In vivo relations between pAMβ1-encoded type I topoisomerase and plasmid replication

Molecular Microbiology

Volumn 28, Issue 5, 1998, Pages 1005-1016

  Bidnenko, V ^a   Ehrlich, S D ^a   Janniere L ^a  

^a CEMAGREF   (France)

Author keywords

[No Author keywords available]

Indexed keywords

DNA TOPOISOMERASE; BACTERIAL DNA;

ARTICLE; BACILLUS SUBTILIS; DNA REPLICATION; ENZYME ACTIVITY; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; NUCLEOTIDE SEQUENCE; PLASMID; PRIORITY JOURNAL; PROTEIN DNA BINDING; GENETICS; METABOLISM; MOLECULAR GENETICS;

BACILLUS SUBTILIS; POSIBACTERIA; PROKARYOTA;

BACILLUS SUBTILIS; BASE SEQUENCE; DNA REPLICATION; DNA TOPOISOMERASES, TYPE I; DNA, BACTERIAL; MOLECULAR SEQUENCE DATA; PLASMIDS;

EID: 0031596494     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.1998.00862.x     Document Type: Article

References (48)

1. Aleixandre, V., and Blanco, M. (1987) Heterogeneity in the level of ampicillin resistance conferred by pBR322 derivatives with different DNA supercoiling. Mol Gen Genet 209: 56-60.
2. Backman, K., Betlach, M., Boyer, H.W., and Yanofsky, S. (1978) Genetic and physical studies on the replication of ColE1-type plasmids. Cold Spring Harbor Symp Quant Biol 43: 69-76.
3. Bruand, C., Ehrlich, S.D., and Jannière, L. (1991) Unidirectional theta replication of the structurally stable Enterococcus faecalis plasmid pAMβ1. EMBO J 10: 2171-2177.
4. Bruand, C., Ehrlich, S.D., and Jannière, L. (1995) Primosome assembly site in Bacillus subtilis. EMBO J 14: 2642-2650.
5. Bruand, C., Le Chatelier, E., Ehrlich, S.D., and Jannière, L. (1993) A fourth class of theta-replicating plasmids: the pAMβ1 family from Gram-positive bacteria. Proc Natl Acad Sci USA 90: 11668-11672.
6. Ceglowski, P., Boitsov, A., Chai, S., and Alonso, J.C. (1993) Analysis of the stabilization system of pSM19035-derived plasmid pBT233 in Bacillus subtilis. Gene 136: 1-12.
7. Chang, A.C.Y., and Cohen, S.N. (1978) Construction and characterization of amplifiable multicopy DNA cloning vehicles derived from the p15A cryptic miniplasmid. J Bacteriol 134: 1141-1156.
8. Confalonieri, F., Elie, C., Nadal, M., Bouthier de La Tour, C., Forterre, P., and Duguet, M. (1993) Reverse gyrase: a helicase-like domain and a type I topoisomerase in the same polypeptide. Proc Natl Acad Sci USA 90: 4753-4757.
9. DiGate, R.J., and Marians, K.J. (1988) Identification of a potent decatenating enzyme from Escherichia coli. J Biol Chem 263: 13366-13373.
10. Firth, N., Ridgway, K.P., Byrne, M.E., Fink, P.D., Johnson, L.K., Paulsen, I.T., and Skurray, R.A. (1993) Analysis of a transfer region from the staphylococcal conjugative plasmid pSK41. Gene 136: 13-25.
11. Fouet, A., Sirard, J.-C., and Mock, M. (1994) Bacillus anthracis pXO1 virulence plasmid encodes a type 1 DNA topoisomerase. Mol Microbiol 11: 471-479.
12. Gangloff, S., McDonald, J.P., Bendixen, C., Arthur, L., and Rothstein, R. (1994) The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase. Mol Cell Biol 14: 8391-8398.
13. Goldstein, E., and Drlica, K. (1984) Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature. Proc Natl Acad Sci USA 81: 4046-4050.
