-
2
-
-
0029174344
-
Protein docking combining symbolic descriptions of molecular surfaces and grid-based scoring functions
-
Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds), AAAI Press, Menlo Park, CA
-
Ackermann, F., Herrmann, G., Kummert, F., Posch, S., Sagerer, G. and Schomburg, D. (1995a) Protein docking combining symbolic descriptions of molecular surfaces and grid-based scoring functions. In Rawlings, C., Clark, D., Altman, R., Hunter, L., Lengauer, T. and Wodak, S. (eds), Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology. AAAI Press, Menlo Park, CA, pp. 3-11.
-
(1995)
Proceedings of the Third International Conference on Intelligent Systems for Molecular Biology
, pp. 3-11
-
-
Ackermann, F.1
Herrmann, G.2
Kummert, F.3
Posch, S.4
Sagerer, G.5
Schomburg, D.6
-
3
-
-
0011898431
-
3D-Segmentierungstechniken und vektorwertige Bewertungsfunktionen für symbolisches Protein-Protein-Docking
-
Schomburg, D. and Lessel, U. (eds), VCH, Weinheim
-
Ackermann, F., Herrmann, G., Posch, S. and Sagerer, G. (1995b) 3D-Segmentierungstechniken und vektorwertige Bewertungsfunktionen für symbolisches Protein-Protein-Docking. In Schomburg, D. and Lessel, U. (eds), Bioinformatics: From Nucleic Acids and Proteins to Cell Metabolism. VCH, Weinheim, pp. 105-124.
-
(1995)
Bioinformatics: From Nucleic Acids and Proteins to Cell Metabolism
, pp. 105-124
-
-
Ackermann, F.1
Herrmann, G.2
Posch, S.3
Sagerer, G.4
-
4
-
-
0003561018
-
-
TR GCG53, Geometry Centre, Minneapolis
-
Barber, C.B., Dobkin, D.P. and Huhdanpaa, H. (1993) The quickhull algorithm for convex hull. TR GCG53, Geometry Centre, Minneapolis.
-
(1993)
The Quickhull Algorithm for Convex Hull
-
-
Barber, C.B.1
Dobkin, D.P.2
Huhdanpaa, H.3
-
6
-
-
0027530108
-
Protein docking algorithms: Simulating molecular recognition
-
Cherfils, J. and Janin, J. (1993) Protein docking algorithms: simulating molecular recognition. Curr. Opin. Struct. Biol., 3, 265-269.
-
(1993)
Curr. Opin. Struct. Biol.
, vol.3
, pp. 265-269
-
-
Cherfils, J.1
Janin, J.2
-
7
-
-
0026319198
-
Protein-protein-recognition analyzed by docking simulation
-
Cherfils, J., Duquerroy, S. and Janin, J. (1991) Protein-protein-recognition analyzed by docking simulation. Proteins Struct. Funct. Genet., 11, 271-280.
-
(1991)
Proteins Struct. Funct. Genet.
, vol.11
, pp. 271-280
-
-
Cherfils, J.1
Duquerroy, S.2
Janin, J.3
-
8
-
-
0022744127
-
1 subunit interface
-
1 subunit interface. Biopolymers, 25, 1229-1247.
-
(1986)
Biopolymers
, vol.25
, pp. 1229-1247
-
-
Connolly, M.L.1
-
9
-
-
0029025913
-
A geometry-based suite of molecular docking processes
-
Fischer, D., Lin, S.L., Wolfson, H. and Nussinov, R. (1995) A geometry-based suite of molecular docking processes. J. Mol. Biol., 248, 459-477.
-
(1995)
J. Mol. Biol.
, vol.248
, pp. 459-477
-
-
Fischer, D.1
Lin, S.L.2
Wolfson, H.3
Nussinov, R.4
-
10
-
-
0027057526
-
A database of protein structure families with common folding motifs
-
Holm, L., Ouzounis, C., Sander, C., Tuparev, G. and Vriend, G. (1992) A database of protein structure families with common folding motifs. Protein Sci., 1, 1691.
-
(1992)
Protein Sci.
, vol.1
, pp. 1691
-
-
Holm, L.1
Ouzounis, C.2
Sander, C.3
Tuparev, G.4
Vriend, G.5
-
11
-
-
0029019869
-
A continuum model for protein-protein interactions: Application to the docking problem
-
Jackson, R.M. and Sternberg, M.J.E. (1995) A continuum model for protein-protein interactions: Application to the docking problem. J. Mol. Biol., 250, 258-275.
