mRNA translation in yeast during entry into stationary phase

Molecular and General Genetics

Volumn 259, Issue 3, 1998, Pages 282-293

  Dickson, L M ^a   Brown, A J P ^a  

^a UNIVERSITY OF ABERDEEN   (United Kingdom)

Author keywords

Gene expression; mRNA translation; Stationary phase; Yeast

Indexed keywords

GLUCOSE; INITIATION FACTOR; MESSENGER RNA;

ARTICLE; FUNGUS GROWTH; NONHUMAN; POLYSOME; PRIORITY JOURNAL; RNA TRANSLATION; SACCHAROMYCES CEREVISIAE; YEAST;

ARTIFICIAL GENE FUSION; BASE SEQUENCE; DNA PRIMERS; DNA, FUNGAL; GENE EXPRESSION; INTERPHASE; MOLECULAR SEQUENCE DATA; PLASMIDS; POLYMERASE CHAIN REACTION; PROTEIN BIOSYNTHESIS; RNA, FUNGAL; RNA, MESSENGER; SACCHAROMYCES CEREVISIAE;

FUNGI; SACCHAROMYCES CEREVISIAE;

EID: 0031662828     PISSN: 00268925     EISSN: None     Source Type: Journal    
DOI: 10.1007/s004380050814     Document Type: Article

References (76)

