메뉴 건너뛰기




Volumn 184, Issue 4, 1997, Pages 451-469

A study of oligonucleotide occurrence distributions in DNA coding segments

Author keywords

[No Author keywords available]

Indexed keywords

DNA; OLIGONUCLEOTIDE;

EID: 0031581848     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1996.0284     Document Type: Article
Times cited : (2)

References (36)
  • 1
    • 0025297285 scopus 로고
    • Codon preferences in free-living microorganisms
    • ANDERSSON, G. E. & KURLAND, C. G. (1990). Codon preferences in free-living microorganisms. Microbiol. Rev., 54, 198-210.
    • (1990) Microbiol. Rev. , vol.54 , pp. 198-210
    • Andersson, G.E.1    Kurland, C.G.2
  • 2
    • 0026552754 scopus 로고
    • DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coft genome
    • BHAGWAT, A. S. & MCCLELLAND, M. (1992). DNA mismatch correction by Very Short Patch repair may have altered the abundance of oligonucleotides in the E. coft genome. Nucl. Acids Res., 20, 1663-1668.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 1663-1668
    • Bhagwat, A.S.1    Mcclelland, M.2
  • 3
    • 33847428786 scopus 로고
    • In: Entropy, Information and Evolution. Weber, B
    • Chicago: University of Chicago Press
    • BROOKS, R. D., GUMMING, D. D/ & LEBLOND, P. H. (1988). In: Entropy, Information and Evolution. (Weber, B. H., Depew, D. J. & Smith, J. D. eds), pp. 189-229. Chicago: University of Chicago Press.
    • (1988) H., Depew, D. J; Smith, J. D. Eds, Pp. , pp. 189-229
    • Brooks, R.D.1    Gumming, D.D.2    Leblond, P.H.3
  • 4
    • 0025286203 scopus 로고
    • The effect of context on synonymous codon usage in genes with low codon usage bias
    • BULMER, M. (1987). The effect of context on synonymous codon usage in genes with low codon usage bias. Nucl. Acids Res., 18, 2869-2873.
    • (1987) Nucl. Acids Res. , vol.18 , pp. 2869-2873
    • Bulmer, M.1
  • 5
    • 0026502711 scopus 로고
    • Over- Andunderrepresentation of short oligonucleotides in DNA sequences
    • BURGE, C., CAMPBELL, A. M. & KARLIN, S. (1992). Over- andunderrepresentation of short oligonucleotides in DNA sequences. Proc. Nail. Acad. Sci., 89, 1358-1362.
    • (1992) Proc. Nail. Acad. Sci. , vol.89 , pp. 1358-1362
    • Burge, C.1    Campbell, A.M.2    Karlin, S.3
  • 8
    • 0023045765 scopus 로고
    • Heuristic informational analysis of sequences
    • CLAVERIE, J. M. & BOUGUELERET, L. (1986). Heuristic informational analysis of sequences. Nucl. Acids Res., 14, 179-196.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 179-196
    • Claverie, J.M.1    Bougueleret, L.2
  • 9
    • 0027717155 scopus 로고
    • An improved method for detection of words with unusual occurrence frequency in nucleotide sequences
    • COLOSIMO, A., MORANTE, S., PARisi, V. & Rossi, G. C. (1993). An improved method for detection of words with unusual occurrence frequency in nucleotide sequences. J. theor. Biol., 165, 659-672.
    • (1993) J. Theor. Biol. , vol.165 , pp. 659-672
    • Colosimo, A.1    Morante, S.2    Parisi, V.3    Rossi, G.C.4
  • 11
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzas Rd
    • FLEISCHMANN, R. D. & ADAMS, H. D. (1995). Whole-genome random sequencing and assembly of Haemophilus influenzas Rd. Science, 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1    Adams, H.D.2
  • 13
    • 0025728069 scopus 로고
