Regulation of mammalian replication origin usage in Xenopus egg extract

Journal of Cell Science

Volumn 111, Issue 19, 1998, Pages 2989-2998

  Dimitrova, Daniela S ^a   Gilbert, David M ^a  

^a SUNY UPSTATE MEDICAL UNIVERSITY   (United States)

Author keywords

Cell cycle; DNA replication; Mid blastula transition; Origin decision point; Xenopus egg extract

Indexed keywords

DIHYDROFOLATE REDUCTASE;

ANIMAL CELL; ARTICLE; CELL CYCLE G1 PHASE; CHO CELL; DNA REPLICATION ORIGIN; DNA SYNTHESIS INHIBITION; FEMALE; NONHUMAN; PRIORITY JOURNAL; REPLICON; XENOPUS;

ANIMALS; CELL NUCLEUS; CHO CELLS; CRICETINAE; CYTOSOL; DNA; DNA REPLICATION; FEMALE; G1 PHASE; NUCLEAR ENVELOPE; OVUM; REPLICATION ORIGIN; TETRAHYDROFOLATE DEHYDROGENASE; XENOPUS;

ANIMALIA; CRICETINAE; CRICETULUS GRISEUS; MAMMALIA;

EID: 0031730896     PISSN: 00219533     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (48)

1. Benavente, R., Krohne, G. and Franke, W. W. (1985). Cell type-specific expression of nuclear lamina proteins during development of Xenopus laevis. Cell 41, 177-190.
2. Bielinsky, A.-K. and Gerbi, S. (1998). Discrete start sites for DNA synthesis in the yeast ARS1 origin. Science 279, 95-98.
3. Blumenthal, A. B., Kriegstein, H. J. and Hogness, D. S. (1974). The units of DNA replication in Drosophila melanogaster chromosomes. Cold Spring Harbor Symp. Quant. Biol. 38, 205-223.
4. Brown, E. H., Iqbal, M. A., Stuart, S., Hatton, K. S., Valinsky, J. and Schildkraut, C. L. (1987). Rate of replication of the murine immunoglobulin heavy-chain locus: evidence that the region is part of a single replicon. Mol. Cell. Biol. 1, 450-457.
5. Buongiorno, Nardelli, M., Micheli, G., Carri, M. T. and Marilley, M. (1982). A relationship between replicon size and supercoiled loop domains in the eukaryotic genome. Nature 298, 100-102.
6. Chong, J., Thommes, P., Rowles, A., Mahbubani, H. and Blow, J. (1997). Characterisation of the Xenopus replication licensing system. Meth. Enzymol. 283, 549-564.
7. Coverley, D. and Laskey, R. A. (1994). Regulation of eukaryotic DNA replication. Annu. Rev. Biochem. 63, 745-776.
8. Diffley, J. F. X. (1996). Once and only once upon a time: specifying and regulating origins of DNA replication in eukaryotic cells. Genes Dev. 10, 2819-2830.
9. Dimitrov, S., Almouzni, G., Dasso, M. and Wolffe, A. P. (1993). Chromatin transitions during early Xenopus embryogenesis: changes in histone H4 acetylation and in linker histone type. Dev. Biol. 160, 214-27.
10. Dimitrov, S. and Wolffe, A. P. (1996). Remodeling somatic nuclei in Xenopus laevis egg extracts: molecular mechanisms for the selective release of hislones H1 and H1 from chromatin and the acquisition of transcriptional competence. EMBO J. 15, 5897-5906.
11. Dutta, A. and Bell, S. (1997). Initiation of DNA replication in eukaryotic cells. Annu. Rev. Cell Dev. Biol. 13, 293-332.
12. Epner, E., Forrester, W. C. and Groudine, M. (1988). Asynchronous DNA replication within the human beta-globin gene locus. Proc. Nat. Acad. Sci. USA 85, 8081-8085.
13. Gerber, J.-K., Gogel, E., Berger, C., Wallisch, M., Muller, F., Grummt, I. and Grummt, F. (1997). Termination of mammalian rDNA replication: polar arrest of replication fork movement by tanscription termination factor TTF-I. Cell 90, 559-567.
14. Gilbert, D. M., Miyazawa, H. and DePamphilis, M. L. (1995). Site-specific initiation of DNA replication in Xenopus egg extract requires nuclear structure. Mol. Cell Biol. 15, 2942-2954.
15. Gilbert, D. M. (1998). Replication origins in yeast vs metazoa: separation of the haves and the have nots. Curr. Opin. Gen. Dev. 8, 194-199.
16. Hamlin, J. L., Mosca, P. J. and Levenson, V. V. (1994). Defining origins of replication in mammalian cells. Biochim. Biophys. Acta 1198, 85-111.
17. Hyrien, O. and Mechali, M. (1993). Chromosomal replication initiates and terminates at random sequences but at regular intervals in the ribosomal DNA of Xenopus early embryos. EMBO J. 12, 4511-4520.
18. Hyrien, O., Marie, C. and Mechali, M. (1995). Transition in specification of embryonic melazoan DNA replication origins. Science 270, 994-997.
19. Kill, I. R., Bridger, J. M., Campbell, K. H., Maldonado, C. G. and HuU bison, C. J. (1991). The timing of the formation and usage of replicase clusters in S-phase nuclei of human Jiploid fibroblasts. J. Cell Sci. 100, 869-876.
20. Kimelman, D., Kirschner, M. and Scherson, T. (1987). The events of the midblastula transition in Xenopus are regulated by changes in the cell cycle. Cell 48, 399-407.
21. Kitsberg, D., Selig, S., Brandeis, M., Simon, I., Keshet, I., Driscoll, D., Nicholls, R. and Cedar, H. (1993). Allele-specific replication timing of imprinted gene regions. Nature 364, 459-463.
