RNase H cleavage of tRNA(Pro) mediated by M-MuLV and HIV-1 reverse transcriptases

Virology

Volumn 229, Issue 2, 1997, Pages 437-446

  Smith, Christine M ^a   Potts III, Warren B ^a   Smith, Jeffrey S ^a   Roth, Monica J ^a  

^a UNIVERSITY OF MEDICINE AND DENTISTRY OF NEW JERSEY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

RNA DIRECTED DNA POLYMERASE; TRANSFER RNA;

ARTICLE; CONTROLLED STUDY; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLONEY LEUKEMIA ONCOVIRUS; NONHUMAN; PRIORITY JOURNAL; RNA CLEAVAGE; RNA SEQUENCE;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1; MOLONEY MURINE LEUKEMIA VIRUS; MURINAE; ONCOVIRINAE;

EID: 0031575825     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8454     Document Type: Article

References (59)

1. Arnold E., Jacobo-Molina A., Nanni R. G., Williams R. L., Lu X., Ding J., Clark Arthur D., Zhang A., Ferris A. L., Clark P., Hizi A., Hughes S. H. Structure of HIV-1 reverse transcriptase/DNA complex at 7Å resolution showing active site locations. Nature. 357:1992;85-89.
2. Baltimore D. RNA-dependent DNA polymerase in virions of RNA tumor viruses. Nature. 226:1970;1209-1211.
3. Barat C., Lullien V., Schatz O., Keith G., Nugeyre M. T., Gruninger-Leitch F., Barre-Sinoussi F., LeGrice S. F. J., Darlix J. L. HIV-1 reverse transcriptase specifically interacts with the anticodon domain of its cognate primer tRNA. EMBO J. 8:1989;3279-3285.
4. Berkower I., Leis J., Hurwitz J. Isolation and characterization of an endonuclease fromEscherichia coli. J. Biol. Chem. 248:1973;5914-5921.
5. Bowerman B., Brown P. O., Bishop J. M., Varmus H. E. A nucleoprotein complex mediates the integration of retroviral DNA. Genes Dev. 3:1989;469-478.
6. Bukrinsky M. I., Sharova N., Donald T. L. M., Pushkarskaya T., Tarpley W. G., Stevenson M. Association of integrase, matrix, and reverse transcriptase antigens of human immunodeficiency virus type I with viral nucleic acids following acute infection. Proc. Natl. Acad. Sci. USA. 90:1993;6125-6129.
7. Colicelli J., Goff S. P. Mutants and pseudorevertants of Moloney murine leukemia virus with alterations at the integration site. Cell. 42:1985;573-580.
8. Colicelli J., Goff S. P. Structure of a cloned circular retroviral DNA containing a tRNA sequence between the terminal repeats. J. Virol. 57:1986;674-677.
9. Colicelli J., Goff S. P. Sequence and spacing requirements of a retrovirus integration site. J. Mol. Biol. 199:1988;47-59.
10. Draper D. E. Protein-RNA recognition. Annu. Rev. Biochem. 64:1995;593-620.
11. England T. E., Uhlenbeck O. C. 3′-terminal labeling of RNA with T4 RNA ligase. Nature. 275:1978;561-562.
12. Evans D. B., Brawn K., Martin R., Deibel J., Tarpley W. G., Sharma S. K. A recombinant ribonuclease H domain of HIV-1 reverse transcriptase that is enzymatically active. J. Biol. Chem. 266:1991;20583-20585.
13. Farnet C. M., Haseltine W. A. Determination of viral proteins present in the human immunodeficiency virus type 1 preintegration complex. J. Virol. 65:1991;1910-1915.
14. Lys3. Biochemistry. 30:1991a;7041-7046.
15. Furfine E. S., Reardon J. E. Reverse transcriptase-RNase H from the human immunodeficiency virus. J. Biol. Chem. 266:1991b;406-412.
16. Haseltine W. A., Panet A., Smoler D. Interaction of tryptophan tRNA and avian myeoblastosis reverse transcriptase: Further characterization of the binding reaction. Biochemistry. 16:1977;3625-3632.
17. Hirt B. Selective extraction of polyoma DNA from infected mouse cultures. J. Mol. Biol. 26:1967;365-369.
18. Hong T., Drlica K., Pinter A., Murphy E. Circular DNA of human immunodeficiency virus: Analysis of circle junction nucleotide sequences. J. Virol. 65:1991;551-555.
19. Jacobo-Molina A., Arnold E. HIV reverse transcriptase structure-function relationship. Biochemistry. 30:1991;6351-6361.
