Comparison of experimental to meltsim calculated dna melting of the (a+t) rich dictyostelium discoideum genome: Denaturation maps distinguish exons from introns

Journal of Biomolecular Structure and Dynamics

Volumn 16, Issue 2, 1998, Pages 329-339

  Marx, Kenneth A ^a   Assil, Iman Q ^a   Bizzaro, J W ^a   Blake, R D ^b  

^a University of Massachusetts Lowell   (United States)

^b UNIVERSITY OF MAINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; DICTYOSTELIUM DISCOIDEUM; DNA DEGRADATION; DNA FLANKING REGION; DNA SEQUENCE; EXON; GENE MAPPING; GENE SEQUENCE; INTRON; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; SEQUENCE ANALYSIS;

ANIMALS; CHEMICAL FRACTIONATION; DICTYOSTELIUM; DNA, PROTOZOAN; EXONS; GENOME, PROTOZOAN; INTRONS; MATHEMATICAL COMPUTING; NUCLEIC ACID DENATURATION;

DICTYOSTELIUM DISCOIDEUM; EUKARYOTA; FUNGI; MYXOGASTRIA;

EID: 0031759433     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1998.10508250     Document Type: Article

References (25)

1. Marx, K. A., Bizzaro, J. W., Assil, I., and Blake, R. D., 1997. “ in “Statistical Mechanics in Physics and Biology”. In Proceedings, Materials Research Society 463–152. PA.:Pittsburgh. 147
2. Delcourt, S. G., and Blake, R. D., 1991. J Biol. Chem., 266:15160–15169.
3. Blake, R. D., 1996. in “Encyclopedia of Molecular Biology and Molecular Medicine” Edited by:Myers, R. A., Vol. 2, 1–18. Basel:VCH Publ.
4. Marx, K. A., Hess, S. T., and Blake, R. D., 1993. J. Biomol. Str. & Dyn., 11:57–66.
5. Kunkel, T. A., and Bebanek, K., 1988. Biochim. Biophys. Acta., 951:1–15.
6. Marx, K. A., Hess, S. T., and Blake, R. D., 1994. J. Biomol. Str. & Dyn., 12:235–246.
7. Poland, D., and Scheraga, H. A., 1970. Theory of Helix-Coil Transitions in Biopolymers. Academic Press, New York
8. Poland, D., 1974. Biopolymers, 13:1859–1871.
9. Fixman, M., and Friere, J., 1977. Biopolymers, 16:2693–2704.
10. Firtel, R., Cockburn, A., Frankel, G., and Hershfeld, V., 1976. J. Mol. Biol., 102:831–852.
11. Blake, R. D., and Hydorn, T. G., 1985. J. Biochem. Biophys. Methods., 11:307–316.
12. Yen, S-W. W., and Blake, R. D., 1980. Biopolymers, 19:681–700.
13. Ising, E., 1925. Physik, 31:253
14. Hill, T. L., 1956. Statistical Mechanics. McGraw-Hill, New York
15. Wartell, R. M., and Benight, A. S., 1985. Physics Rep., 126:67–107.
16. Blake, R. D., Bizzaro, J. W., Blake, J. D., Day, G. R., Delcourt, S. G., Knowles, J., SantaLucia, J., and Marx, K. A., Bioinformatics submitted
17. Winter, E., and Varshavsky, A., 1989. EMBO Journal, 8:1867–1877.
18. Iyer, V., and Struhl, K., 1995. EMBO Journal, 14:2570–2579.
19. Garreau, H., and Williams, J. G., 1983. Nucleic Acids Research, 11:8473–8484.
20. Freeman, J., and Marx, K. A., unpublished results
21. Fickett, J. W., and Tung, C. S., 1992. Nuc. Acids Res., 20:6441–6450.
22. Grosse, I., Herzel, H., Buldyrev, S. V., and Stanley, H. E., Science manuscript submitted
23. Troll, H., Winckler, T., Lascu, I., Muller, N., Saurin, W., Veron, M., and Mutzel, R., 1993. J. Biol. Chem., 268:25469–25475.
24. Bizzaro, J. W., Marx, K. A., and Blake, R. D., 1998. “Materials Science of the Cell”. In Proceedings, Materials Research Society Inc., Pittsburgh, PA., 489 in, in press
25. Hanai, R., Suyama, A., and Wada, A., 1988. FEBS Letters, 226:247–249.