Molecular versus morphologic variability in Ammonia spp. (foraminifera, protozoa) from the lagoon of Venice, Italy

Revue de Micropaleontologie

Volumn 41, Issue 1, 1998, Pages 59-69

  Holzmann, Maria ^a   Piller, Werner E ^a   Zaninetti, Louisette ^b   Fenner, Rogerio ^b   Martini, Rossana ^b   Serandrei Barbero, Rossana ^c   Pawlowski, Jan ^b  

^a UNIVERSITY OF VIENNA   (Austria)

^b UNIVERSITY OF GENEVA   (Switzerland)

^c CNR   (Italy)

Author keywords

Ammonia; Foraminifera; LSU rDNA; Molecular phylogeny; Morphology

Indexed keywords

AMMONIA; MOLECULAR GENETICS; MORPHOLOGY; RIBOSOMAL DNA; SCANNING ELECTRON MICROSCOPY; SEQUENCE ANALYSIS;

AMMONIA; FORAMINIFERA; TAXONOMY; ZOOBENTHOS;

ITALY, VENETO, VENICE LAGOON;

AMMONIA;

EID: 0031668440     PISSN: 00351598     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0035-1598(98)90098-8     Document Type: Article

References (51)

1. ALBANI A. and SERANDREI-BARBERO R. (1982): A foraminiferal fauna from the lagoon of Venice, Italy. Journ. Foram. Res., Washington, vol. 12, no 3, p. 234-241.
2. ALBANI A. and SERANDREI-BARBERO R. (1990): I Foraminifera della Laguna e del Golfo di Venezia. Memorie Di Scienze Geologiche dell'Università di Padova, Padova, vol. 62, p. 271-341.
3. ALBANI A., FAVERO V.M. and SERANDREI-BARBERO R. (1991): The distribution and ecological significance of recent foraminifera in the lagoon south of Venice (Italy). Rev. Espan. Micropaleont., Madrid, vol. 23, no 2, p. 29-45.
4. ALMOGI-LABIN A., PERELIS-GROSSOVICZ L. and RAAB M. (1992): Living Ammonia from a hypersaline inland pool, Dead Sea area, Israel. Journ. Foram. Res., Washington, vol. 22, no 3, p. 257-266.
5. BAIROCH A. (1989): PC/Gene, IntelliGenetics, Inc, Geneva.
6. BANNER F.T. and WILLIAMS E. (1973): Test structure, organic skeleton and extrashell cytoplasm of Ammonia Brünnich. Journ. Foram. Res., Washington, vol. 3, no 2, p. 49-69.
7. BHADSHAW J.S. (1957): Laboratory studies on the rate of growth of the foraminifer, "Streblus beccarii (Linné) var. tepida (CUSHMAN)". Journ. Paleont., Lawrence, Kansas, vol. 31, no 6, p. 1138-1147.
8. CIFELLI R. (1962): The morphology and structure of Ammonia beccarii (Linné). Contr. Cushman Found. Foram. Res., New York, vol. 13, no 4, p. 119-126.
9. CLARK C.G., TAGUE B.W, WARE V.C. and GERBI S.A. (1984): Xenopus laevis 28S ribosomal RNA. a secondary structure model and its evolutionary and functional implications: Nuc. Ac. Res., Oxford, vol. 12, p. 6197-6220.
10. CUSHMAN J.A. (1926): Recent foraminifera from Puerto Rico: Carnegie Institute, Washington, Publication no 344 (Department of Marine Biologie, Papers, vol. 23), Washington D. C., 79 p.
11. CUSHMAN J.A. (1928): On Rotalia beccarii (LINNÉ): Contr. Cushman Lab. Foram. Res., Sharon, Massachusetts, vol. 4, no 4, p. 103-107.
12. DANIELS C.H. (1970): Quantitative oekologische Analyse der zeitlichen und raeumlichen Verteilung rezenter Foraminiferen im Limski Kanal bei Rovinj (Noerdliche Adria). Goettinger Arbeit zur Geologie und Palaeontologie, Goettingen, vol. 8, p. 1-109.
13. FELSENSTEIN J. (1988): Phylogenies from molecular sequences: inference and reliability. Ann. Rev. Genetics., Palo Alto, California, vol. 22, p. 521-565.
