Photochemistry in dried polymer films incorporating the deionized blue membrane form of bacteriorhodopsin

Biophysical Journal

Volumn 75, Issue 4, 1998, Pages 1619-1634

  Tallent, Jack R ^a   Stuart, Jeffrey A ^a   Song, Q Wang ^a   Schmidt, Edward J ^a   Martin, Charles H ^a   Birge, Robert R ^a  

^a SYRACUSE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIORHODOPSIN; POLYMER;

ARTICLE; HALOBACTERIUM SALINARUM; LASER; MOLECULAR MODEL; NONHUMAN; PHOTOCHEMISTRY; PROTEIN BINDING; SPECTROSCOPY;

HALOBACTERIUM SALINARUM; NEGIBACTERIA;

EID: 0031668120     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(98)77605-2     Document Type: Article

References (72)

1. Balashov, S., R. Govindjee, M. Kono, E. Imasheva, E. Lukashev, T. Ebrey, R. Crouch, D. Menick, and Y. Feng. 1993. Effect of the arginine-82 to alanine mutation in bacteriorhodopsin on dark adaptation, proton release, and the photochemical cycle. Biochemistry. 32:10331-10343.
2. Balashov, S. P., E. S. Imasheva, R. Govindjee, M. Sheves, and T. G. Ebrey. 1996. Evidence that aspartate-85 has a higher pKa in all-trans than in 13-cis bacteriorhodopsin. Biophys. J. 71:1973-1984.
3. Birge, R. R. 1990a. Nature of the primary photochemical events in rhodopsin and bacteriorhodopsin. Biochim. Biophys. Acta. 1016:293-327.
4. Birge, R. R. 1990b. Photophysics and molecular electronic applications of the rhodopsins. Annu. Rev. Phys. Chem. 41:683-733.
5. Birge, R. R. 1994. Bacteriorhodopsin, a nonlinear proton pump. Nature. 371:659-660.
6. Birge, R. R., D. S. K. Govender, K. C. Izgi, and E. H. L. Tan. 1996. Role of calcium in the proton pump of bacteriorhodopsin. Microwave evidence for a cation-gated mechanism. J. Phys. Chem. 100:9990-10004.
7. Birge, R. R., and L. M. Hubbard. 1980. Molecular dynamics of cis-trans isomerization in rhodopsin. J. Am. Chem. Soc. 102:2195-2204.
8. Birge, R. R., B. Parsons, Q. W. Song, and J. R. Tallent. 1997. Protein-based three-dimensional memories and associative processors. In Molecular Electronics. Blackweel Science Ltd., Oxford. 439-471.
9. Buckert, U., and N. L. Allinger. 1982. Molecular Mechanics. American Chemical Society, Washington, D.C.
10. Chang, C.-H., J. G. Chen, R. Govindjee, and T. Ebrey. 1985. Cation binding by bacteriorhodopsin. Proc. Natl. Acad. Sci. USA. 82:396-400.
11. Chang, C.-H., R. Jonas, R. Govindjee, and T. G. Ebrey. 1988. Regeneration of blue and purple membranes from deionized bleached membranes. Photochem. Photobiol. 47:261-265.
12. Chang, C.-H., R. Jonas, S. Melchiore, R. Govindhee, and T. G. Ebrey. 1986. Mechanism and role of divalent cation binding of bacteriorhodopsin. Biophys. J. 49:731-739.
13. Chang, C.-H., S. Y. Liu, R. Jonas, and R. Govindjee. 1987. The pink membrane: the stable photoproduct of deionized purple membrane. Biophys. J. 52:617-623.
14. Chronister, E. L., and M. M. El-Sayed. 1987. Time-resolved resonance Raman spectra of the photocycle intermediates of acid and deionized bacteriorhodopsin. Photochem. Photobiol. 45:507-513.
15. Chung-Ho, C., R. Jonas, T. G. Ebrey, M. Hong, and L. Eisenstein. 1987. Protonation changes in the interconversions of the pink membrane, blue membrane and purple membrane. In Biophysical Studies of Retinal Proteins. University of Illinois Press. 156-166.
