DNA replication of wheat dwarf geminivirus vectors: Effects of origin structure and size

Virology

Volumn 227, Issue 2, 1997, Pages 389-399

  Suárez López, Paula ^a,b   Gutiérrez, Crisanto ^a  

^a UNIVERSIDAD AUTÓNOMA DE MADRID   (Spain)

^b JOHN INNES CENTRE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CONTROLLED STUDY; DNA REPLICATION; DNA REPLICATION ORIGIN; GEMINIVIRUS; NONHUMAN; PLANT VIRUS; PLASMID; PRIORITY JOURNAL; VIRUS REPLICATION; WHEAT;

DNA VIRUSES; GEMINIVIRIDAE; TRITICUM AESTIVUM; WHEAT DWARF VIRUS;

EID: 0031579237     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.8353     Document Type: Article

References (62)

1. Brewer, B. J., and Fangman, W. L. (1987). The localization of replication origins on ARS plasmids in S. cerevisiae. Cell 51, 463-471.
2. Brewer, B. J., and Fangman, W. L. (1994). Initiation preference at a yeast origin of replication. Proc. Natl. Acad. Sci. USA 91, 3418-3422.
3. Brough, C. L., Sunter G., Gardiner, W. E., and Bisaro, D. M. (1992). Kinetics of tomato golden mosaic virus DNA replication and coat protein promoter activity in Nicotiana tabacum protoplasts. Virology 187, 1-9.
4. Collin, S., Fernández-Lobato, M., Gooding, P. S., Mullineaux, P. M., and Fenoll, C. (1996). The two nonstructural proteins from wheat dwarf virus involved in viral gene expression and replication are retinoblastoma-binding proteins. Virology 219, 324-329.
5. Davies, J. W., and Stanley, J. (1989). Geminivirus genes and vectors. Trends Genet. 5, 77-81.
6. Desbiez, C., David, C., Mettouchi, A., Laufs, J., and Gronenborn, B. (1995). Rep protein of tomato yellow leaf curl geminivirus has an ATPase activity required for viral DNA replication. Proc. Natl. Acad. Sci. USA 92, 5640-5644.
7. Elmer, J. S., Sunter, G., Gardiner, W. E., Brand, L., Browning, C. K., Bisaro, D. M., and Rogers, S. G. (1988). Agrobacterium-mediated inoculation of plants with tomato golden mosaic virus DNAs. Plant Mol. Biol. 10, 225-234.
8. Etessami, P., Watts, J., and Stanley, J. (1989). Size reversion of African cassava mosaic virus coat protein gene deletion mutants during infection of Nicotiana benthamiana. J. Gen. Virol. 70, 277-289.
9. Fontes, E. P. B., Luckow, V. A., and Hanley-Bowdoin, L. (1992). A geminivirus replication protein is a sequence-specific DNA binding protein. Plant Cell 4, 597-608.
10. Fontes, E. P. B., Eagle, P. A., Sipe, P. S., Luckow, V. A., and Hanley-Bowdoin, L. (1994). Interaction between a geminivirus replication protein and origin DNA is essential for viral replication. J. Biol. Chem. 269, 8459-8465.
11. Frischmuth, T., and Stanley, J. (1991). African cassava mosaic virus Dl DNA interferes with the replication of both genomic components. Virology 183, 539-544.
12. Frischmuth, T., and Stanley, J. (1992). Characterization of beet curly top virus subgenomic DNA localizes sequences required for replication. Virology 189, 808-811.
13. Goetz, G. S., and Hurwitz, J. (1988). Studies on the role of the φX174 gene A protein in φX174 viral strand synthesis. III. Replication of DNA containing two viral replication origins. J. Biol. Chem. 263, 16443-16451.
14. Gros, M.-F., te Riele H., and Ehrlich, S. D. (1989). Replication origin of a single-stranded DNA plasmid pC194. EMBO J. 8, 2711-2716.
15. Hanley-Bowdoin, L., Elmer, J. S., and Rogers, S. G. (1988). Transient expression of heterologous RNAs using tomato golden mosaic virus. Nucleic Acids Res. 16, 10511-10528.
16. Hanson, S. F., Hoogstraten, R. A., Ahlquist, P., Gilbertson, R. L., Russell, D. R., and Maxwell, D. P. (1995). Mutational analysis of a putative NTP-binding domain in the replication-associated protein (AC1) of bean golden mosaic geminivirus. Virology 211, 1-9.
17. Hayes, R. J., Coutts, R. H. A., and Buck, K. W. (1989). Stability and expression of bacterial genes in replicating geminivirus vectors in plants. Nucleic Acids Res. 17, 2391-2403.
18. Heyraud, F., Matzeit, V., Schaefer, S., Schell, J., and Gronenborn, B. (1993). The conserved nonanucleotide motif of the geminivirus stemloop sequence promotes replicational release of virus molecules from redundant copies. Biochimie 75, 605-615.
