The genome of the pseudo T-even bacteriophages, a diverge group that resembles T4

Journal of Molecular Biology

Volumn 267, Issue 2, 1997, Pages 237-249

  Monod, C ^a   Repoila, F ^a   Kutateladze, M ^a   Tetart F ^a   Krisch, H M ^a  

^a CNRS   (France)

Author keywords

Genome plasticity; Genome polymorphism; Myoviruses; Pseudo T even bacteriophages; T even bacteriophages

Indexed keywords

CAPSID PROTEIN; DNA TOPOISOMERASE; GENE PRODUCT; OXIDOREDUCTASE; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; RESTRICTION ENDONUCLEASE;

AMINO ACID SEQUENCE; ARTICLE; BACILLUS PHAGE; BACTERIOPHAGE T4; CONTROLLED STUDY; GENETIC POLYMORPHISM; GENOME; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE HOMOLOGY; SOUTHERN BLOTTING; VIRION;

MIRIDAE; UNIDENTIFIED BACTERIOPHAGE;

EID: 0031588902     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1996.0867     Document Type: Article

References (53)

1. Abremski K., Black L. W. The function of bacteriophage T4 internal protein I in a restrictive strain of Escherichia coli. Virology. 97:1979;439-447.
2. Ackermann H.-W., DuBow M. S. Viruses of Prokaryotes. 1987;CRC Press Inc. Boca Raton.
3. Ackermann H.-W., Kasatiya S. S., Kawata T., Koga T., Lee J. V., Mbiguino A., Newman F. S., Vieu J.-F., Zachary A. Classification of Vibrio bacteriophages. Intervirology. 22:1984;61-71.
4. Altschul S. F., Gish W., Miller W., Myers E. W., Lipman D. J. Basic local alignment search tool. J. Mol. Biol. 215:1990;403-410.
5. Baker J., Limberger R., Schneider S. J., Campbell A. New Biol. 3:1991;297-308.
6. Black L. W., Showe M. K., Steven A. C. Morphogenesis of the T4 head. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
7. Botstein D., Herskowitz I. Properties of hybrids between Salmonella phage P22 and coliphage lambda. Nature. 251:1974;584-589.
8. Bouet J. Y., Woszczyk J., Repoila F., François V., Louarn J.-M., Krisch H. M. Direct PCR sequencing of the ndd gene of bacteriophage T4: identification of a product involved in bacterial nucleoid disruption. Gene. 141:1994;9-16.
9. Campbell A. Calendar R. In The Bacteriophages. 1988;Plenum Press, New York and London.
10. Campbell A., Botstein D. Hendrix R. W., Roberts J. W., Stahl F. W., Weisberg R. A. Lambda II. 1983;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
11. Carlson K., Miller E. S. Experiments in T4 Genetics. Karam J. D. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
12. Carlson K., Raleigh E. A., Hattman S. Restriction and modification. Karam J. D. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
13. Casjens S., Hatfull G., Hendrix R. W. Evolution of dsDNA tailed-bacteriophage genomes. Semin. Virol. 3:1992;383-397.
14. Chow M. S., Rouf M. A. Isolation and partial characterization of two Aeromonas hydrophila bacteriophages. Appl. Environ. Microbiol. 45:1983;1670-1676.
15. Cohen S. S. Virus-induced Enzymes. 1968;Columbia University Press, New York.
16. Coombs D. H., Arisaka F. T4 tail structure and function. Karam J. D. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
17. Cowie D. B., Avery R. J., Champe S. P. DNA homology among the T-even bacteriophages. Virology. 45:1971;30-37.
18. Demerec M., Fano U. Bacteriophage-resistant mutants in Escherichia coli. Genetics. 30:1945;119-136.
19. Epstein R. H., Bolle A., Steinberg C., Kellenberger E., Boy de la Tour E., Chevalley R., Edgar R., Susman M., Denhardt C., Lielausis I. Physiological studies of conditional lethal mutants of bacteriophage T4D. Cold Spring Harbor Symp. Quant. Biol. 28:1963;375-392.
20. Gish W., States D. J. Identification of protein coding regions by database similarity search. Nature Genet. 3:1993;266-272.
21. Håggard-Ljungquist E., Halling C., Calendar R. DNA sequences of the tail fiber genes of bacteriophage P2: evidence for horizontal transfer of tail fiber genes among unrelated bacteriophages. J. Bacteriol. 174:1992;1462-1477.
22. Hendrix R. W., Duda R. L. Bacteriophage λPaPa: not the mother of all λ phages. Science. 258:1992;1145-1148.
23. Henning U., Hashemolhosseini S. Receptor recognition by T-even-type coliphages. Karam J. D. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
24. Highton P. J., Chang Y., Myers R. J. Evidence for the exchange of segments between genomes during the evolution of lambdoid bacteriophages. Mol. Microb. 4:1990;1329-1340.
25. Kchromov I. S., Sorotchkina V. V., Nigmatullin T. G., Tikchonenko T. I. A new nitrogen base 5-hydroxycytosine in phage N-17 DNA. FEBS Letters. 118:1980;51-54.
