Two functionally distinct regions upstream of the cbb(I) operon of Rhodobacter sphaeroides regulate gene expression

Journal of Bacteriology

Volumn 180, Issue 18, 1998, Pages 4903-4911

  Dubbs, James M ^a   Tabita, F Robert ^a  

^a OHIO STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL RNA; BETA GALACTOSIDASE; MESSENGER RNA; PLASMID DNA;

ARTICLE; CONTROLLED STUDY; DNA SEQUENCE; ENZYME ASSAY; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; NONHUMAN; OPERON; PRIORITY JOURNAL; PROMOTER REGION; RHODOBACTER SPHAEROIDES; RNA TRANSLATION; TRANSCRIPTION INITIATION;

BACTERIA (MICROORGANISMS); ESCHERICHIA COLI; NEGIBACTERIA; PROKARYOTA; RHODOBACTER SPHAEROIDES; RHODOPSEUDOMONAS;

EID: 0031682152     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.180.18.4903-4911.1998     Document Type: Article

References (48)

1. Ausubel, F. M., R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl. 1987. Current protocols in molecular biology, vol. 1. John Wiley and Sons, Inc., New York, N.Y.
2. Bishop, R. E., and J. H. Weiner. 1993. Overproduction, solubilization, purification and DNA-binding properties of AmpR from Citrobacter freundii. Eur. J. Biochem. 213:405-412.
3. Cantrell, A., and D. A. Bryant. 1987. Molecular cloning and nucleotide sequence of the psaA and psaB genes of the cyanohacterium Synechococcus sp. PPC 7002. Plant Mol. Biol. 9:453-468.
4. 2 fixation operon of Rhodobacter sphaeroides. J. Biol. Chem. 266:20447-20452.
5. - mutant of Rhodobacter sphaeroides. J. Bacteriol. 170:320-329.
6. Dubbs, J. M., and D. A. Bryant. 1991. Molecular cloning and transcriptional analysis of the cpeBA operon of the cyanobacterium Pseudanabaena sp. PCC 7409. Mol. Microbiol. 5:3073-3085.
7. Dubendorff, J. W., and F. W. Studier. 1991. Controlling basal expression in an inducible T7 expression system by blocking the target T7 promoter with lac repressor. J. Mol. Biol. 219:45-59.
8. Falcone, D. L., and F. R. Tabita. 1991. Expression of endogenous and foreign ribulose 1,5-bisphosphate carboxylase-oxygenase (RubisCO) genes in a RubisCO deletion mutant of Rhodobacter sphaeroides. J. Bacteriol. 173: 2099-2108.
9. Falcone, D. L., R. G. Quivey, Jr., and F. R. Tabita. 1988. Transposon mutagenesis and physiological analysis of a strain containing inactivated form I and form II ribulose bisphosphate carboxylase/oxygenase genes in Rhodobacter sphaeroides. J. Bacteriol. 170:5-11.
10. 2 fixation gene expression in a ribulose-1,5-bisphosphate carboxylase-oxygenase deletion strain of Rhodospirillum rubrum. J. Bacteriol. 175:5066-5077.
11. Figurski, D., and D. R. Helinsky. 1979. Replication of an origin-containing derivative of the plasmid RK2 dependent on a plasmid function provided trans. Proc. Natl. Acad. Sci. USA 76:1648-1652.
12. 2 fixation genes p. 1107-1124. In R. E. Blankenship, M. T. Madigan, and C. E. Bauer (ed.), Anoxygenic photosynthetic bacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
13. Gibson, J. L., and F. R. Tabita. 1977. Different molecular forms of ribulose-1,5-bisphosphate carboxylase from Rhodopseudomonas sphaeroides. J. Biol. Chem. 252:943-949.
14. Gibson, J. L., H.-J. Chen, P. A. Tower, and F. R. Tabita. 1990. The form II fructose-1,6-bisphosphatase and phosphoribulokinase genes form part of a large operon in Rhodobacter sphaeroides: primary structure and insertional mutagenesis. Biochemistry 29:8085-8093.
15. 2 fixation operon of Rhodobacter sphaeroides. J. Biol. Chem. 266:14646-14653.
16. Gibson, J. L., and F. R. Tabita. 1993. Nucleotide sequence and functional analysis of CbbR, a positive regulator of the Calvin cycle operons of Rhodobacter sphaeroides. J. Bacteriol. 175:5778-5784.
17. Gibson, J. L., and F. R. Tabita. 1996. The molecular regulation of the reductive pcntose phosphate pathway in proteobacteria and cyanobacteria. Arch. Microbiol. 166:141-150.
18. Goethals, K., M. Van Montague, and M. Holsters. 1992. Conserved motifs in a divergent nod box of Azorhizobium caulinodans ORS571 reveal a common structure in promoters regulated by LysR-type proteins. Proc. Natl. Acad. Sci. USA 89:1646-1650.
19. Hallenbeck, P. L., R. Lerchen, P. Hessler, and S. Kaplan. 1990. Roles of CfxA, CfxB, and external electron acceptors in regulation of ribulose 1,5-bisphosphate carboxylase/oxygenase in Rhodobacter sphaeroides. J. Bacteriol. 172:1736-1748.
20. 2 fixation critical for photosynthetic growth of Rhodobacter sphaeroides. J. Bacteriol. 172:1749-1761.