-
(1995)
J. Mol. Biol.
, vol.250
, pp. 258-275
-
-
Jackson, R.M.1
Sternberg, M.J.E.2
-
12
-
-
0025123333
-
The structure of protein-protein recognition sites
-
Janin, J. and Chothia, C. (1990) The structure of protein-protein recognition sites. J. Biol. Chem., 265, 16027.
-
(1990)
J. Biol. Chem.
, vol.265
, pp. 16027
-
-
Janin, J.1
Chothia, C.2
-
13
-
-
0026310932
-
'Soft docking'; Matching of molecular surface cubes
-
Jiang, F. and Kim, S.-H. (1991) 'Soft docking'; Matching of molecular surface cubes. J. Mol. Biol., 219, 79-102.
-
(1991)
J. Mol. Biol.
, vol.219
, pp. 79-102
-
-
Jiang, F.1
Kim, S.-H.2
-
14
-
-
0026572775
-
Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques
-
Katchalski-Katzir, E., Shariv, I., Eisenstein, M., Friesem, A.A., Aflalo, C. and Vakser, I.A. (1992) Molecular surface recognition: Determination of geometric fit between proteins and their ligands by correlation techniques. Proc. Natl Acad. Sci. USA, 89, 2195-2199.
-
(1992)
Proc. Natl Acad. Sci. USA
, vol.89
, pp. 2195-2199
-
-
Katchalski-Katzir, E.1
Shariv, I.2
Eisenstein, M.3
Friesem, A.A.4
Aflalo, C.5
Vakser, I.A.6
-
15
-
-
0020491251
-
A geometric approach to macromolecule-ligand interactions
-
Kuntz, I.D., Blaney, J.M., Oatley, S.J., Langridge, R. and Ferrin, T.E. (1982) A geometric approach to macromolecule-ligand interactions. J. Mol. Biol., 161, 269.
-
(1982)
J. Mol. Biol.
, vol.161
, pp. 269
-
-
Kuntz, I.D.1
Blaney, J.M.2
Oatley, S.J.3
Langridge, R.4
Ferrin, T.E.5
-
16
-
-
0022105876
-
Molecular recognition. I. Automatic identification of topographic surface features
-
Lee, R.H. and Rose, G.D. (1985) Molecular recognition. I. Automatic identification of topographic surface features. Biopolymers, 24, 1613-1627.
-
(1985)
Biopolymers
, vol.24
, pp. 1613-1627
-
-
Lee, R.H.1
Rose, G.D.2
-
17
-
-
7344253780
-
-
Research Report MPI-1-95-1-023, Max-Planck-Institut für Informatik, Saarbrücken
-
Lenhof, H.-P. (1995) An Algorithm for the Protein Docking Problem. Research Report MPI-1-95-1-023, Max-Planck-Institut für Informatik, Saarbrücken.
-
(1995)
An Algorithm for the Protein Docking Problem
-
-
Lenhof, H.-P.1
-
18
-
-
0029489424
-
Segmentation of molecular surfaces based on their convex hull
-
IEEE Computer Society Press, Washington, DC
-
Meier, R., Ackermann, F., Herrmann, G., Posch, S. and Sagerer, G. (1995) Segmentation of molecular surfaces based on their convex hull. In Proceedings of the International Conference on Image Processing. IEEE Computer Society Press, Washington, DC, pp. 552-555.
-
(1995)
Proceedings of the International Conference on Image Processing
, pp. 552-555
-
-
Meier, R.1
Ackermann, F.2
Herrmann, G.3
Posch, S.4
Sagerer, G.5
-
19
-
-
84986432941
-
Automated docking with grid-based energy evaluation
-
Meng, E.C., Shoichet, B.K. and Kuntz, I.D. (1992) Automated docking with grid-based energy evaluation. J. Comput. Chem., 13, 505-524.
-
(1992)
J. Comput. Chem.
, vol.13
, pp. 505-524
-
-
Meng, E.C.1
Shoichet, B.K.2
Kuntz, I.D.3
-
20
-
-
0030598347
-
Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking
-
Meyer, M., Wilson, P. and Schomburg, D. (1996). Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking. J Mol. Biol , 264, 199-210.