    • Palindromic units are part of a new bacterial interspersed mosaic element (BIME)
    • GILSON, E., SAURIN, W., PERRIN, D., BACHILLIER, S. (1991). Palindromic units are part of a new bacterial interspersed mosaic element (BIME). Nucl. Acids Res., 19, 1375-1383.
    • (1991) Nucl. Acids Res. , vol.19 , pp. 1375-1383
    • Gilson, E.1    Saurin, W.2    Perrin, D.3
  • 14
    • 0028854033 scopus 로고
    • Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-13 genome
    • GLÄSNER, W., MERKL, R., SCHELLENBERG, V. & FRITZ, H.-J. (1995). Substrate preferences of Vsr DNA mismatch endonuclease and their consequences for the evolution of the Escherichia coli K-13 genome. J. Mol. Biol., 245, 1-7.
    • (1995) J. Mol. Biol. , vol.245 , pp. 1-7
    • Gläsner, W.1    Merkl, R.2    Schellenberg, V.3    Fritz, H.-J.4
  • 15
    • 0023372221 scopus 로고
    • Codon contexts in Enterobacterial and Coliphage genes
    • GOUY, M. (1987). Codon contexts in Enterobacterial and Coliphage genes. Mol. Biol. Evol., 4, 426-444.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 426-444
    • Gouy, M.1
  • 16
    • 0022118360 scopus 로고
    • ACNUC, a portable retrieval system for nucleic acid sequence databases: Logical and physical design and usage
    • GOUY, M., GAUTIER, C., ATTIMONELLI, M., LANAVE, C. & DI PAOLA, G. (1985). ACNUC, a portable retrieval system for nucleic acid sequence databases: logical and physical design and usage. Comput. Appl. Biosci., 1, 167-172.
    • (1985) Comput. Appl. Biosci. , vol.1 , pp. 167-172
    • Gouy, M.1    Gautier, C.2    Attimonelli, M.3    Lanave, C.4    Paola G, D.I.5
  • 17
    • 0028106987 scopus 로고
    • Compositional heteogeneity of the Escherichia coli genome: A role for VSP repair? J
    • GUTIERREZ, G., CASADESÚS, J., OLIVER, J. L. & MARTÍN, A. (1994). Compositional heteogeneity of the Escherichia coli genome: a role for VSP repair? J. Mol. Evol., 39, 340-346.
    • (1994) Mol. Evol. , vol.39 , pp. 340-346
    • Gutierrez, G.1    Casadesús, J.2    Oliver, J.L.3    Martín, A.4
  • 21
    • 0021687639 scopus 로고
    • Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch repair system in E. coli
    • KRAMER, B., KRAMER, W.& FRITZ, H.-J. (1984). Different base/base mismatches are corrected with different efficiencies by the methyl-directed DNA mismatch repair system in E. coli. Cell, 38, 879-887.
    • (1984) Cell , vol.38 , pp. 879-887
    • Kramer, B.1    Kramer, W.2    Fritz, H.-J.3
  • 23
    • 0025754787 scopus 로고
    • Spontaneous mutation at a 5-methylcytosine hotspot is prevented by very short patch (VSP) mismatch repair
    • LIEB, M. (1991). Spontaneous mutation at a 5-methylcytosine hotspot is prevented by very short patch (VSP) mismatch repair. Genetics, 28, 23-27.
    • (1991) Genetics , vol.28 , pp. 23-27
    • Lieb, M.1
  • 24
    • 0026710382 scopus 로고
    • Short, interspersed repetitive DNA sequences in Prokaryotic Genomes
    • LUPSKI, J. R. & WEINSTOCK, G. M. (1992). Short, interspersed repetitive DNA sequences in Prokaryotic Genomes. J. Bacterial., 174, 4525-4529.
    • (1992) J. Bacterial. , vol.174 , pp. 4525-4529
    • Lupski, J.R.1    Weinstock, G.M.2
  • 26
    • 0027237202 scopus 로고
    • Characterization of an IS-like element from Mycobacterium tuberculosis
    • MARIANI, F., PICCOLELLA, E., COLIZZI, V., RAPPUOLI, R. & GROSS, R. (1993). Characterization of an IS-like element from Mycobacterium tuberculosis. J. Gen. Microbiol., 139, 1767-1772.