21. Jianzhong, H., W. Yindeeyoungyeon, R. P. Garg, T. P. Denny, and M. A. Schell. 1998. Joint transcriptional control of xpsR, the unusual signal integrator of the Ralstonia solanacearum virulence gene regulatory network, by a response regulator and a LysR-type transcriptional activator. J. Bacteriol. 180:2736-2743.
22. Jouanneau, Y., and F. R. Tabita. 1986. Independent regulation of synthesis of form I and form II ribulose bisphosphate carboxylase-oxygenase in Rhodopseudomonas sphaeroides. J. Bacteriol. 165:620-624.
23. Knauf, V. C., and W. N. Nester. 1982. Wide host range cloning vectors: a cosmid clone bank of an Agrobacterium Ti plasmid. Plasmid 8:45-54.
24. Kusano, T., and K. Sugawara. 1993. Specific binding of Thiobacillus ferrooxidans RbcR to the intergenic sequence between the rbc operon and the rbcR gene. J. Bacteriol. 175:1019-1025.
25. 2 assimilation operons of Alcaligenes eutrophus. J. Bacteriol. 177:6568-6574.
26. 2 as the energy source. J. Bacteriol. 137:524-530.
27. Maniatis, T., E. F. Fritsch, and J. Sambrook. 1982. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory Press. Cold Spring Harbor, N.Y.
28. Meijer, W., A. C. Arnberg, H. G. Enequist, P. Terpstra, M. E. Lindstrom, and L. Dijkhuizen. 1991. Identification and organization of carbon dioxide fixation genes in Xanthobacter flavus H4-14. Mol. Gen. Genet. 225:320-330.
29. Omerod, J. G., K. D. Omerod, and H. Gest. 1961. Light dependent utilization of organic compounds and photoproduction of hydrogen by photosynthetic bacteria: relationship with nitrogen metabolism. Arch. Biochem. Biophys. 94:449-463.
30. Paoli, G. C., S. M. Morgan, F. R. Tabita, and J. M. Shively. 1995. Expression of the cbbLcbbS and cbbM genes and distinct organization of the cbb Calvin cycle structural genes of Rhodobacter capsulatus. Arch. Microbiol. 164:396-405.
31. Paoli, G. C., and F. R. Tabita. 1998. Aerobic lithoautotrophic growth and RubisCO function in Rhodobacter capsulatus and a spontaneous gain of function mutant of Rhodobacter sphaeroides. Arch. Microbiol. 170:8-17.
32. 31a.Paoli, G. C., and F. R. Tabita. Unpublished results.
33. Pridmore, R. D. 1987. New and versatile cloning vectors with kanamycin resistance marker. Gene 56:309-312.
34. 2 fixation in Rhodobacler sphaeroides. J. Bacteriol. 178:12-18.
35. Shapira, S. K., J. Chou, F. V. Richaud, and M. J. Casadaban. 1983. New versatile plasmid vectors tor expression of hybrid proteins coded by a cloned gene fused to lacZ gene sequences encoding an enzymatically active carboxy-terminal portion of β-galactosidase. Gene 25:71-82.
36. Studier, F. W., A. H. Rosenberg, J. J. Dunn, and J. W. Dubendorff. 1990. Use of T7 RNA polymerase to direct expression of cloned genes. Methods Enzymol. 185:60-89.
37. Suwanto, A., and S. Kaplan. 1989. Physical and genetic mapping of the Rhodobacter sphaeroides genome: presence of two unique circular chromosomes. J. Bacteriol. 171:5858-5859.
38. Suwanto, A., and S. Kaplan. 1992. Chromosome transfer in Rhodobacter sphaeroides: Hfr formation and genetic evidence for two unique circular chromosomes. J. Bacteriol. 174:1135-1145.
39. Tabita, F. R. 1988. Molecular and cellular regulation of autotrophic carbon dioxide fixation in microorganisms. Microbiol. Rev. 52:155-189.
40. 2 fixation in purple bacteria, p. 885-914. In R. E. Blankenship, M. T. Madigan, and C. E. Bauer (ed.), Anoxygenic photosynthetic bacteria. Kluwer Academic Publishers, Dordrecht, The Netherlands.
41. 2 fixation enzymes of Xanthobacter flavus. J. Bacteriol. 175:6097-6104.
42. 2 fixation by Xanthobacter flavus is an NADPH sensor. J. Bacteriol. 180:1411-1417.
43. Viale, A. M., H. Kobayashi, T. Akazawa, and S. Henikoff. 1991. rbcR, a gene coding for a member of the LysR family of transcriptional regulators, is located upstream of the expressed set of ribulose-1,5-bisphosphate carboxylase/oxygenase genes in the photosynthetic bacterium Chromatium vinosum. J. Bacteriol. 173:5224-5229.
44. 2 fixation in Rhodobacter sphaeroides and evidence that ribulose bisphosphate carboxylase/oxygenase activity serves to maintain the redox balance of the cell. J. Bacteriol. 175:3372-3379.
45. Weaver, K. E., and F. R. Tabita. 1983. Isolation and partial characterization of Rhodopseudomonas sphaeroides mutants defective in regulation of ribulose bisphosphate carboxylase/oxygenase. J. Bacteriol. 156:507-515.
46. Whitman, W., and F. R. Tabita. 1976. Inhibition of ribulose 1,5-bisphosphate carboxylase by pyridoxal 5-phosphate. Biochem. Biophys. Res. Commun. 71: 1034-1039.
47. 2 fixation in Alcaligenes eutrophus. Mol. Microbiol. 5: 2695-2705.
48. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.