An integrated transcript map of human chromosome 1p35-p36

Genomics

Volumn 42, Issue 1, 1997, Pages 126-136

  Jensen, Sanford J ^a   Sulman, Erik P ^a   Maris, John M ^a,b   Matise, Tara C ^c   Vojta, Patrick J ^d,e   Barrett, J Carl ^d   Brodeur, Garrett M ^a,b   White, Peter S ^a  

^a CHILDREN S HOSPITAL OF PHILADELPHIA   (United States)

^b UNIVERSITY OF PENNSYLVANIA   (United States)

^c ROCKEFELLER UNIVERSITY   (United States)

^d NATIONAL INSTITUTE OF ENVIRONMENTAL HEALTH SCIENCES   (United States)

^e Lineberry Associates   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT;

ANIMAL CELL; ARTICLE; CHROMOSOME 1P; CHROMOSOME MAP; CHROMOSOME REARRANGEMENT; GENE MAPPING; GENETIC DISORDER; GENETIC LINKAGE; GENETIC MARKER; HUMAN; MOUSE; NONHUMAN; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; SEQUENCE TAGGED SITE;

EID: 0031570317     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1997.4714     Document Type: Article

References (37)

1. Annab, L. A., Dong, J. T., Futreal, P. A., Satoh, H., Oshimura, M., and Barrett, J. C. (1992). Growth and transformation suppressor genes for BHK Syrian hamster cells on human chromosomes 1 and 11. Mol. Carcinogen. 6: 280-288.
2. Ariyama, T., Inazawa, J., Ezaki, T., Nakamura, Y., Horii, A., and Abe, T. (1995). High-resolution cytogenetic mapping of the short arm of chromosome 1 with newly isolated 411 cosmid markers by fluorescence in situ hybridization: The precise order of 18 markers on 1p36.1 on prophase chromosomes and "stretched" DNAs. Genomics 25: 114-123.
3. Axelrod, J. D., Matsuno, K., Artavanis-Tsakonas, S., and Perrimon, N. (1996). Interaction between Wingless and Notch signaling pathways mediated by dishevelled. Science 271: 1826-1832.
4. Barnas, C. M., Onyango, P., Ellmeier, W., Lengauer, C., Kleiner, E., Henn, T., Brunner, C., Stapleton, P., and Weith, A. (1995). Determination and regional assignment of grouped sets of microclones in chromosome 1pter-p35. Genomics 29: 607-615.
5. Beltinger, C. P., White, P. S., Maris, J. M., Sulman, E. P., Jensen, S. J., LePaslier, D., Stallard, B. J., Goeddel, D. V., deSauvage, F. J., and Brodeur, G. M. (1996). Physical mapping and genomic structure of the human TNFR2 gene. Genomics 35: 94-100.
6. Ben Othmane, K., Middelton, L. T., Loprest, L. J., Wilkinson, K. M., Lennon, F., Rozear, M. P., Stajich, J. M., Gaskell, P. C., Roses, A. D., Pericak-Vance, P., and Vance, J. M. (1993). Localization of a gene (CMT2A) for autosomal dominant Charcot-Marie-Tooth disease type 2 to chromosome 1p and evidence of genetic heterogeneity. Genomics 17: 370-375.
7. Boguski, M. S., and Schuler, G. D. (1995). ESTablishing a human transcript map. Nature Genet. 10: 369-371.
8. Casciano, I., Marchi, J. V. M., Muresu, R., Volpi, E. V., Rozzo, C., Opdenakker, G., and Romani, M. (1996). Molecular and genetic studies on the region of translocation and duplication in the neuroblastoma cell line NGP at the 1p36.13-p36.32 chromosomal site. Oncogene 12: 2101-2108.
9. Chumakov, I. M., Rigault, P., Le Gall, I., Bellanne-Chantelot, C., Billault, A., Guillou, S., Soularue, P., Guasconi, G., Poullier, E., Gros, I., Belova, M., Sambucy, J.-L., Susini, L., Gervy, P., Glibert, F., Beaufils, S., Bul, H., Massart, C., De Tand, M.-F., Dukasz, F., et al. (1995). A YAC contig map of the human genome. Nature 377: 175-297.
10. Collins, F. S. (1995). Positional cloning moves from perditional to traditional. Nature Genet. 9: 347-350.
