Differentiation of biologically distinct peanut stripe potyvirus strains by a nucleotide polymorphism-based assay

Plant Disease

Volumn 82, Issue 10, 1998, Pages 1121-1125

  Pappu, S S ^a   Pappu, H R ^a   Chang, C A ^b   Culbreath, A K ^a   Todd, J W ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b TAIWAN AGRICULTURAL RESEARCH INSTITUTE   (Taiwan)

Author keywords

Capsid gene sequence; Necrotic strains; RT PCR; Strain differentiation

Indexed keywords

AMINO ACID SEQUENCE; ASSAY; CLONED GENE; GENE SEQUENCING; GENETIC POLYMORPHISM; OLIGONUCLEOTIDE; PEANUT STRIPE POTYVIRUS; VIRAL GENETICS;

EID: 0031667921     PISSN: 01912917     EISSN: None     Source Type: Journal    
DOI: 10.1094/PDIS.1998.82.10.1121     Document Type: Article

References (21)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Benson, D. A., Boguski, M., Lipman, D. J., and Ostell, J. 1996. GenBank. Nucleic Acids Res. 24:1-5.
3. Cevik, B., Pappu, S. S., Pappu, H. R., Benscher, D., Irey, M., Lee, R. F, and Niblett, C. L. 1995. Application of bi-directional PCR to citrus tristeza virus: Detection and strain differentiation. Pages 17-24. In: Proc. XIII Conf. Int. Org. Citrus Virol. J. da Graca, P. Moreno, and R K Yokomi, eds. University of California, Riverside.
4. Chang, C. A., Purcifull, D. E., and Zettler, F. W. 1990. Comparison of two strains of peanut stripe virus in Taiwan. Plant Dis. 74:593-596.
5. Culver, J., and Sherwood, J. L. 1988. Detection of peanut stripe virus in peanut seed by an indirect enzyme-linked immunosorbent assay using a monoclonal antibody. Plant Dis. 72:676-679.
6. Demski, J. W., Reddy, D. V. R., Sowell, G., and Bays, D. 1984. Peanut stripe virus - a new seed-borne potyvirus from China infecting groundnut (Arachis hypogaea). Ann. Appl. Biol. 105:495-501.
7. Demski, J. W., Reddy, D. V. R., Wongkaew, S., Xu, Z. Y., Kuhn, C. W., Cassidy, B. G., Shukla, D. D., Saleh, N., Middleton, K. J., Sreenivasulu, P., Prasada Rao, R. D. V. J., Senboku, T., Dollet, M., and McDonald, D. 1993. Peanut stripe virus. Inf. Bull. No. 38, Peanut Collaborative Res. Support Prog. (Peanut CRSP) University of Georgia, Griffin 30223 and International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) Patancheru, Andhra Pradesh 502324, India.
8. Devereux, J., Haeberli, P., and Smithies, O. 1984. A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12:387-395.
9. Flasinski, S., Gunasinghe, U. B., Gonzales, R. A., and Cassidy, B. G. 1996. The cDNA sequence and infectious transcripts of peanut stripe virus. Gene 171:299-300.
10. Gunasinghe, U. B., Flasinski, S., Nelson, R. S., and Cassidy, B. G. 1994. Nucleotide sequence and genome organization of peanut stripe potyvirus. J. Gen. Virol. 75:2519-2526.
11. Hadidi, A., Levy, L., and Podleckis, E. V. 1995. Polymerase chain reaction technology in plant pathology. Pages 167-187 in: Molecular Methods in Plant Pathology. R. P. Singh and U. S. Singh, eds. CRC Press, Boca Raton, FL.
12. Lynch, R. E., Demski, J. W., Branch, W. D., Holbrook, C. C., and Morgan, L. W. 1988. Influence of peanut stripe virus on growth, yield, and quality of Florunner peanut. Peanut Sci. 15:47-52.
13. Omunyin, M. E., Hill, J. H., and Miller, W. A. 1996. Use of unique RNA sequence-specific oligonucleotide primers for RT-PCR to detect and differentiate soybean mosaic virus strains. Plant Dis. 80:1170-1174.
14. Pappu, S. S., Brand, R., Pappu, H. R., Rybicki, E. P., Gough, K. H., Frenkel, M. J., and Niblett, C. L. 1993. A polymerase chain reaction method adapted for selective amplification and cloning of 3′ sequences of potyviral genomes: Application to dasheen mosaic virus. J. Virol. Methods 41:9-20.
15. Pappu, H. R., Pappu, S. S., and Sreenivasulu, P. 1997. Molecular characterization and interviral homologies of a potyvirus infecting sesame (Sesamum indicum) in Georgia. Arch. Virol. 142:1919-1927.
16. Rhoads, D. D., and Roufa, D. S. 1985. Emetine resistance of Chinese hamster cells: structure of wild type and mutant ribosomal protein S14 messenger RNA species. Mol. Cell. Biol. 5:1655-1659.
17. Sambrook, J., Fritsch, E. F., and Maniatis, T. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, New York.
18. Sreenivasulu, P., Demski, J. W., Kuhn, C. W., and Christie, R. G. 1992. Characterization of a necrosis strain of peanut stripe virus infecting beggarweed and groundnut in Georgia. Int. Arachis Newsl. 11:21-23.
19. Teycheney, P. Y., Young, P., and Dietzen, R. G. 1994. Cloning and sequence analysis of the coat protein gene of an Australian strain of peanut mottle and an Indonesian "blotch" strain of peanut stripe potyviruses. Virus Res. 31:235-244.
20. Thompson, J. D., Higgins, D. G., and Gibson, T. J. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
21. Wongkaew, S., and Dollet, M. 1990. Comparison of peanut stripe virus isolates using symptomatology on particular hosts and serology. Oleagineux 45:267-278.