Practical aspects of multiple sequence alignment

Methods of Biochemical Analysis

Volumn 39, Issue , 1998, Pages 172-188

  Baxevanis, Andreas D ^a  

^a NATIONAL HUMAN GENOME RESEARCH INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

ALGORITHM; AMINO ACID SEQUENCE; ANIMAL; ARTICLE; BIOLOGY; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER PROGRAM; FACTUAL DATABASE; GENETICS; HUMAN; METHODOLOGY; MOLECULAR GENETICS; PROTEIN CONFORMATION; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY;

ALGORITHMS; AMINO ACID SEQUENCE; ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, FACTUAL; HUMANS; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; PROTEIN CONFORMATION; PROTEINS; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SOFTWARE;

EID: 0031626671     PISSN: 00766941     EISSN: None     Source Type: Book Series    
DOI: None     Document Type: Article

References (11)

1. Bairoch, A. (1997). The PROSITE database: Its staus in 1997. Nucl. Acids Res. 25, 217-221.
2. Barton, G. (1993). ALSCRIPT, a tool to format multiple sequence alignment. Protein Eng. 6, 37-40.
3. Corpet, F. (1988). Multiple sequence alignment with hierarchical clustering. Nucl. Acids Res. 16, 10881-10890.
4. Gribskov, M., McLachlan, A., and Eisenberg, D. (1987). Profile analysis: Detection of distantly-related proteins. Proc. Natl. Acad. Sci. U.S.A. 84, 4355-4358.
5. Gribskov, M., Homyak, M., Edenfield, J., and Eisenberg, D. (1988). Profile scanning for three-dimensional structural patterns in protein sequences. Comput. Appl. Biosci. 4, 61-66.
6. Henikoff, J. G., and Henikoff, S. (1996). BLOCKS database and its applications. Methods Enzymol. 266, 88-105.
7. Higgins, D. G., Thompson, J. D., and Gibson, T. J. (1996). Using CLUSTAL for multiple sequence alignments. Methods Enzymol. 266, 383-402.
8. Lüthy, R., Xenarios, I., and Bucher, P. (1994). Improving the sensitivity of the sequence profile method. Protein Sci. 3, 139-146.
9. Neuwald, A. F., Liu, J. S., Lipman, D. J., and Lawrence, C. E. (1997). Extracting protein alignment models from the sequence database. Nucl. Acids Res. 25, 1665-1677.
10. Sankoff, D. (1975). SIAM J. Appl. Math. 78, 35.
11. Tatusov, R., Altschul, S., and Koonin, E. (1994). Detection of conserved segments in proteins: Iterative scanning of sequence databases with alignment blocks. Proc. Natl. Acad. Sci. U.S.A. 91, 12091-12095.