16. Corcoran, T. C., K. Z. Ismail, and M. A. El-Sayed. 1987. Evidence for the involvement of more than one metal cation in the Schiff base deprotonation process during the photocycle of bacteriorhodopsin. Proc. Natl. Acad. Sci. USA. 84:4094-4098.
17. Curtis, K., and D. Psaltis. 1992. Recording of multiple holograms in photopolymer films. Appl. Opt. 31:7425-7428.
18. Dewar, M. J. S., and W. Thiel. 1977. Ground states of molecules. 38. The MNDO method. Approximations and parameters. J. Am. Chem. Soc. 99:4899.
19. Dudek, M. J., and J. W. Ponder. 1995. Accurate modeling of the intramolecular electrostatic energy of proteins. J. Comput. Chem. 16:791-816.
20. Duñach, M., M. Seigneuret, J.-L. Riguad, and E. Padrós. 1988. Influence of cations on the blue to purple transition of bacteriorhodopsin. J. Biol. Chem. 263:17378-17384.
21. Ebrey, T. G. 1993. Light energy transduction in bacteriorhodopsin. In Thermodynamics of Membrane Receptors and Channels. CRC Press, Boca Raton, FL. 353-387.
22. El-Sayed, M. A. 1992. On the molecular mechanisms of the solar to electric energy conversion by the other photosynthetic system in nature, bacteriorhodopsin. Accts. Chem. Res. 25:279-286.
23. El-Sayed, M. A., D. Yang, S.-K. Yoo, and N. Shang. 1995. The effect of different metal cation binding on the proton pumping in bacteriorhodopsin. Israel J. Chem. 35:465-474.
24. Fischer, U. C., P. Towner, and D. Oesterheldt. 1981. Light induced isomerization, at acidic pH, initiates hydrolysis of bacteriorhodopsin to bacterio-opsin and 9-cis-retinal. Photochem. Photobiol. 33:529-537.
25. Grigorieff, N., T. A. Ceska, K. H. Downing, J. M. Baldwin, and R. Henderson. 1996. Electron-crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259:393-421.
26. Gross, R. B., A. T. Todorov, and R. R. Birge. 1995. The wavelength-dependent refractive index change associated with the blue to pink membrane photochemical conversion in bacteriorhodopsin. In Applications of Photonic Technology. Plenum Press, New York. 115-121.
27. Gu, C., J. Hong, I. McMichael, R. Saxena, and F. Mok. 1992. Cross-talk-limited storage capacity of volume holographic memory. J. Opt. Soc. Am. A9:1978-1983.
28. D96N. J. Phys. Chem. 96:4679-4685.
29. Haran, G., K. Wynne, A. Xie, Q. He, M. Chance, and R. M. Hochstrasse. 1996. Excited state dynamics of bacteriorhodopsin revealed by transient stimulated emission spectra. Chem. Phys. Lett. 261:389-395.
30. Hasson, K. C., F. Gai, and P. A. Anfinrud. 1996. The photoisomerization of retinal in bacteriorhodopsin: experimental evidence for a three-state model. Proc. Natl. Acad. Sci. USA. 93:15124-15129.
31. Heanue, J. F., M. C. Bashaw, and L. Hesselink. 1994. Volume holographic storage and retrieval of digital data. Science. 265:749-752.
32. Henderson, R., J. M. Baldwin, T. A. Ceska, F. Zemlin, E. Beckmann, and K. H. Downing. 1990. Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213: 899-929.
33. Heyn, M. P., C. Dudda, H. Otto, F. Seiff, and I. Wallat. 1989. The purple to blue transition of bacteriorhodopsin is accompanied by a loss of the hexagonal lattice and a conformational change. Biochemistry. 28: 9166-9172.