26. Kim J. S., Davidson N. Electron microscope heteroduplex studies of sequence relations of T2, T4 and T6 bacteriophage DNAs. Virology. 57:1974;93-111.
27. Kleckner N. Sequence analysis of Tn 10 insertions. Cell. 16:1979;711-720.
28. Krisch H. M., Allet B. Nucleotide sequences involved in bacteriophage T4 gene 32 translational self-regulation. Proc. Natl Acad. Sci. USA. 79:1982;4937-4941.
29. Krüger D. H., Bickle T. A. Bacteriophage survival: multiple mechanisms for avoiding the deoxyribonucleic acid restriction systems of their hosts. Micobiol. Rev. 47:1983;345-360.
30. Landy A., Hoess R. H., Bidwell K., Ross W. Site-specific recombination in bacteriophage lambda: structural features of recombining sites. Cold Spring Harbor Symp. Quant. Biol. 43:1978;1089-1097.
31. Liss A., Ackermann H.-W., Mayer L. W., Zierdt C. H. Tailed phages of Pseudomonas and related bacteria. Intervirology. 15:1981;71-81.
32. Loayza D., Carpousis A. J., Krisch H. M. Gene 32 transcription and mRNA processing in T4-related bacteriophages. Mol. Microbiol. 5:1991;715-725.
33. Maftahi, M. 1992, DEA thesis "Etude moléculaire comparative de 18 bacteriophages appartenant au morphospecies T-pair". Unité des Entérobactéries, U199 INSERM, Institut Pasteur, Paris, France.
34. Mathews C. K. An overview of the T4 Developmental Program. Karam J. D. Molecular Biology of Bacteriophage T4. 1994;American Society for Microbiology, Washington, DC.
35. Mathews C. K., Kutter E. M., Mosig G., Berget P. B. Editors of Bacteriophage T4. 1983;American Society for Microbiology, Washington, DC.
36. Mattson T., Van Houwe G., Bolle A., Selzer G., Epstein R. Genetic identification of cloned fragments of bacteriophage T4 DNA and complementation by some clones containing early T4 genes. Mol. Gen. Genet. 154:1977;319-326.
37. McPheeters D. S., Gosch G., Gold L. Nucleotide sequences of the bacteriophage T2 and T6 gene 32 mRNAs. Nucl. Acids Res. 16:1988;9341.
38. Parker M. L., Christensen A. C., Boosman A., Stockard J., Young E. T., Doermann A. H. Nucleotide sequence of bacteriophage T4 gene 23 and the amino acid sequence of its product. J. Mol. Biol. 180:1984;399-416.
39. Paterson W. D., Douglas R. L., Grinyer I., McDermott L. A. Isolation and preliminary characterization of some Aeromonas salmonicida bacteriophages. J. Fisheries Res. Board Canada. 26:1969;629-632.
40. Repoila F., Tétart F., Bouet J.-Y., Krisch H. M. Genomic polymorphism in the T-even bacteriophages. EMBO J. 13:1994;4181-4192.
41. Russell R. L., Huskey R. J. Partial exclusion between T-even bacteriophages: an incipient genetic isolation mechanism. Genetics. 78:1974;989-1014.
42. Sambrook J., Fritsch E. F., Maniatis T. Molecular Cloning: A Laboratory Manual. 1989;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
43. Sandmeier H. Acquisition and rearrangement of sequence motifs in the evolution of bacteriophage tail fibers. Mol. Microb. 12:1994;343-350.
44. Schägger H., von Jagow G. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal. Biochem. 166:1987;368-379.
45. Schwarz H., Riede I., Sonntag I., Henning U. Degrees of relatedness of T-even type E. coli phages using different or the same receptors and topology of serologically cross-reacting sites. EMBO J. 2:1983;375-380.
46. Sharma M., Ellis R. L., Hinton D. M. Identification of a family of bacteriophage T4 genes encoding proteins similar to those present in group I introns of fungi and phage. Proc. Natl Acad. Sci. USA. 89:1992;6658-6662.
47. Simon M. N., Davis R. W., Davidson N. Hershey A. D. Bacteriophage Lambda. 1971;Cold Spring Harbor Laboratory Press, Cold Spring Harbor.
48. Synder M., Wood W. B. Genetic definition of two functional elements in a bacteriophage T4 host-range "cassette" Genetics. 122:1989;471-479.
49. Tétart F., Repoila F., Monod C., Krisch H. M. Bacteriophage T4 host range is expanded by duplications of a small domain of the tail fiber adhesin. J. Mol. Biol. 258:1996;726-731.
50. Wais A. C., Goldberg E. B. Growth and transformation of phage T4 in E. coli B/4, Salmonella, Aerobacter, Proteus andSerratia. Virology. 39:1969;153-161.
51. Warren R. A. J. Modified bases in bacteriophage DNAs. Annu. Rev. Microbiol. 34:1980;137-158.
52. Zachary A. Isolation of bacteriophages of the marine bacterium Beneckea natriegens from coastal salt marches. Appl. Microbiol. 27:1974;980-982.
53. Zieg J., Simon M. Analysis of the nucleotide sequence of an invertible controlling element. Proc. Natl Acad. Sci. USA. 77:1980;4196-4200.