19. Heyraud-Nitschke, F., Schumacher, S., Laufs, J., Schaefer, S., Schell, J., and Gronenborn, B. (1995). Determination of the origin cleavage and joining domain of geminivirus Rep proteins. Nucleic Acids Res. 23, 910-916.
20. Hirt, B. (1967). Selective extraction of polyoma DNA from infected mouse cell cultures. J. Mol. Biol. 26, 365-369.
21. Hofer, J. M. I., Dekker, E. L., Reynolds, H. V., Woolston, C. J., Cox, B. S., and Mullineaux, P. M. (1992). Coordinate regulation of replication and virion-sense gene expression in wheat dwarf virus. Plant Cell 4, 213-223.
22. Jefferson, R. A., Kavanagh, T. A., and Bevan, M. W. (1987). GUS fusions: β-glucuronidase as a sensitive and versatile gene fusion marker in higher plants. EMBO J. 6, 3901-3907.
23. Jupin, I., Hericourt, F., Benz, B., and Gronenborn, B. (1995). DNA replication specificity of TYLCV geminivirus is mediated by the amino-terminal 116 amino acids of the Rep protein. FEBS Lett. 362, 116-120.
24. Kammann, M., Schalk, H.-J., Matzeit, V., Schaefer, S., Schell, J., and Gronenborn, B. (1991). DNA replication of wheat dwarf virus, a geminivirus, requires two cis-acting signals. Virology 184, 786-790.
25. Laufs, J., Wirtz, U., Kammann, M., Matzeit, V., Schaefer, S., Schell, J., Czernilofsky, A. P., Baker, B., and Gronenborn, B. (1990). Wheat dwarf virus Ac/Ds vectors: Expression and excision of transposable elements introduced into various cereals by a viral replicon. Proc. Natl. Acad. Sci. USA 87, 7752-7756.
26. Laufs, J., Traut, W., Heyraud, F., Matzeit, V., Rogers, S. G., Schell, J., and Gronenborn, B. (1995a). In vitro cleavage and joining at the viral origin of replication by the replication initiator protein of tomato yellow leaf curl virus. Proc. Natl. Acad. Sci. USA 92, 3879-3883.
27. Laufs, J., Schumacher, S., Geisler, N., Jupin, I., and Gronenborn, B. (1995b). Identification of the nicking tyrosine of geminivirus Rep protein. FEBS Lett. 377, 258-262.
28. Laufs, J., Jupin, I., David, C., Schumacher, S., Heyraud-Nitschke, F., and Gronenborn, B. (1995c). Geminivirus replication: Genetic and biochemical characterization of Rep protein function, a review. Biochimie 77, 765-773.
29. Lazarowitz, S. G. (1992). Geminiviruses: Genome structure and gene function. Crit. Rev. Plant Sci. 11, 327-349.
30. Lazarowitz, S. G., Wu, L. C., Rogers, S. G., and Elmer, J. S. (1992). Sequence-specific interaction with the viral AL1 protein identifies a geminivirus DNA replication origin. Plant Cell 4, 799-809.
31. Macdonald, H., Coutts, R. H. A., and Buck, K. W. (1988). Characterization of a subgenomic DNA isolated from Triticum aestivum plants infected with wheat dwarf virus. J. Gen. Virol. 69, 1339-1344.
32. MacDowell, S. W., Coutts, R. H., and Buck, K. W. (1986). Molecular characterisation of subgenomic single-stranded and double-stranded DNA forms isolated from plants infected with tomato golden mosaic virus. Nucleic. Acids Res. 14, 7967-7984.
33. Martín-Parras, L., Hernández, P., Martínez-Robles, M. L., and Schvartzman, J. B. (1992). Initiation of DNA replication in ColE1 plasmids containing multiple potential origins of replication. J. Biol. Chem. 267, 22496-22505.
34. Matzeit, V., Schaefer, S., Kammann, M., Schalk, H.-J., Schell, J., and Gronenborn, B. (1991). Wheat dwarf virus vectors replicate and express foreign genes in cells of monocotyledonous plants. Plant Cell 3, 247-258.
35. Murashige, T., and Skoog, F. (1962). A revised medium for rapid growth and bioassays with tobacco tissue cultures. Physiol. Plant. 15, 473-497.
36. Nagar, S., Pedersen, T. J., Carrick, K. M., Hanley-Bowdoin, L., and Robertson, D. (1995). A geminivirus induces expression of a host DNA synthesis protein in terminally differentiated plant cells. Plant Cell 7, 705-719.
37. Orozco, B. M., and Hanley-Bowdoin, L. (1996). A DNA structure is required for geminivirus replication origin function. J. Virol. 70, 148-158.
38. Peden, K. W. C., Pipas, J. M., Pearson-White, S., and Nathans, D. (1980). Isolation of mutants of an animal virus in bacteria. Science 209, 1392-1396.
39. Perl, A., Kless, H., Blumenthal, A., Galili, G., and Galun, E. (1992). Improvement of plant regeneration and GUS expression in scutellar wheat calli by optimization of culture conditions and DNA-microprojectile delivery procedures. Mol. Gen. Genet. 235, 279-284.
