small nucleolar RNA can be rescued by a conserved RNA helicase-like protein. Mol Cell Biol 17:4124-4132.
33. Lithgow T, Cuezva JM, Silver PA. 1997. Highways for protein delivery to the mitochondria. Trends Biochem Sci 22:110-113.
34. Mann C, Buhler JM, Treich I, Sentenac A. 1987. RPC40, a unique gene for a subunit shared between yeast RNA polymerases A and C. Cell 48:627-637.
35. Maxwell ES, Fournier MJ. 1995. The small nucleolar RNAs. Annu Rev Biochem 35:897-934.
36. Mélèse T, Xue Z. 1995. The nucleolus: An organelle formed by the act of building a ribosome. Curr Opin Cell Biol 7:319-324.
37. Morrissey JP, Tollervey D. 1993. Yeast snR30 is a small nucleolar RNA required for 18S rRNA synthesis. Mol Cell Biol 13:2469-2477.
38. Morrissey JP, Tollervey D. 1995. Birth of the snoRNPs: The evolution of RNase MRP and the eukaryotic pre-rRNA-processing system. Trends Biochem Sci 20:78-82.
39. O'Day CL, Chavanikamannil F, Abelson J. 1996. 18S rRNA processing requires the RNA helicase-like protein Rrp3. Nucleic Acids Res 16:3201-3207.
40. Pearson WR, Lipman DJ. 1988. Improved tools for biological sequence comparison. Proc Natl Acad Sci USA 85:2444-2448.
41. Rosenkrantz M, Kell CS, Pennell EA, Devenish LJ. 1994. The HAP2,3,4 transcriptional activator is required for derepression of the yeast citrate synthase gene, CIT1. Mol Microbiol 13:119-131.
42. Sambrook J, Fritsch EF, Maniatis T. 1989. Molecular cloning: A laboratory manual. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
43. Schmitt ME, Brown TA, Trumpower BL. 1990. A rapid and simple method for preparation of RNA from Saccharomyces cerevisiae. Nucleic Acids Res 18:3091-3092.
44. Schmitt ME, Clayton DA. 1993. Nuclear RNase MRP is required for correct processing of pre-5.8S rRNA in Saccharomyces cerevisiae. Mol Cell Biol 13:7935-7941.
45. Schnier J, Kimura M, Foulaki K, Subramanian AR, Isono K, Wittman-Liebold B. 1982. Primary structure of Escherichia coli ribosomal protein S1 and of its gene rpsA. Proc Natl Acad Sci USA 79:1008-1011.
46. Sherman F. 1991. Getting started with yeast. Methods Enzymol 194: 3-20.
47. Sikorski RS, Boguski MS, Goebl M, Hieter P. 1990. A repeating amino acid motif in CDC23 defines a family of proteins and a new relationship among genes required for mitosis and RNA synthesis. Cell 60:307-317.
48. Smith CM, Steitz JA. 1997. Sno storm in the nucleolus: New roles for myriad small RNPs. Cell 89:669-672.
49. Song Y, Kim S, Kim J. 1995. ROK1, a high-copy-number plasmid suppressor of kem1, encodes a putative ATP-dependent RNA helicase in Saccharomyces cerevisiae. Gene 166:151-154.
50. Stettler S, Chiannilkulchai N, Hermann-Le Denmat S, Lalo D, Lacroute F, Thuriaux P. 1993. A general suppressor of RNA polymerase I, II, and III mutations in Saccharomyces cerevisiae. Mol Gen Genet 239:169-176.
51. Subramanian AR. 1983. Structure and functions of ribosomal protein S1. Prog Nucleic Acid Res Mol Biol 28:101-142.
52. Tollervey D. 1987. A yeast small nuclear RNA is required for normal processing of pre-ribosomal RNA. EMBO J 6:4169-4175.
53. Tollervey D, Kiss T. 1997. Function and synthesis of small nucleolar RNAs. Curr Opin Cell Biol 9:337-342.
54. Venema J, Bousquet-Antonelli C, Gelugne JP, Caizergues-Ferrer M, Tollervey D. 1997. Rok1p is a putative RNA helicase required for rRNA processing. Mol Cell Biol 17: 3398-3407.
55. Venema J, Tollervey D. 1995. Processing of pre-ribosomal RNA in Saccharomyces cerevisiae. Yeast 11:1629-1650.
56. Venema J, Tollervey D. 1996. RRP5 is required for formation of both 18S and 5.8S rRNA in yeast. EMBO J 15:5701-5714.
57. Voorma HO. 1996. Control of translation initiation in Prokaryotes: Translational control. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press. pp 759-777.
58. Zhang K, Smouse D, Perrimon N. 1991. The crooked neck gene of Drosophila contains a motif found in a family of yeast cell cycle genes. Genes & Dev 5:1080-1091.
59. Zoladek T, Vaduva G, Hunter LA, Boguta M, Go BD, Martin NC, Hopper AK. 1995. Mutations altering the mitochondrial-cytoplasmic distribution of Mod5p implicate the actin cytoskeleton and mRNA 3′ ends and/or protein synthesis in mitochondrial delivery. Mol Cell Biol 15:6884-6894.