1. Altmann M, Trachsel H (1993) Regulation of translation initiation and modulation of cellular physiology. Trends Biochem Sci 18:429-432
2. Borkovich KA, Farrelly FW, Finkelstein DB, Taulien J, Lindquist S (1989) Hsp82 is an essential protein that is required in higher concentrations for growth of cells at higher temperatures. Mol Cell Biol 9:3919-3930
3. Bossier P, Fitch IT, Boucherie H, Tuite MF (1989) Structure and expression of yeast gene encoding the small heat shock protein Hsp26. Gene 78: 323-330
4. Boucherie H (1985) Protein synthesis during transition and stationary phases under glucose limitation in Saccharomyces cerevisiae. J Bacteriol 161:385-392
5. Boy-Marcotte E, Tadi D, Perrot M, Boucherie H, Jacquet M (1996) High cAMP levels antagonise the reprogramming of gene expression that occurs at the diauxic shipt in Saccharomyces cerevisiae. Microbiology 142:459-467
6. Brevario D, Hinnehusch, AG, Dhar R (1988) Multiple regulatory mechanisms control the expression of the RAS1 and RAS2 genes of Saccharomyces cerevisiae. EMBO J 7:1805-1813
7. Brown AJP (1995) Preparation of total RNA. In: Evans I (ed) Methods in yeast molecular biology. Humana Press, Totowa, New Jersey, pp 269-276
8. Burke RL, Tekamp-Olson P, Najarian R (1983) The isolation, characterization and sequence of the pyruvate kinase gene of Saccharomyces cerevisiae. J Biol Chem 258:2193-2201
9. Cannon JF, Tatchell K (1987) Characterization of Saccharomyces cerevisiae genes encoding subunits of cyclic AMP-dependent protein kinase. Mol Cell Biol 7:2653-2663
10. Casabadan MJ, Martines-Azarias A, Shapira K, Chou J (1983) β-Galactosidase gene fusions for analysing gene expression in Escherichia coli and yeast. Methods Enzymol 100:293-308
11. Choder M (1991) A general topoisomerase I-dependent transcriptional repression in the stationary phase of yeast. Genes Dev 5:2315-2326
12. Choder M (1993) A growth-limiting process in the last growth phase of the yeast life cycle involves RPB4, a subunit of RNA polymerase II. J Bacteriol 175:6358-6363
13. Cigan AM, Donahue TF (1987) Sequence and structural features associated with translational initiator regions in yeast - a review. Gene 59:1-18
14. De Haro C, Mendez R, Santoyo J (1996) The eIF-2α kinases and the control of protein synthesis. FASEB J 10:1378-1387
15. DeNoble JG, Klis FM, Priem J, Munnik T, van den Ende H (1990) The glucanase-soluble mannoproteins limit cell wall porosity in Saccharomyces cerevisiae. Yeast 6:491-499
16. Desfarges L, Durrens P, Juguelin H, Cassagne C, Bonneu M, Aigle M (1993) Yeast mutants affected in viability upon starvation have a modified phospholipid composition. Yeast 9:267-277
17. Duncan RF (1996) Translational control during heat shock. In: Hershey JWB, Mathews MB, Sonenberg N (eds) Translational control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 271-293
18. Feinberg AP, Vogelstein B (1983) A technique for radiolabelling DNA restriction endonuclease fragments to high specific activity. Anal Biochem 134:494-498
19. Fuge EK, Braun BL, Werner-Washburne M (1994) Protein synthesis in long-term stationary-phase cultures of Saccharomyces cerevisiae. J Bacteriol 176:5802-5813
20. Godefroy-Colburn T, Thach RE (1981) The role of mRNA competition in regulating translation: IV. kinetic model. J Biol Chem 256:11762-11773
21. Guarente L, Mason T (1983) Heme regulates transcription of the CYC1 gene of S. cerevisiae via an upstream activation site. Cell 32:1279-1286
22. Herson D, Schmidt A, Seal S, Marcus A, van Vloten-Doting L (1979) Competitive mRNA translation in an in vitro system from wheat germ. J Biol Chem 254:8245-8249
23. Hinnehusch AG (1994) Translational control of GCN4: an in vivo barometer of initiation factor activity. Trends Biochem Sci 19:409-414
24. Ito H, Fukada Y, Murata K, Kimura A (1983) Transformation of intact yeast cells treated with alkili cations. J Bacteriol 153:163-168
25. Jamieson DJ (1992) Saccharomyces cerevisiae has distinct adaptive responses to both hydrogen peroxide and menadione. J Bacteriol 174:6678-6681
26. Ju Q, Warner JR (1994) Ribosome synthesis during the growth cycle of Saccharomyces cerevisiae. Yeast 10:151-157
27. Kaback, DB, Feldberg LR (1985) Saccharomyces cerevisiae exhibits a sporulation-specific temporal pattern of transcript accumulation. Mol Cell Biol 5:751-761
28. Kataoka T, Powers S, McGill C, Fasano O, Strathern J, Broach J, Wigler M (1984) Genetic analysis of yeast RAS1 and RAS2 genes. Cell 37:437-445
29. Kozak M (1988) Leader length and secondary structural modulate mRNA function under conditions of stress. Mol Cell Biol 8:2737-2744
30. Kozak M (1989)The scanning model for translation: an update. J Cell Biol 108:229-241
31. Kozak M (1991) Structural features in eukaryotic mRNAs that modulate the initiation of translation. J Biol Chem 266:19867-19870
32. Lacmmli UK (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227:680-685
33. Lehrach H, Diamond D, Wozney JM, Boedtker H (1977) RNA molecular weight determinations by gel electrophoresis under denaturing conditions, a critcal reexamination. Biochemistry 16:4743-4751
34. Lewis JG, Northcott CJ, Learmonth RP, Attfield PV, Watson K (1993) The need for consistent nomenclature and assessment of growth phases in diauxic cultures of Saccharomyces cerevisiae. J Gen Microbiol 139:835-839
35. Lillihaug JR, Kleppe K (1975) Effects of salts and polyamines on T4 polynucleotide kinase. Biochemistry 14:1225-1230
36. Lindquist S (1981) Regulation of protein synthesis during heat shock. Nature 293:311-314
37. Lodish HF (1974) Model for the regulation of mRNA translation applied to haemoglobin synthesis. Nature 251:385-388
38. Mager WH, De Kruijff AJJ (1995) Stress-induced transcriptional activation. Microbiol Rev 59:506-531
39. McGraw P, Henry SA (1989) Mutations in the Saccharomyces cerevisiae opi3 gene: effects on phospholipid methylation, growth, and cross-pathway regulation of inositol synthesis. Genetics 122:317-330