40. Revington, G. N., Sunter, G., and Bisaro, D. M. (1989). DNA sequences essential for replication of the B genome component of tomato golden mosaic virus. Plant Cell 1, 985-992.
41. Rybicki, E. P. (1994). A phylogenetic and evolutionary justification for the three genera of Geminiviridae. Arch. Virol. 139, 49-77.
42. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual." Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
43. Sanford, J. C., Smith, F. D., and Russell, J. A. (1993). Optimizing the biolistic process for different biological applications. Methods Enzymol. 217, 483-509.
44. Schalk, H.-J., Matzeit, V., Schiller, B., Schell, J., and Gronenborn, B. (1989). Wheat dwarf virus, a geminivirus of graminaceous plants, needs splicing for replication. EMBO J. 8, 359-364.
45. Schneider, M., Jarchow, E., and Hohn, B. (1992). Mutational analysis of the "conserved region" of maize streak virus suggests its involvement in replication. Plant Mol. Biol. 19, 601-610.
46. Schvartzman, J. B., Adolph, S., Martín-Parras, L., and Schildkraut, C. L. (1990). Evidence that replication initiates at only some of the potential origins in each oligomeric form of bovine papillomavirus type 1 DNA. Mol. Cell. Biol. 10, 3078-3086.
47. Shen, W.-H., and Hohn, B. (1995). Vectors based on maize streak virus can replicate to high copy numbers in maize plants. J. Gen. Virol. 76, 965-969.
48. Soni, R., and Murray, J. A. H. (1994). Isolation of intact DNA and RNA from plant tissues. Anal. Biochem. 218, 474-476.
49. Stanley, J. (1993). Geminiviruses: plant viral vectors. Curr. Opin. Genet. Dev. 3, 91-96.
50. Stanley, J. (1995). Analysis of African cassava mosaic virus recombinants suggests strand nicking occurs within the conserved nonanucleotide motif during the initiation of rolling circle DNA replication. Virology 206, 707-712.
51. Stanley, J., and Townsend, R. (1985). Characterisation of DNA forms associated with cassava latent virus infection. Nucleic Acids Res. 13, 2189-2206.
52. Stanley, J., and Townsend, R. (1986). Infectious mutants of cassava latent virus generated in vivo from intact recombinant DNA clones containing single copies of the genome. Nucleic Acids Res. 14, 5981-5998.
53. Stenger, D. C., Revington, G. N., Stevenson, M. C., and Bisaro, D. M. (1991). Replicational release of geminivirus genomes from tandemly repeated copies: Evidence for rolling-circle replication of a plant viral DNA. Proc. Natl. Acad. Sci. USA 88, 8029-8033.
54. Stenger, D. C., Stevenson, M. C., Hormuzdi, S. G., and Bisaro, D. M. (1992). A number of subgenomic DNAs are produced following agroinoculation of plants with beet curly top virus. Virology 73, 237-242.
55. Suárez-López, P., Martínez-Salas, E., Hernández, P., and Gutiérrez, C. (1995). Bent DNA in the large intergenic region of wheat dwarf geminivirus. Virology 208, 303-311.
56. Timmermans, M. C. P., Das, O. P., and Messing, J. (1992). Trans replication and high copy numbers of wheat dwarf virus vectors in maize cells. Nucleic Acids Res. 20, 4047-4054.
57. Ugaki, M., Ueda, T., Timmermans, M. C. P., Vieira, J., Elliston, K. O., and Messing, J. (1991). Replication of a geminivirus derived shuttle vector in maize endosperm cells. Nucleic Acids Res. 19, 371-377.
58. Ward, A., Etessami, P., and Stanley, J. (1988). Expression of a bacterial gene in plants mediated by infectious geminivirus DNA. EMBO J. 7, 1583-1587.
59. Woolston, C. J., Barker, R., Gunn, H., Boulton, M. I., and Mullineaux, P. M. (1988). Agroinfection and nucleotide sequence of cloned wheat dwarf virus DNA. Plant Mol. Biol. 11, 35-43.
60. Woolston, C. J., Reynolds, H. V., Stacey, N. J., and Mullineaux, P. M. (1989). Replication of wheat dwarf virus DNA in protoplasts and analysis of coat protein mutants in protoplasts and plants. Nucleic Acids Res. 17, 6029-6041.
61. Xie, Q., Suárez-López, P., and Gutiérrez, C. (1995). Identification and analysis of a retinoblastoma binding motif in the replication protein of a plant DNA virus: requirement for efficient viral DNA replication. EMBO J. 14, 4073-4082
62. Xie, Q., Sanz-Burgos, A. P., Hannon, G. J., and Gutiérrez, C. (1996). Plant cells contain a novel member of the retinoblastoma family of growth regulatory proteins. EMBO J. 15, 4900-4808.