20. Jacobo-Molina A., Ding J., Nanni R. G., Arthur D., Clark J., Lu X., Tantillo C., Williams R. L., Kamer G., Ferris A. L., Clark P., Hizi A., Hughes S. H., Arnold E. Crystal structure of human immunodeficiency virus type 1 reverse transcriptase complexed with double-stranded DNA at 3.0 Å resolution shows bent DNA. Proc. Natl. Acad. Sci. USA. 90:1993;6320-6324.
21. Jurriaans S., Ronde A. D., Dekker J., Goudsmit J., Cornellissen M. Analysis of human immunodeficiency virus type 1 LTR-LTR junctions in peripheral blood mononuclear cells of infected individuals. J. Gen. Virol. 73:1992;1537-1541.
22. Kang A. S., Barbas C. F., Janda K. D., Benkovic S. J., Lerner R. A. Linkage of recognition and replication functions by assembling combinatorial antibody Fab libraries along phage surfaces. Proc. Natl. Acad. Sci. USA. 88:1991;4363-4366.
23. Katayanagi K., Miyagawa M., Matsushima M., Ishikawa M., Kanaya S., Ikehara M., Matsuzaki T., Morikawa K. Three-dimensional structure of ribonuclease H fromE. coli. Nature. 347:1990;306-309.
24. Kohlstaedt L. A., Steitz T. A. Reverse transcriptase of human immunodeficiency virus can use either tRNA(Lys,3) orEscherichia coli. Proc. Natl. Acad. Sci. USA. 89:1992;9652-9656.
25. Kohlstaedt L. A., Wang J., Friedman J. M., Rice P. A., Steitz T. A. Crystal structure at 3.5 Å resolution of HIV-1 reverse transcriptase complexed with an inhibitor. Science. 256:1992;1783-1790.
26. Konarska M. M., Grabowski P. J., Padgett R. A., Sharp P. A. Characterization of the branch site in lariat RNA produced by splicing of mRNA precursors. Nature. 313:1985;552-557.
27. Kulkosky J., Katz R. A., Skalka A. M. Terminal nucleotides of the preintegrative linear form of HIV-1 DNA deduced from the sequence of circular DNA junctions. J. Acquired Immune Defic. Syndr. 3:1990;852.
28. Leis J., Aiyar A., Cobrinik D. Regulation of initiation of reverse transcription of retroviruses. Reverse Transcriptase. 1993;Cold Spring Harbor Laboratory, Cold Spring Harbor. p. 33-47.
29. Levin J. G. Selective packaging of host tRNA's by murine leukemia virus does not require genomic RNA. J. Virol. 68:1979;328-335.
30. Murphy J., Goff S. Construction and analysis of deletion mutations in the U5 region of Moloney murine leukemia virus: Effects on RNA packaging and reverse transcription. J. Virol. 63:1989;319-327.
31. Olsen J. C., Swanstrom R. A new pathway in the generation of defective retrovirus DNA. J. Virol. 56:1985;779-789.
32. Panet A., Berliner H. Binding of tRNA to reverse transcriptase of RNA tumor viruses. J. Virol. 26:1978;214-220.
33. Panet A., Haseltine W. A., Baltimore D., Peters G., Harada F., Dahlberg J. E. Specific binding of tryptophan transfer RNA to avian myeloblastosis virus RNA-dependent DNA polymerase (reverse transcriptase). Proc. Natl. Acad. Sci. USA. 72:1975;2535-2539.
34. Patel P., Preston B. D. Marked infidelity of human immunodeficiency type I reverse transcriptase at RNA and DNA template ends. Proc. Natl. Acad. Sci. USA. 91:1994;549-553.
35. Pauza C. D. Two bases are deleted from the termini of HIV-1 linear DNA during integrative recombination. Virology. 179:1990;886-889.
36. Pullen K. A., Ishimoto L. K., Champoux J. J. Incomplete removal of the RNA primer for minus-strand DNA synthesis by human immunodeficiency virus type 1 reverse transcriptase. J. Virol. 66:1992;367-373.
37. Repaske R., Hartley J. W., Kavlick M. F., O'Neill R. R., Austin J. B. Inhibition of RNase H activity and viral replication by single mutations in the 3′ region of Moloney murine leukemia virus reverse transcriptase. J. Virol. 63:1989;1460-1464.
38. Roth M. J., Schwartzberg P., Goff S. P. Structure of the termini of DNA intermediates in the integration of retroviral DNA: Dependence of IN function and terminal DNA sequence. Cell. 58:1989;47-54.