22. Kobayashi, T., Rein, T. and DePamphilis, M. (1998). Identification of primary initiation sites for DNA replication in the hamster DHFR gene initiation zone. Mol. Cell. Biol. 18, 3266-3277.
23. Lawlis, S. J., Keezer, S. M., Wu, J.-R. and Gilbert, D. M. (1996). Chromosome architecture can dictate site-specific initiation of DNA replication in Xenopus egg extracts. J. Cell Biol. 135, 1-12.
24. Leibovichi, M., Nonod, G., Géraudie, J., Bravo, R. and Méchali, M. (1992). Nuclear distribution of PCNA during embryonic development in Xenopus laevis: a reinvestigation of early cell cycles. J. Cell Sci. 102, 63-69.
25. 2 nuclei but not GI nuclei in Xenopus egg extract. Cell 69, 151-158.
26. Lu, Z. H., Sittman, D., Romanowski, P. and Leno, G. (1998). Histone H1 reduces the frequency of initiation in Xenopus egg extract by Imiting the assembly of prereplication complexes on sperm chromatin. Mol. Biol. Cell 9, 1163-1176.
27. Mahbubani, H. M., Paull, T., Elder, J. K. and Blow, J. J. (1992). DNA replication initiates at multiple sites on plasmid DNA in Xenopus egg extracts. Nucl. Acids Res. 20, 1457-1462.
28. Marshall, W., Fung, J. and Sedat, J. (1997). Deconstructing the nucleus: global architecture from local interactions. Cun: Opin. Gen. Dev. 7, 259-263.
29. Micheli, G., Luzzatto, A. R., Carri, M. T., deCapoa, A. and Pelliccia, F. (1993). Chromosome length and DNA loop size during early embryonic development of Xenopus laevis. Chromosoma 102, 478-483.
30. Montag, M., Spring, H. and Trendelenburg, M. F. (1988). Structural analysis of the mitotic cycle in pre-gastrula Xenopus embryos. Chromosoma 96, 187-196.
31. Newport, J. and Kirschner, M. (1982a). A major developmental transition in early Xenopus embryos: I. characterization and timing of cellular changes at the midblastula stage. Cell 30, 675-686.
32. Newport, J. and Kirschner, M. (1982b). A major developmental transition in early Xenopus embryos: II. Control of the onset of transcription. Cell 30, 687-696.
33. O'Keefe, R. T., Henderson, S. C. and Spector, D. L. (1992). Dynamic organization of DNA replication in mammalian cell nuclei - spatially and temporally defined replication of chromosome-specific alpha-satellite DNA sequences. J. Cell Biol, 116, 1095-1110.
34. Rowles, A., Chong, J., Brown, L., Howell, M., Evan, G. and Blow, J. (1996). Interaction between the origin recognition complex and the replication licensing system in Xenopus. Cell 87, 287-296.
35. Sambrook, J., Fritsch, E. F. and Maniatis, T. (1989). Molecular Cloning. A Laboratory Manual, II edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
36. Selig, S., Okumura, K., Ward, D. C. and Cedar, H. (1992). Delineation of DNA replication lime zones by fluorescence in situ hybridization. EMBO J. 11, 1217-1225.
37. Sleeman, A. M., Leno, G. H., Mills, A. D., Fairman, M. P. and Laskey, R. A. (1992). Patterns of DNA replication in Drosophila polytene nuclei replicating in Xenopus egg and oocyte extracts. J. Cell Sci. 101, 509-515.
38. Stick, R. and Hausen, P. (1985). Changes in the nuclear lamina composition during early development of Xenopus laevis. Cell 41, 191-200.
39. Stillman, B. (1996). Cell cycle control of DNA replication. Science 274, 1659-1664.
40. Strehl, S., LaSalle, J. and Lalande, M. (1997). High-resolution analysis of DNA replication domain organization across an R/G-band Boundary. Mol. Cell. Biol. 17, 6157-6166.
41. Taljanidisz, J., Popowski, J. and Sarkar, N. (1989). Temporal order of gene replication in Chinese hamster ovary cells. Mol. Cell Biol. 9, 2881-2889.
42. Tenzen, T., Yamagata, T., Fukagawa, T., Sugaya, K., Ando, A., Inoko, H., Gojobori, T., Fujiyama, A., Okumura, K. and Ikemura, T. (1997). Precise switching of DNA replication timing in the GC content transition area in the human major histocompatibility complex. Mol. Cell. Biol. 17, 4043-4050.
43. Walter, J. and Newport, J. (1997). Regulation of replicon size in Xenopus egg extracts. Science 275, 993-995.
44. Wang, S., Dijkwel, P. and Hamlin, J. (1998). Lagging-strand, early-labelling and two-dimensional gel assays suggest multiple potential initiation sites in the Chinese hamster dihydrofolate reductase origin. Mol. Cell. Biol. 18, 39-50.
45. 1 step required to specify the Chinese hamster DHFR replication origin. Science 271, 1270-1272.
46. Wu, J.-R. and Gilbert, D. M. (1997). The replication origin decision point is a mitogen independent, 2-aminopurine sensitve, Gi-phase step that precedes restriction point control. Mol. Cell Biol. 17, 4312-4321.
47. Wu, J.-W., Yu, G. and Gilbert, D. M. (1997). Origin-specific initiation of mammalian nuclear DNA replication in a Xenopus cell-free system. Methods, A Companion Jo Methods in Enzymology 13, 313-324.
48. 1-phase arrest point required for specification of the Chinese hamster DHFR replication origin. EMBO J. 17, 1810-1818.