14. Gryczan, T., Contente, S., and Dubnau, D. (1978) Characterization of Staphylococcus aureus plasmids introduced by transformation into Bacillus subtilis. J Bacteriol 134: 318-329.
15. Guerry, P., LeBlanc, D.J., and Falkow, S. (1973) General method for the isolation of plasmid deoxyribonucleic acid. J Bacteriol 116: 1064-1066.
16. Hiasa, H., DiGate, R.J., and Marians, K.J. (1994) Decatenating activity of Escherichia coli DNA gyrase and topoisomerases I and III during oriC and pBR322 DNA replication in vitro. J Biol Chem 269: 2093-2099.
17. Hsieh, T. (1993) DNA topoisomersases. In Nucleases. Linn, S.M., Lloyd, R.S., and Roberts, R.J. (eds.). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 209-234.
18. Imanaka, T., Ano, T., Fujii, M., and Aiba, S. (1984) Two replication determinants of an antibiotic-resistance plasmid, pTB19, from a thermophilic Bacillus. J Gen Microbiol 130: 1399-1408.
19. Itoh, T., and Tomizawa, J. (1978) Initiation of replication of plasmid ColE1 DNA by RNA polymerase, ribonuclease H and DNA polymerase I. Cold Spring Harbor Symp Quant Biol 43: 409-417.
20. Jannière, L., Bruand, C., and Ehrlich, S.D. (1990) Structurally stable Bacillus subtilis cloning vectors. Gene 87: 53-61.
21. Jannière, L., Bidnenko, V., McGovern, S., Ehrlich, S.D., and Petit, M.A. (1997) Replication terminus for DNA polymerase I during initiation of pAMβ1 replication: role of the plasmid-encoded resolution system. Mol Microbiol 23: 525-535.
22. Kato, J., Suzuki, H., and Ikeda, H. (1992) Purification and characterization of DNA topoisomerase IV in Escherichia coli. J Biol Chem 267: 25676-25684.
23. Kirkegaard, K., and Wang, J.C. (1985) Bacterial DNA topoisomerase I can relax positively supercoiled DNA containing a single-stranded loop. J Mol Biol 185: 625-637.
24. Kirkegaard, K., Pflugfelder, G., and Wang, J.C. (1984) The cleavage of DNA by type-I DNA topoisomerases. Cold Spring Harbor Symp Quant Biol 49: 411-419.
25. Kim, R.A., and Wang, J.C. (1992) Identification of the yeast TOP3 gene product as a single strand-specific DNA topoisomerase. J Biol Chem 267: 17178-17185.
26. Koltner, R., and Helinski, D.R. (1978) Construction of R6K plasmid derivatives in vitro: characterization of the R6K replication region. Plasmid 1: 571-580.
27. Kreuzer, K.N., and Morrical, S.W. (1994) Initiation of DNA replication. In Molecular Biology of Bacteriophage T4. Karam, J.D. (editor-in-chief). Washington: American Society for Microbiology Press, pp. 28-42.
28. Lereclus, D., and Arantes, O. (1992) spbA locus ensures the segregational stability of pHT1030, a novel type of Gram-positive replicon. Mol Microbiol 6: 35-46.
29. Li, Z., Hiasa, H., Kumar, U., and DiGate, R.J. (1997) The traE gene of plasmid RP4 encodes a homologue of Escherichia coli DNA topoisomerase III. J Biol Chem 272: 19582-19587.
30. Lima, Ch., Wang, J.C., and Mondragon, A. (1994) Three-dimensional structure of the 67K N-terminal fragment of E. coli DNA topoisomerase I. Nature 367: 138-146.
31. Liu, L.F., and Wang, J.C. (1975) In vitro DNA synthesis on primed covalently closed double-stranded templates. I. Studies with Escherichia coli DNA polymerase I. In DNA synthesis and its Regulation. Goulian, M., Friedberg, E.C., and Bridges, B.A. (eds). Menlo Park, CA: WA Benjamin, pp. 38-62.