-
(1996)
J Mol. Biol
, vol.264
, pp. 199-210
-
-
Meyer, M.1
Wilson, P.2
Schomburg, D.3
-
21
-
-
0028079323
-
Molecular surface recognition by a computer vision-based technique
-
Norel, R., Fischer, D., Wolfson, H. and Nussinov, R. (1994a) Molecular surface recognition by a computer vision-based technique. Protein Eng., 7, 39-46.
-
(1994)
Protein Eng.
, vol.7
, pp. 39-46
-
-
Norel, R.1
Fischer, D.2
Wolfson, H.3
Nussinov, R.4
-
22
-
-
0028166881
-
Shape complementarity at protein-protein interfaces
-
Norel, R., Lin, S., Wolfson, H. and Nussinov, R. (1994b) Shape complementarity at protein-protein interfaces. Biopolymers, 34, 933-940.
-
(1994)
Biopolymers
, vol.34
, pp. 933-940
-
-
Norel, R.1
Lin, S.2
Wolfson, H.3
Nussinov, R.4
-
23
-
-
0029089732
-
Molecular surface complementarity at protein-protein interfaces: The critical role played by surface normals at well placed, sparse, points in docking
-
Norel, R., Lin, S., Wolfson, H. and Nussinov, R. (1995) Molecular surface complementarity at protein-protein interfaces: The critical role played by surface normals at well placed, sparse, points in docking. J. Mol. Biol., 252, 263-273.
-
(1995)
J. Mol. Biol.
, vol.252
, pp. 263-273
-
-
Norel, R.1
Lin, S.2
Wolfson, H.3
Nussinov, R.4
-
24
-
-
0025785057
-
Protein docking and complementarity
-
Shoichet, B.K. and Kuntz, I.D. (1991) Protein docking and complementarity. J Mol Biol., 221, 327-346.
-
(1991)
J Mol Biol.
, vol.221
, pp. 327-346
-
-
Shoichet, B.K.1
Kuntz, I.D.2
-
25
-
-
0028410583
-
Detailed ab initio prediction of lysozyme-antibody complex with 1.6Å accuracy
-
Totrov, M. and Abagyan, R. (1994) Detailed ab initio prediction of lysozyme-antibody complex with 1.6Å accuracy. Nature Struct. Biol., 1, 259-263.
-
(1994)
Nature Struct. Biol.
, vol.1
, pp. 259-263
-
-
Totrov, M.1
Abagyan, R.2
-
26
-
-
0028984540
-
Protein docking for low resolution structures
-
Vakser, I.A. (1995) Protein docking for low resolution structures. Protein Eng., 8, 371-377.
-
(1995)
Protein Eng.
, vol.8
, pp. 371-377
-
-
Vakser, I.A.1
-
27
-
-
0028575449
-
Hydrophobie docking: A proposed enhancement to molecular recognition techniques
-
Vakser, I.A. and Aflalo, C. (1994) Hydrophobie docking: A proposed enhancement to molecular recognition techniques. Proteins Struct. Fund. Genet., 20, 320-329.
-
(1994)
Proteins Struct. Fund. Genet.
, vol.20
, pp. 320-329
-
-
Vakser, I.A.1
Aflalo, C.2
-
28
-
-
0021757436
-
A new force field for molecular mechanical simulation of nucleic acids and proteins
-
Weiner, S.J., Kollmann, P.A., Case, D., Chandra Singh, U., Ghio, C., Alagona, G., Profeta, S. and Weiner, P. (1984) A new force field for molecular mechanical simulation of nucleic acids and proteins. J. Am. Chem. Soc , 106, 765-784.
-
(1984)
J. Am. Chem. Soc
, vol.106
, pp. 765-784
-
-
Weiner, S.J.1
Kollmann, P.A.2
Case, D.3
Chandra Singh, U.4
Ghio, C.5
Alagona, G.6
Profeta, S.7
Weiner, P.8
-
29
-
-
0019883174
-
Affinities of amino acid side chains for solvent water
-
Wolfenden, R., Anderson, L., Cullis, P.M. and Southgate, C. (1981) Affinities of amino acid side chains for solvent water. Biochemistry, 20, 849.
-
(1981)
Biochemistry
, vol.20
, pp. 849
-
-
Wolfenden, R.1
Anderson, L.2
Cullis, P.M.3
Southgate, C.4
|