34. Jonas, R., and T. G. Ebrey. 1991. Binding of a single divalent cation directly correlates with the blue-to-purple transition in bacteriorhodopsin. Proc. Natl. Acad. Sci. USA. 88:149-153.
35. Kamo, N., M. Yoshimoto, Y. Kobatake, and S. Itoh. 1987. Formation of blue membrane of bacteriorhodopsin by addition of tetrakis(4-fluorophenyl)boron, an hydrophobic anion. Biochim. Biophys. Acta. 904:179-186.
36. Kimura, Y., A. Ikegami, and W. Stoeckenius. 1984. Salt and pH-dependent changes of the purple membrane absorption spectrum. Evidence for changes in conformation of the protein. Photochem. Photobiol. 40: 641-646.
37. Koyama, Y., H. Nakasu, Y. Mukai, and F. Tokunaga. 1993. Isomerization of the retinylidene chromophore of bacteriorhodopsin in light adaptation: intrinsic isomerization of the chromophore and its control by the apo-protein. Photochem. Photobiol. 57:732-738.
38. Lanyi, J. K. 1995. Bacteriorhodopsin as a model for proton pumps. Nature. 375:461-463.
39. Liu, S. Y., and T. G. Ebrey. 1987a. A new method to prepare blue membrane by removing cations from the purple membrane by electrolysis. Photochem. Photobiol. 46:557-559.
40. Liu, S. Y., and T. G. Ebrey. 1987b. The quantum efficiency for the interphotoconversion of the blue and pink forms of purple membrane. Photochem. Photobiol. 46:263-267.
41. Maeda, A., T. Iwasa, and T. Yoshizawa. 1980. Formation of 9-cis-and 11-cis-retinal pigments from bacteriorhodopsin by irradiating purple membrane in acid. Biochemistry. 19:3825.
42. Maeda, A., I. Tatsuo, and T. Yoshizawa. 1981. Photoreaction of the acidified form of bacteriorhodopsin and its 9-cis derivative in purple membrane at low temperatures. Photochem. Photobiol. 33:559-565.
43. Martin, C. H., and R. R. Birge. 1998. Reparameterizing MNDO for excited state calculations using ab initio effective Hamiltonian theory: application to the 2,4-pentadien-1-iminium cation. J. Phys. Chem. A. 102: 852-860.
44. Martin, C. H., Z. P. Chen, and R. R. Birge. 1997. Towards a bacteriorhodopsin-silicon neuromorphic photosensor. In Proc. Pacific Symp. Biocomputing. World Scientific, Maui. 268-279.
45. Mathies, R. A., S. W. Lin, J. B. Ames, and W. T. Pollard. 1991. From femtoseconds to biology: mechanism of bacteriorhodopsin's light-driven proton pump. Annu. Rev. Biophys. Biophys. Chem. 20:491-518.
46. 13C CP-MAS NMR investigation. FEBS Lett. 303:237-241.
47. Mowery, P. C., R. H. Lozier, Q. Chae, Y. W. Tseng, M. Taylor, and W. Stoeckenius. 1979. Effect of acid pH on the absorption spectra and photoreactions of bacteriorhodopsin. Biochemistry. 18:4100-4107.
48. Oesterhelt, D., and L. Schuhmann. 1974. Reconstitution of bacteriorhodopsin. FEBS Lett. 44:262-265.
49. Oesterhelt, D., and W. Stoeckenius. 1971. Rhodopsin-like protein from the purple membrane of Halobacterium halobium. Nature (London), New Biol. 233:149-152.
50. Oesterhelt, D., and W. Stoeckenius. 1974. Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. Methods Enzymol. 31:667-678.
51. Oesterhelt, D., J. Tittor, and E. Bamberg. 1992. A unifying concept for ion translocation by retinal proteins. J. Bioenerg. Biomembr. 24:181-191.