14. GOLDSTEIN S.T. and MOODLEY L. (1993): Gametogenesis and the life cycle of the foraminifera Ammonia beccarii (Linné) forma tepida (Cushman). Journ. Foram. Res., Washington, vol. 23, no 4, p. 213-220.
15. GUNDERSON J.H., SOGIN M.L., WOLLETT G., HOLLINGDALE M., DE LA CRUZ V.F., WATERS A.P. and MCCUTCHAN T.F. (1987): Structurally distinct, stage-specific ribosomes occur in Plasmodium. Science, Washington, vol. 238, p. 933-937.
16. HASSOUNA N., MICHOT B. and BACHELLERIE J.P. (1984): The complete nucleotide sequence of mouse 28 S rRNA gene. Implications for the process of size increase of the large subunit rRNA in higher eukaryotes. Nuc. Ac. Res., Oxford, vol. 12, p. 3563-3583.
17. HAYNES J.R. (1992): Supposed pronounced ecophenotypy in foraminifera. Journ. Micropaleont., London, vol. 11, p. 59-63.
18. HOFKER J. (1960): Foraminiferen aus dem Golf von Neapel. Palaeont. Zeitschrift, Stuttgart, vol. 34, p. 233-262.
19. HOLZMANN M. and PAWLOWSKI J.: Preservation of Foraminifera for DNA extraction and PCR amplification. Journ. Foram. Res., Washington, vol. 26, no 3, p. 264-267.
20. HOLZMANN M., PILLER W. and PAWLOWSKI J.: Sequence variations in large-subunit ribosomal RNA gene of Ammonia (Foraminifera, Protozoa) and their evolutionary implications. Journ. Mol. Evol., New York, vol. 43, p. 145-151.
21. HOHENEGGER J., PILLER W.E. and BAAL C. (1993): Horizontal and vertical spatial microdistribution of foraminifers in the shallow subtidal Gulf of Trieste, Northern Adriatic Sea. Journ. Foram. Res., Washington, vol. 23, no 2, p. 79-101.
22. HOTTINGER L. (1980): Rotaliid Foraminifera: Schweizerische Paläont. Abh., Basel, vol. 101, p. 3-154.
23. JORISSEN F.J. (1988): Benthic foraminifera from the Adriatic Sea; principles of phenotypic variation. Utrecht Micropaleont. Bull., Utrecht, vol. 37, p. 7-139.
24. KIMURA M. (1980): A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journ. Mol. Evol., New York, vol. 16, p. 111-120.
25. KRAUS O. (1989): Phylogenetic Systematics: Introductionary remarks, in: Abhandlungen des Naturwissenschaftlichen Vereins in Hamburg, Schmidt-Kittler, N and Willmann, R., (eds.), Paul Parey, Hamburg, p. 11-43.
26. LARSEN N. G.J., MAIDAK B.L., MCCAUGHEY M.J., OVERBEEK R., MACKE T.J., MARSH T.L. and WOESE C.R. (1993): The ribosomal database project. Nuc. Ac. Res., Oxford, vol. 21, p. 3021-3023.
27. LARSON A. and WILSON A.C. (1989): Patterns of Ribosomal RNA Evolution in Salamanders. Mol. Biol. Evol., Lawrence, Kansas, vol. 6, no 2, p. 131-153.
28. LINNÉ C. (1758): Systemae naturae, edition 10, Stockholm, Sweden, tomus 1, p. 710.
29. LIU Y., ROCOURT M., PAN S., LEIBOWITZ M.J. (1992): Sequence and variability of the 5.8S and 26S rRNA genes of Pneumocystis carinii. Nuc. Ac. Res., Oxford, vol. 20, no 14, p. 3763-3772.
30. MURRAY J.W. (1991): Ecology and Paleoecology of Benthic Foraminifera. Longman, Harlow, 397 p.
31. ORBIGNY A. d', (1839): Foraminifères: In: Ramon de la Sagra, Histoire physique et naturelle de l'Ile de Cuba. A. Bertrand, Paris, France, p. 99.
32. PACE N.R., OLSEN G.J. and WOESE C.R. (1986): Ribosomal RNA Phylogeny and the Primary Lines of Evolutionary Descent. Cell, Cambridge, Massachusetts, vol. 45, p. 325-326.
33. PAWLOWSKI J., BOLIVAR I., MAFIA J.G. and GOUY M. (1994a): Phylogenetic position of foraminifera inferrred from LSU rRNA gene sequences. Mol. Biol. Evol., Lawrence, Kansas, vol. 11, p. 929-938.