40. Mellor J, Dobson MJ, Roberts NA, Tuite MF, Emtage JS, White S, Lowe PA, Patel T, Kingsman AJ, Kingsman SM (1983) Efficient synthesis of enzymatically active calf chymosin in Saccharomyces cerevisiae. Gene 24:1-14
41. Merrick WC, Hershey JWB (1996) The pathway and mechanism of eukaryotic protein synthesis. In: Hershey JWB, Mathews MB, Sonenberg N (eds) Translational control. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York, pp 31-69
42. Moore PA (1991) Glycolytic gene expression in Saccharomyces cerevisiae. PhD thesis, University of Glasgow, U. K.
43. Moore PA, Sagliocco FA, Wood RMC, Brown AJP (1991) Yeast glycolytic genes are differentially regulated. Mol Cell Biol 11:5330-5337
44. Mountain HA, Sudbery PE (1990) Regulation of the Saccharomyces cerevisiae WHI2 gene. J Gen Microbiol 136:727-732
45. Panek AD (1991) Storage carbohydrates. In: Rose AH, Harrison JS (eds) The Yeasts, vol. 1. Academic Press, London, pp 655-678
46. Phillips S, Tse C, Serventi I, Hynes N (1979) Structure of the polyadenylie acid in the rihonucleic acid of Succharomyces cerevisiae. J Bacteriol 138:542-551
47. 0 form. Chromosoma 67:263-274
48. Praekelt UM, Meacock PA (1990) HSP12, a new small heat shock gene of Saccharomyces cerevisiae: analysis of structure, regulation and function. Mol Gen Genet 223:97-106
49. Praekelt UM, Byrne KL, Meacock PA (1994) Regulation of THI4 (MOL1), a thiamine-biosynthetic gene of Saccharomyces cerevisiae. Yeast 10: 481-490.
50. Pringle JR, Hartwell LH (1981) The Saccharomyces cell cycle. In: Broach J, Strathern J, Jones E (eds) Molecular biology of the yeast Saccharomyces: life cycle and inheritance. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, New York pp 97-142
51. Ray BK, Brendler TG, Adya S, Daniels-McQueen S, Miller JK, Hershey JWB, Grifo, JA, Merrick WC, Thach RE (1983) Role of mRNA competition in regulating translation: further characterization of mRNA discriminatory initiation factors. Proc Natl Acad Sci USA 80:663-667
52. Rhoads RE (1993) Regulation of eukaryotic protein synthesis by intiation factors. J Biol Chem 268:3017-3020
53. Rose M, Botstein D (1983) Construction and use of lacZ (β-galactosidase) gene fusions which are expressed in yeast. Methods Enzymol 101:167-180
54. Rosen H, Di Segni G, Kaempfer R (1982) Translational control by messenger RNA competition for eukaryotic initiation factor 2. J Biol Chem 257: 946-952
55. Russell M, Bradshaw-Rouse J, Markwardt D, Heideman W (1993) Changes in gene expression in the Ras/adenylate cyclase system of S. cerevisiae: correlation with cAMP levels and growth. Mol Biol Cell 4:757-765
56. Sachs, AB, Sarnow P, Hentze MW (1997) Starting at the beginning, middle, and end: translation initiation in eukaryotes. Cell 89:831-838
57. Sagliocco FA, Vega Laso MR, Zhu D, Tuite MF, McCarthy JEG, Brown AJP (1993) The influence of 5′-secondary structure upon ribosome binding to mRNA during translation in yeast. J Biol Chem 268:26522-26530
58. Sambrook JF, Fritsch EF, Maniatis T (1989) Molecualr Cloning: A Laboratory Manual. (2nd edn). Cold Spring Harbor Laboratory Press, Cold Spring Harbour, New York
59. Sanchez Y, Lindquist S (1990) HSP104 required for induced thermotolerance. Science 248:1112-1115
60. Sanchez Y, Taulien J, Borkovich KA, Lindquist S (1992) Hsp104 is required for tolerance to many forms of stress. EMBO J 11:2357-2364
61. Sanger F, Nicklen S, Coulson AR (1977) DNA sequencing with chain-terminating inhibitors. Proc Natl Acad Sci USA 74:5463-5467
62. Santiago TC, Bettany AJE, Purvis IJ, Brown AJP (1987) mRNA stability in Saccharomyces cerevisiae: the influence of translation and poly(A) tail length. Nucleic Acids Res 15:2417-2429
63. Sogin SJ, Saunders, CA (1980) Fluctuation in polyadenylate size and content in exponential and stationary-phase cells of Saccharomyces cerevisiae. J Bacteriol 144:74-81
64. Thevelein JM (1984) Regulation of trehalose mobilization in fungi. Microbiol Rev 48:42-59
65. Thomas PS (1980) Hybridization of denatured RNA and small DNA fragments transferred to nitrocellulose. Proc Natl Acad Sci USA 77:5201-5205
66. Thompson-Jaeger S, Francois J, Gaughran JP, Tatchell K (1991) Deletion of SNF1 affects the nutrient response of yeast and resembles mutations which activate the adenylate cyclase pathway. Genetics 129:697-706
67. Tzamarias D, Roussou, I, Thireos, G (1989) Coupling of GCN4 mRNA translational activation with decreased rates of polypeptide chain initiation. Cell 57:947-954
68. Vasilescu S, Ptushkina M, Linz B, Muller PP, McCarthy JEG (1996) Mutants of eukaryotic initiation factor eIF-4 E with altered mRNA cap binding specificity reprogram mRNA se-lection by ribosomes in Saccharomyces cerevisiae. J Biol Chem 271:7030-7037
69. Vega Laso MR, Zhu D, Sagliocco F, Brown AJP, Tuite MF, McCarthy JEG (1993) Inhibition of translational initiation in the yeast Saccharomyces cerevisiae as a function of the stability and position of hairpin structures in the mRNA leader. J Biol Chem 268:6453-6462
70. Walden WE, Godefroy-Colburn T, Thach RE (1981) The role of mRNA competition in regulating translation: I. demonstration of competition in vivo. J Biol Chem 256:11739-11746
71. Werner-Washburne, M, Becker, J, Kosic-Smithers J, and Craig EA (1989) Yeast Hsp70 RNA levels vary in response to the physiological status of the cell. J Bacteriol 171:2680-2688
72. Werner-Washburne, M, Braun E, Johnston GC, Singer RA (1993) Stationary phase in the yeast Saccharomyces cerevisiae. Microbiol Rev 57:383-401
73. Werner-Washburne, M, Braun EL, Crawford, ME, Peck VM (1996) Stationary phase in Saccharomyces cerevisiae. Mol Microbiol 19:1159-1166
74. Wheals AE (1987) Biology of the cell cycle in yeasts. In Rose AH, Harrison JS (eds) The Yeasts, vol. 1. Academic Press, London, pp 283-390
75. Wood RMC (1994) Translational regulation of gene expression in Saccharomyces cerevisiae. PhD thesis, University of Aberdeen, UK
76. Young, RA, Davis, RW (1983) Efficient isolation of genes by using antibody probes. Proc Natl Acad Sci USA 80:1194-1198