52. Ohtani, H., T. Kobayashi, and J. Iwai. 1986. Picosecond and nanosecond spectroscopies of the photochemical cycles of acidified bacteriorhodopsin. Biochemistry. 25:3356-3363.
53. Pande, C., R. H. Callender, C. H. Chang, and T. G. Ebrey. 1986. Resonance Raman study of the pink membrane photochemically prepared from the deionized blue membrane of H. Halobium. Biophys. J. 50:545-549.
54. Popp, A., M. Wolperdinger, N. Hampp, C. Bräuchle, and D. Oesterhelt. 1993. Photochemical conversion of the O-intermediate to 9-cis-retinal-containing products in bacteriorhodopsin films. Biophys. J. 65: 1449-1459.
55. Qiao, Y., and D. Psaltis. 1992. Sampled dynamic holographic memory. Appl. Opt. 17:1376-1378.
56. Renk, G., P. Goletz, R. K. Crouch, C. Chung-Ho, R. Govindjee, and T. G. Ebrey. 1987. A spin-labeled analogue of purple and blue membrane. In Biophysical Studies of Retinal Proteins. University of Illinois Press. 80-85.
57. Renthal, R., and R. Regalado. 1991. Cooperativity of the dehydration blue-shift of bacteriorhodopsin. Photochem. Photobiol. 54:931-935.
58. Salem, S., and P. Bruckmann. 1975. Conversion of a photon to an electrical signal by sudden polarization in the n-retinylidene visual chromophore. Nature. 258:526-528.
59. Sampogna, R. V., and B. Honig. 1994. Environmental effects on the protonation states of active site residues in bacteriorhodopsin. Biophys. J. 66:1341-1352.
60. Song, L., M. A. El-Sayed, and J. K. Lanyi. 1993. Protein catalysis of the retinal subpicosecond photoisomerization in the primary process of bacteriorhodopsin photosynthesis. Science. 261:891-894.
61. Stewart, J. J. P. 1989. Optimization of parameters for semiempirical methods. J. Comput. Chem. 10:221-245.
62. Stoeckenius, W., and R. Bogomolni. 1982. Bacteriorhodopsin and related pigments of Halobacteria. Annu. Rev. Biochem. 52:587-616.
63. Stuart, J. A., B. W. Vought, C. F. Zhang, and R. R. Birge. 1995. The active site of bacteriorhodopsin. Two-photon spectroscopic evidence for a positively charged chromophore binding site mediated by calcium. Biospectroscopy. 1:9-28.
64. Tallent, J. R., E. Q. Hyde, L. A. Findsen, G. C. Fox, and R. R. Birge. 1992. Molecular dynamics of the primary photochemical event in rhodopsin. J. Am. Chem. Soc. 114:1581-1592.
65. Tallent, J., Q. W. Song, Z. Li, J. Stuart, and R. R. Birge. 1996. Effective photochromic nonlinearity of dried blue-membrane bacteriorhodopsin films. Optics Letters. 21:1339-1341.
66. Tittor, J., and D. Oesterhelt. 1990. The quantum yield of bacteriorhodopsin. FEBS Lett. 263:269-273.
67. Toth-Boconadi, R., S. G. Taneva, and L. Keszthelyi. 1989. Angle of retinal of bacteriorhodopsin in blue membrane. Biophys. J. 56:281-283.
68. Tributsch, H., and R. A. Bogomolni. 1994. Bacteriorhodopsin: a molecular photooscillator? Chem. Phys. Lett. 227:74-78.
69. Wu, S., and M. A. El-Sayed. 1994. Binding characteristics of an organometallic cation, Ru(bpy)3(2+), in regenerated bacteriorhodopsin. J. Phys. Chem. 98:7246-7251.
70. Zerner, M. C. 1990. Semiempirical molecular orbital methods. In Reviews in Computational Chemistry. VCH Publishers, New York. 313-365.
71. 2+ binding to deionized bacteriorhodopsin. Proc. Natl. Acad. Sci. USA. 90:1445-1449.
72. 2+-regenerated bacteriorhodopsin. Biophys. J. 61:1201-1206.