11. Cox, D. R., Burmeister, M., Price, E. R., Kim, S., and Myers, R. M. (1990). Radiation hybrid mapping: A somatic cell genetic method for constructing high-resolution maps of mammalian chromosomes. Science 250: 245-250.
12. Dausset, J., Cann, H., Cohen, D., Lathrop, M., Lalouel, J. M., and White, R. (1990). Centre d'etude du polymorphisme humain (CEPH): Collaborative genetic mapping of the human genome. Genomics 6: 575-577.
13. Dib, C., Fauré, S., Fizames, C., Samson, D., Drouot, N., Vignal, A., Millasseau, P., Marc, S., Kazan, J., Seboun, E., Lathrop, M., Gyapay, G., Morissette, J., and Weissenbach, J. (1996). A comprehensive genetic map of the human genome based on 5,264 microsatellites. Nature 380: 152-154.
14. Dracopoli, N. C., O'Connell, P., Elsner, T. I., Lalouel, J. M., White, R. L., Buetow, K. H., Nishimura, D. Y., Murray, J. C., Helms, C., Mishra, S. K., Donis-Keller, H., Hall, J. M., Lee, M. K., King, M. C., Attwood, J., Morton, N. E., Robson, E. B., Mahtani, M., Willard, H. F., Royle, N. J., et al. (1991). The CEPH consortium linkage map of human chromosome 1. Genomics 9: 686-700.
15. Eiberg, H., Lund, A. M., Warburg, M., and Rosenberg, T. (1995). Assignment of congenital cataract Volkmann type (CCV) to chromosome 1p36. Hum. Genet. 96: 33-38.
16. Engelstein, M., Hudson, T. J., Lane, J. M., Lee, M. K., Leverone, B., Landes, G. M., Peltonen, L., Weber, J. L., and Dracopoli, N. C. (1993). A PCR-based linkage map of human chromosome 1. Genomics 15: 251-258.
17. Fontaine, B., Nicole, S., Topaloglu, H., Ben Hamida, C., Beighton, P., Spaans, F., Cantu, J. M. A., Bakouri, S., Romero, N., Ricker, K., Barros-Nunez, P., Ponsot, G., Ben Hamida, M., Weissenbach, J., Fardeau, M., Hentati, F., and Lehmann-Horn, F. (1996). Recessive Schwartz-Jampel syndrome (SJS): Confirmation of linkage to chromosome 1p, evidence of genetic homogeneity and reduction of the SJS locus to a 3-cM interval. Hum. Genet. 98: 380-385.
18. Forabosco, P., Collins, A., and Morton, N. E. (1995). Integration of gene maps: Updating chromosome 1. Ann. Hum. Genet. 59: 291-305.
19. Hudson, T. J., Stein, L. D., Gerety, S. S., Ma, J., Castle, A. B., Silva, J., Slonim, D. K., Baptista, R., Kruglyak, L., Xu, S.-H., Hu, X., Colbert, A. M. E., Rosenberg, C., Reeve-Daly, M. P., Rozen, S., Hui, L., Wu, X., Vestergaard, C., Wilson, K. M., Bae, J. S., et al. (1995). An STS-based map of the human genome. Science 270: 1945-1954.
20. Keppler-Noreuil, K. M., Carroll, A. J., Finley, W. H., and Rutledge, S. L. (1995). Chromosome 1p terminal deletion: Report of new findings and confirmation of two characteristic phenotypes. J. Med. Genet. 32: 619-622.
21. Koi, M., Morita, H., Yamada, H., Satoh, H., Barrett, J. C., and Oshimura, M. (1989a). Normal human chromosome 11 suppresses tumorigenicity of human cervical tumor cell line SiHa. Mol. Carcinogen. 2: 12-21.
22. Koi, M., Shimizu, M., Morita, H., Yamada, H., and Oshimura, M. (1989b). Construction of mouse A9 clones containing a single human chromosome tagged with neomycin-resistance gene via microcell fusion. Jpn. J. Cancer Res. 80: 413-418.
23. Maris, J. M., Jensen, S. J., Sulman, E. P., Beltinger, C. P., Gates, K., Allen, C., Biegel, J. A., Brodeur, G. M., and White, P. S. (1996). Cloning, chromosomal localization, physical mapping and genomic characterization of HKR3. Genomics 35: 289-298.
24. Matise, T. C., Perlin, M., and Chakravarti, A. (1994). Automated construction of genetic linkage maps using an expert system (MultiMap): A human genome linkage map. Nature Genet. 6: 384-390.