34. PAWLOWSKI J., BOLIVAR I., FAHRNI J. and ZANINETTI L. (1994b): Taxonomic identification of foraminifera using ribosomal DNA sequences. Micropaleontology, New York, vol. 40, no 4, p. 373-377.
35. PAWLOWSKI J., BOLIVAR I., FAHRNI J. and ZANINETTI L. (1995): DNA analysis of "Ammonia beccarii" morphotypes: one or more species. Mar. Micropal., Amsterdam, vol. 26, p. 171-178.
36. PAWLOWSKI J., BOLIVAR I., FAHRNI J., CAVALIER-SMITH T. and GOUY M. (1996): Early origin of foraminifera suggested by SSU rRNA gene sequences. Mol. Biol. Evol., Lawrence, Kansas, vol. 13, no 3, p. 445-450.
37. PELANDAKIS M. and SOLIGNAC M. (1993): Molecular phylogeny of Drosophila based on ribosomal RNA sequences. Journ. Mol. Evol., New York, vol. 37, p. 525-543.
38. QU L.H., NICOLOSO M. and BACHELLERIE J.P. (1988): Phylogenetic calibration of the 5'terminal domain of large rRNA achieved by determining twenty eucaryotic sequences. Journ. Mol. Evol., New York, vol. 28, p. 113-114.
39. RAGAN M.A. (1988): Ribosomal RNA and the major lines of evolution: a perspective. Biosystems, Amsterdam, vol. 21, p. 177-188.
40. RIDLEY M. (1993): Evolution: Blackwell Scientific Publications, Boston, 670 p.
41. SAITOU N. and NEI M. (1987): The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. biol. Evol., Lawrence, Kansas, vol. 4, p. 406-425.
42. SCHNITKER D. (1974): Ecophenotypic variation in Ammonia beccarii (LINNÉ): Journ. Foram. Res., Washington, vol. 4, p. 216-223.
43. SCHULTZE M.S. (1854): Ueber den Organismus der Polythalamien (Foraminiferen) nebst Bemerkungen ueber die Rhizopoden im allgemeinen. Leipzig, Deutschland, Engelmann, p. 54.
44. SERANDKEI-BARBERO R., ALBANI A.D. and FAVERO V.M. (1989): Distribuzione dei foraminiferi recenti nella laguna a nord di Venezia. Boll. Soc. Geol. Italia, Roma, p. 279-288.
45. SKELTON P. (1993): Evolution: A biological and paleontological approach. Addison-Wesley-Publishing Company, Wokingham, 1064 p.
46. VAN DE PEER Y., NEEFS J.M., DE RIJK P. and DE WACHTER R. (1993): Reconstructing evolution from eukaryotic small-ribosomal-subunit RNA sequences: Calibration of the Molecular Clock. Journ. Mol. Evol., New York, vol. 37, p. 221-232.
47. WALTON W.R. and SLOAN B.J. (1990): The genus Ammonia. BRÜNNICH, 1772: its geographic distribution and morphologic variability. Journ. Foram. Res., Washington, vol. 20, no 2, p. 128-156.
48. WANG P. and LUTZE G.F. (1986): Inflated later chambers: ontogenetic changes of some recent hyaline benthic foraminifera. Journ. Foram. Res., Washington, vol. 16, no 1, p. 48-62.
49. WOESE C.R., KANDLER O. and WHEELIS M.L. (1990): Towards a natural system of organisms: Proposal for the domains Archae, Bacteria, and Eucarya. Proc. Nat. Acad. Sci., USA, Washington, vol. 87, p. 4576-4579.
50. ZANINETTI L. (1982): Les Foraminifères des marais salants de Salin-de-Giraud (Sud de la France): milieu de vie et transport dans le salin, comparaison avec les microfaunes marines. Géol. Méditerr., Marseille, vol. 9, n. 4, p. 447-470.
51. ZANINETTI L. (1984): Les Foraminifères du salin de Bras del Port (Santa Pola, Espagne), avec remarques sur la distribution des Ostracodes. Rev. Invest. Geol., Barcelona, vol. 38/39, p. 123-138.