39. Roth M. J., Tanese N., Goff S. P. Purification and characterization of murine retroviral reverse transcriptase expressed inEscherichia coli. J. Biol. Chem. 260:1985;9326-9335.
40. Sallafranque-Andreola M. L., Robert D., Barr P. Human immunodeficiency virus reverse transcriptase expressed in transformed yeast cells: Biochemical properties and interactions with bovine tRNA(lys). Eur. J. Biochem. 184:1989;367-374.
41. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
42. Schatz O., Cromme F. V., Gruninger-Leitch F., LeGrice S. F. J. Point mutations in conserved amino acid residues within the C-terminal domain of HIV-1 reverse transcriptase specifically repress RNase H function. FEBS Lett. 237:1989;311-314.
43. Schultz S. J., Whiting S. H., Champoux J. J. Cleavage specificities of Moloney murine leukemia virus RNase H implicated in the second strand transfer during reverse transcription. J. Biol. Chem. 270:1995;24135-24145.
44. Shinnick T. M., Lerner R. A., Sutcliffe J. G. Nucleotide sequence of Moloney murine leukaemia virus. Nature. 293:1981;543-548.
45. Shoemaker C., Goff S., Gilboa E., Pasking M., Mitra S. W., Baltimore D. Structure of a cloned circular Moloney murine leukemia virus molecule containing an inverted segment: Implications for retrovirus integration. Proc. Natl. Acad. Sci. USA. 77:1980;3932-3936.
46. Smith J. S., Roth M. J. Specificity of human immunodeficiency virus-1 reverse transcriptase-associated ribonuclease H in removal of the minus-strand primer, tRNALys3. J. Biol. Chem. 267:1992;15071-15079.
47. Smith J. S., Roth M. J. Purification and characterization of an active human immunodeficiency virus type 1 RNase H domain. J. Virol. 67:1993;4037-4049.
48. Smith J. S., Gritsman K., Roth M. J. Contributions of DNA polymerase subdomains to the RNase H activity of HIV-1 reverse transcriptase. J. Virol. 68:1994;5721-5729.
49. Smith J. S., Kim S., Roth M. J. Analysis of long terminal repeat circle junctions of human immunodeficiency virus type 1. J. Virol. 64:1990;6286-6290.
50. Tanese N., Goff S. P. Domain structure of Moloney murine leukemia virus reverse transcriptase: Mutational analysis and separate expression of the DNA polymerase and RNase H activities. Proc. Natl. Acad. Sci. USA. 85:1988;1777-1781.
51. Tanese N., Roth M. J., Goff S. P. Expression of enzymatically active reverse transcriptase inEscherichia coli. Proc. Natl. Acad. Sci. USA. 82:1985;4944-4948.
52. Temin H., Mizutani S. RNA-dependent DNA polymerase in virions of Rous sarcoma virus. Nature. 226:1970;1211-1213.
53. Tisdale M., Schulze T., Larder B. A., Moelling K. Mutations within RNase H domain of HIV-1 reverse transcriptase abolish virus infectivity. J. Gen. Virol. 72:1991;59-66.
54. Vogelstein B., Gillespie D. Preparative and analytical purification of DNA from agarose. Proc. Natl. Acad. Sci. USA. 76:1979;615-619.
55. Wakefield J. K., Rhim H., Morrow C. D. Minimal sequence requirements of a functional human immunodeficiency type 1 primer binding site. J. Virol. 68:1994;1605-1614.
56. Wohrl B. M., Ehresman B., Keith, Grice S. F. L. Nuclease footprinting of human immunodeficiency virus/tRNA(Lys-3) complex. J. Biol. Chem. 268:1993;13617-13624.
57. Wohrl B. M., Georgiadis M. M., Telesnitsky A., Hendrickson W. A., Grice S. F. L. Footprint analysis of replicating murine leukemia virus reverse transcriptase. Science. 267:1995a;96-99.
58. Wohrl B. M., Tantillo C., Arnold E., Grice S. F. L. An expanded model of replicating human immunodeficiency virus reverse transcriptase. Biochemistry. 34:1995b;5343-5356.
59. Yang W., Hendrickson W. A., Crouch R. J., Satow Y. Structure of ribonuclease H phased at 2Å resolution by MAD analysis of the selenomethionyl protein. Science. 249:1990;1398-1405.