25. Murray, J. C., Buetow, K. H., Weber, J. L., Ludwigsen, S., Scherpbier-Heddema, T., Manion, F., Quillen, J., Sheffield, V. C., Sunden, S., Duyk, G. M., Weissenbach, J., Gyapay, G., Dib, C., Morrissette, J., Lathrop, G. M., Vignal, A., White, R., Matsunami, N., Gerken, S., Melis, R., et al. (1994). A comprehensive human linkage map with centimorgan density. Science 265: 2049-2054.
26. Olson, M., Hood, L., Cantor, C., and Botstein, D. (1989). A common language for physical mapping of the human genome. Science 245: 1434-1435.
27. Rozen, S., and Skaletsky, H. J. (1996). Primer3: Code available at http://www-genome.wi.mit.edu/genome_software/other/ primer3.html.
28. Schuler, G. D., Boguski, M. S., Stewart, E. A., Stein, L. D., Gyapay, G., Rice, K., White, R. E., Rodriguez-Tomé, P., Aggarwal, A., Bajorek, E., Bentolila, S., Birren, B., Butler, A., Castle, A. B., Chiannilkulchai, N., Chu, A., Clee, C., Cowles, S., Day, P. J. R., Dibling, T., et al. (1996). A gene map of the human genome. Science 274: 540-546.
29. Schwab, M., Praml, C., and Amler, L. (1996). Genomic instability in 1p and human malignancies. Genes Chromosomes Cancer 16: 211-229.
30. Shearman, A. M., Hudson, T. J., Andresen, J. M., Wu, X., Skohn, R. L., Haluska, F., Housman, D. E., and Weiss, J. S. (1996). The gene for Schnyder's crystalline corneal dystrophy maps to human chromosome 1p34.1-p36. Am. J. Hum. Genet. Suppl. 59: A17.
31. Sugawara, O., Oshimura, M., Koi, M., Annab, L. A., and Barrett, J. C. (1990). Induction of cellular senescence in immortalized cells by human chromosome 1. Science 247: 707-710.
32. van der Schroeff, J. G., Nijenhuis, L. E., Meera Khan, P., Bernini, L. F., Schreuder, G. M. T., van Loghem, E., Volkers, W. S., and Went, L. N. (1984). Genetic linkage between erythrokeratodermia variabilis and Rh locus. Hum. Genet. 68: 165-168.
33. van Roy, N., Laureys, G., Versteeg, R., Opdenakker, G., and Speleman, F. (1993). High-resolution fluorescence mapping of 46 DNA markers to the short arm of human chromosome 1. Genomics 18: 71-78.
34. Vocero-Akbani, A., Helms, C., Wang, J.-C., Sanjurjo, F. J., Korte-Sarfaty, J., Veile, R. A., Liu, L., Jauch, A., Burgess, A. K., Hing, A. V., Holt, M. S., Ramachandra, S., Whelan, A. J., Anker, R., Ahrent, L., Chen, M., Gavin, M. R., Iannantuoni, K., Morton, S. M., Pandit, S. D., et al. (1996). Mapping human telomere regions with YAC and P1 clones: Chromosome-specific markers for 27 telomeres including 149 STSs and 24 polymorphisms for 14 proterminal regions. Genomics 36: 492-506.
35. Weith, A., Brodeur, G. M., Bruns, G. A. P., Matise, T. C., Mischke, D., Nizetic, D., Seidin, M. F., van Roy, N., and Vance, J. (1995). Report of the Second International Workshop on Human Chromosome 1 Mapping 1995. Cytogenet. Cell Genet. 113-154.
36. White, P. S., Kaufman, B. A., Marshall, H. N., and Brodeur, G. M. (1993). Use of the single-strand conformation polymorphism technique to detect loss of heterozygosity in neuroblastoma. Genes Chromosomes Cancer 7: 102-108.
37. White, P. S., Maris, J. M., Beltinger, C., Sulman, E., Marshall, H. N., Fujimori, M., Kaufman, B. A., Biegel, J. A., Allen, C., Hilliard, C., Valentine, M. B., Look, A. T., Enomoto, H., Sakiyama, S., and Brodeur, G. M. (1995). A region of consistent deletion in neuroblastoma maps within 1p36.2-.3. Proc. Natl. Acad. Sci. USA 92: 5520-5524.