A rapid means of identifying wild rice species DNA using dot blots and genome-specific rDNA probes

Genome

Volumn 41, Issue 3, 1998, Pages 391-395

  McIntyre, C L ^a,b   Winberg, B C ^a  

^a UNIVERSITY OF MISSOURI   (United States)

^b CSIRO   (Australia)

Author keywords

Dot blots; Genome specific; RDNA; Rice

Indexed keywords

INTERGENIC SPACER FRAGMENT; PLANT GENETICS; PLANT GENOME; RIBOSOMAL DNA;

EMBRYOPHYTA; ORYZA; ORYZA AUSTRALIENSIS; ORYZA LATIFOLIA; ORYZA SATIVA; ZIZANIA;

EID: 0031697209     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g98-033     Document Type: Article

References (21)

1. Appels, R., and Honeycutt, R. 1986. rDNA: evolution over a billion years. In DNA systematics. Edited by S.K. Dutta. CRC Press, Boca Raton, Fla. pp. 81-135.
2. Besse, P., Lebrun, P., Seguin, M., and Lanaud, C. 1993. Ribosomal DNA variations in wild and cultivated rubber tree (Hevea brasiliensis). Genome, 36: 1049-1057.
3. Besse, P., McIntyre, C.L., and Berding, N. 1997. Ribosomal DNA variations in Erianthus, a wild sugarcane relative (Andropogoneae -Saccharinae). Theor. Appl. Genet. In press.
4. Cordesse, F., Second, G., and Delseny, M. 1990. Ribosomal gene spacer length variability in cultivated and wild rice species. Theor. Appl. Genet. 79: 81-88.
5. Cordesse, F., Grellet, F., Reddy, A.S., and Delseny, M. 1992. Genome specificity of rDNA spacer fragments from O. sativa L. Theor. Appl. Genet. 83: 864-870.
6. Delseny, M., McGrath, J.M., This, P.. Chevre, A.M., and Quiros, C.F. 1990. Ribosomal RNA genes in diploid and amphidiploid Brassica and related species: organisation, polymorphism, and evolution. Genome, 33: 733-744.
7. Dutta, S.K., Chaudhuri, R.K., Verma, M., and Verma, M. 1987. Molecular cloning of ribosomal RNA genes of Oryza sativa and its use in the identification of subspecies of rice. Nucleus, 30: 83-93.
8. Flavell, R.B., O'Dell, M., Sharp, P., Nevo, E., and Beiles, A. 1986. Variation in the intergenic spacer of ribosomal DNA of wild wheat, Triticum dicoccoides, in Israel. Mol. Biol. Evol. 3: 547-558.
9. Jena, K.K., and Kochert, G. 1991. Restriction fragment length polymorphism analysis of the CCDD genome species of the genus Oryza. Plant Mol. Biol. 16: 831-839.
10. Lanaud, C., Tezenal Du Montcel, H., Jolivot, M.P., Glaszmann, J.C., and Gonzalez De Leon, D. 1992. Variations of ribosomal spacer length among wild and cultivated banana. Heredity, 68: 147-156.
11. Lawrence, G.J., and Appels, R. 1986. Mapping the nucleolus organiser region, seed protein loci and isozyme loci on chromosome 1R in rye. Theor. Appl. Genet. 71: 742-749.
12. Liu, K.D., Yang, G.P., Zhu, Q.F., Wang, X.M., and Maroof, M.A.S. 1996. Extraordinarily polymorphic ribosomal DNA in wild and cultivated rice. Genome, 39: 1109-1116.
13. McIntyre, C.L., Winberg, B.C., Houchins, K., Appels, R., and Baum, B.R. 1992. Relationships between Oryza species (Poaceae) based on 5S DNA sequences. Plant Syst. Evol. 183: 249-264.
14. Morishima, H., and Oka, H.-L. 1960. The pattern of interspecific variation in the genus Oryza: its quantitative representation by statistical methods. Evolution, 14: 153-165.
15. Oono, K., and Sugiura, M. 1980. Heterogeneity of the ribosomal RNA gene clusters in rice. Chromosoma, 76: 85-89.
16. Saghai-Maroof, M.A., Soliman, K.M., Jorgensen, R.A., and Allard, R.W. 1984. Ribosomal DNA spacer-length polymorphisms in barley: Mendelian inheritance, chromosomal location, and population dynamics. Proc. Natl. Acad. Sci. U.S.A. 81: 8014-8018.
17. Sano, Y., and Sano, T. 1990. Variation in the intergenic spacer region of ribosomal DNA in cultivated and wild rice species. Genome. 33:209-218.
18. Takaiwa, R., Oono, K., and Sugiura, M. 1985. Nucleotide sequence of the 17S-25S spacer region from the rice rDN A. Plant Mol. Biol. 4: 355-364.
19. Vaughan, D.A. 1989. The genus Oryza L.: current status of taxonomy. IRRI Res. Pap. Ser. 138: 1-21.
20. Westneat, D.A., Noon, W.A., Reeve, H.K., and Aquadro, C.F. 1988. Improved hybridisation conditions for DNA "fingerprints" probes with M13. Nucleic Acids Res. 16: 4161.
21. Zimmer, E.A., Jupe, E.R., and Walbot, V. 1988. Ribosomal gene structure, variation and inheritance in maize and its ancestors. Genetics, 120: 1125-1136.