    • (1993) J. Gen. Microbiol. , vol.139 , pp. 1767-1772
    • Mariani, F.1    Piccolella, E.2    Colizzi, V.3    Rappuoli, R.4    Gross, R.5
  • 27
    • 0026538522 scopus 로고
    • Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra and pentanucleotide sequences related to VSP DNA mismatch repair
    • MERKL, P., KROGER, M., RICE, P. & FRITZ, H.-J. (1992). Statistical evaluation and biological interpretation of non-random abundance in the E. coli K-12 genome of tetra and pentanucleotide sequences related to VSP DNA mismatch repair. Nucl. Acids Res., 20, 1657-1662.
    • (1992) Nucl. Acids Res. , vol.20 , pp. 1657-1662
    • Merkl, P.1    Kroger, M.2    Rice, P.3    Fritz, H.-J.4
  • 29
    • 0028055018 scopus 로고
    • The winds of (evolutionary) change: Breathing new life into microbiology
    • OLSEN, G. J., WOESE, C. R. & OVERBEEK, R. (1994). The winds of (evolutionary) change: breathing new life into microbiology. J. Bacterial. 176, 1-6.
    • (1994) J. Bacterial. , vol.176 , pp. 1-6
    • Olsen, G.J.1    Woese, C.R.2    Overbeek, R.3
  • 30
    • 33646939196 scopus 로고
    • Probability, Random Variables and Stochastic Processes. 3rd Edn
    • PAPOULIS, A. (1991). Probability, Random Variables and Stochastic Processes. 3rd Edn. New York: McGraw Hill.
    • (1991) New York: McGraw Hill.
    • Papoulis, A.1
  • 31
    • 0023664154 scopus 로고
    • Mono-through hexanucleotide composition of the Escherichia coli genome: A Markov chain analysis
    • PHILLIPS, G. J., ARNOLD, J. & IVARIE, R. (1987). Mono-through hexanucleotide composition of the Escherichia coli genome: a Markov chain analysis. Nucl. Adds Res., 15, 2611-2626.
    • (1987) Nucl. Adds Res. , vol.15 , pp. 2611-2626
    • Phillips, G.J.1    Arnold, J.2    Ivarie, R.3
  • 32
    • 0025376018 scopus 로고
    • Detection of latent sequence periodicities
    • PIZZI, E., LUINI, S. & FRONTALI, C. (1990). Detection of latent sequence periodicities. Nucl. Acids Res., 18, 3745-3752.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 3745-3752
    • Pizzi, E.1    Luini, S.2    Frontali, C.3
  • 33
    • 0023652058 scopus 로고
    • Synonymous codon usage in Bacillus sublilis reflects both translational selection and mutational biases
    • SHIELDS, D. C. & SHARP, P. M. (1987). Synonymous codon usage in Bacillus sublilis reflects both translational selection and mutational biases. Nucl. Acids Res., 15, 8023-8040.
    • (1987) Nucl. Acids Res. , vol.15 , pp. 8023-8040
    • Shields, D.C.1    Sharp, P.M.2
  • 34
    • 0024976038 scopus 로고
    • Calculating higher order DNA sequence information measures
    • SIBBALD, P. R., BANERJEE, S. & MAZE, J. (1989). Calculating higher order DNA sequence information measures. J. theor. Biol., 136, 475-483.
    • (1989) J. Theor. Biol. , vol.136 , pp. 475-483
    • Sibbald, P.R.1    Banerjee, S.2    Maze, J.3
  • 36
    • 0023359283 scopus 로고
    • DNA mismatch-repair in Escherlchla coll counteracting the hydrolytic deamination of 5-methyl-cytosine residues
    • ZELL, R. & FRITZ, H.-J. (1987). DNA mismatch-repair in Escherlchla coll counteracting the hydrolytic deamination of 5-methyl-cytosine residues. EMBO J., 6, 1809-1815.
    • (1987) EMBO J. , vol.6 , pp. 1809-1815
    • Zell, R.1    Fritz, H.-J.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.