32. Liu, L.F., and Wang, J.C. (1987) Supercoiling of the DNA template during transcription. Proc Natl Acad Sci USA 84: 7024-7027.
33. Pansegrau, W., Lanka, E., Barth, P.T., Figurski, D.H., Guiney, D.G., Haas, D., et al. (1994) Complete nucleotide sequence of Birmingham IncPα Plasmids. Compilation and comparative analysis. J Mol Biol 239: 623-663.
34. Perego, M. (1993) Integrational vectors for genetic manipulation in Bacillus subtilis. In Bacillus subtilis and Other Gram Positive Bacteria: Biochemistry, Physiology and Molecular Genetics. Soneshein, A.L., Losick, R., and Hoch, J.A. (eds.). Washington: American Society for Microbiology Press, pp. 615-624.
35. Perego, M., Ferrari, E., Bassi, M.T., Galizzi, A., and Mazza, P. (1987) Molecular cloning of Bacillus subtilis genes involved in DNA metabolism. Mol Gen Genet 209: 8-14.
36. Pruss, G.J. (1985) DNA topoisomerase mutants: increased heterogeneity in linking number and other replicon-dependent changes in DNA supercoiling. J Mol Biol 185: 51-63.
37. te Riele, H., Michel, B., and Ehrlich, S.D. (1986) Single-stranded plasmid DNA in Bacillus subtilis and Escherichia coli. Proc Natl Acad Sci USA 83: 2541-2545.
38. Sambrook, J., Fritsch, E.F., and Maniatis, T. (1989) Molecular Cloning: A Laboratory Manual. 2nd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press.
39. Simon, D., and Chopin, A. (1988) Construction of a vector plasmid family and its use for molecular cloning in Streptococcus lactis. Biochimie 70: 559-566.
40. Stragier, P., Bonamy, C., and Karmazin-Campelli, C. (1988) Processing of a sporulation sigma factor in Bacillus subtilis: how morphological structure could control gene expression. Cell 52: 697-704.
41. Swinfield, T.-J., Oultram, J.D., Thompson, D.E., Brehm, J.K., and Minton, N.P. (1990) Physical characterisation of the replication region of the Streptococcus faecalis plasmid pAMβ1. Gene 87: 79-90.
42. Swinfield, T.-J., Jannière, L., Ehrlich, S.D., and Minton, N.P. (1991) Characterization of a region of the Enterococcus faecalis plasmid pAMβ1 which enhances the segregational stability of pAMβ1 -derived cloning vectors in Bacillus subtilis. Plasmid 26: 209-221.
43. Tse, Y.-C., and Wang, J.C. (1980) E. coli and M. luteus DNA topoisomerase I can catalyze catenation or decatenation of double-stranded DNA rings. Cell 22: 269-276.
44. Tse-Dinh, Y.-C., and Beran-Steed, R.K. (1988) Escherichia coli DNA topoisomerase I is a zinc metalloprotein with three repetitive zinc-binding domains. J Biol Chem 263: 15857-15859.
45. Wallis, J.W., Chrebet, G., Brodsky, G., Rolfe, M., and Rothstein, R. (1989) A hyper-recombination mutation in S. cerevisiae identifies a novel eukaryotic topoisomerase. Cell 58: 409-419.
46. Wang, J.C. (1985) DNA topoisomerases. Ann Rev Biochem 54: 665-697.
47. Wang, J.C. (1991) DNA topoisomerases: why so many? J Biol Chem 266: 6659-6662.
48. Wang, J.C., and Liu, L.F. (1990) DNA replication: topological aspects and the roles of DNA topoisomerases. In DNA Topology and its Biological Effects. Cozzarelli, N.R., and Wang, J.C. (eds.). Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, pp. 321-340.