The human hepatocyte nuclear factor 3/fork head gene FKHL13: Genomic structure and pattern of expression

Genomics

Volumn 40, Issue 3, 1997, Pages 462-469

  Murphy, Derek B ^a   Seemann, Stefanie ^a   Wiese, Stefan ^a   Kirschner, Renate ^a   Grzeschik, Karl H ^b   Thies, Ulrike ^a  

^a Institut für Humangenetik   (Germany)

^b MZ für Augenheilkunde   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

NUCLEAR FACTOR I; TRANSCRIPTION FACTOR;

AMINO ACID ANALYSIS; ARTICLE; AXONEME; CELL DIFFERENTIATION; CELL PROLIFERATION; DNA DETERMINATION; DNA SEQUENCE; GENE EXPRESSION; GENE ISOLATION; GENE STRUCTURE; HUMAN; HUMAN CELL; INTRON; MULTIGENE FAMILY; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN STRUCTURE; SPECIES DIFFERENTIATION;

EID: 0031569416     PISSN: 08887543     EISSN: None     Source Type: Journal    
DOI: 10.1006/geno.1996.4587     Document Type: Article

References (31)

1. Avraham, K. B., Fletcher, C., Overdier, D. G., Clevidence, D. E., Lai, E., Costa, R. H., Jenkins, N. A., and Copeland, N. G. (1995). Murine chromosomal location of eight members of the hepatocyte nuclear factor 3/fork head winged helix family of transcription factors. Genomics 25: 388-393.
2. Chomczynski, P., and Sacchi, N. (1987). Single step method of RNA isolation by acid guanidinum thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162: 156-159.
3. Clevidence, D. E., Overdier, D. G., Tao, W., Qian, X., Pani, L., Lai, E., and Costa, R. H. (1993). Identification of nine tissue-specific transcription factors of the hepatocyte nuclear factor3/fork head DNA-binding domain family. Proc. Natl. Acad. Sci. USA 90: 3948-3952.
4. Costa, R. H. (1994). Hepatocyte nuclear factor 3/fork head protein family: Mammalian transcription factors that possess divergent cellular expression patterns and binding specificities. In "Liver Gene Transcription" (F. Tronche and M. Yaniv, Eds.), R. G. Landes, Austin, Texas.
5. Cross, S. H., Charlton, J. A., Nan, X., and Bird, A. P. (1994). Purification of CpG islands using a methylated DNA binding column. Nature Genet. 6: 236-44.
6. Cross, S. H., and Bird, A. P. (1995). CpG islands and genes. Curr. Opin. Genet. Dev. 5: 309-314.
7. Domenjoud, L., Nussbaum, G., Adham, I. M., Greeske, G., and Engel, W. (1990). Genomic sequences of human protamine, whose genes, PRM1 and PRM2, are clustered. Genomics 8: 127-133.
8. Dutcher, S. K. (1995). Flagellar assembly in two hundred and fifty easy-to-follow steps. Trends Genet. 11: 398-404.
9. Galili, N., Davis, R. J., Fredericks, W. J., Mukhopadhyay, S., Rauscher, F. J., III, Emanuel, B. S., Rovera, G., and Barr, F. G. (1993). Fusion of a fork head domain gene to PAX3 in the solid tumor alveolar rhabdomyosarcoma. Nature Genet. 5: 230-235.
10. Hackett, B. P., Brody, S. L., Liang, M., Zeitz, I. D., Bruns, L. A., and Gitlin, J. D. (1995). Primary structure of hepatocyte nuclear factor/ forkhead homologue 4 and characterization of gene expression in the developing respiratory and reproductive epithelium. Proc. Natl. Acad. Sci. USA 92: 4249-4253.
11. Kaestner, K. H., Hiemisch, H., Luckow, B., and Schutz, G. (1994). The HNF-3 gene family of transcription factors in mice: Gene structure, cDNA sequence, and mRNA distribution. Genomics 20: 377-385.
12. Kozak, M. (1989). The scanning model for translation: An update. J. Cell Biol. 108: 229-241.
13. Lai, E., Preszioso, V. R., Smith, E., Livtin, O., Costa, R. H., and Darnell, J. E., Jr. (1990). HNF3A, a hepatocyte-enriched transcription factor of novel structure is regulated transcriptionally. Genes Dev. 4: 1427-1436.
14. Miller, S. A., Dykes, D. D., and Polesky, H. F. (1988). A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16: 1215.
15. Murphy, D. B., Wiese, S., Burfeind, P., Schmundt, D., Mattei, M.-G., Schulz-Schaeffer, W., and Thies, U. (1994). Human brain factor 1, a new member of the fork head gene family. Genomics 21: 551-557.
16. Nehls, M., Pfeifer, D., Schorpp, M., Hedrich, H., and Boehm, T. (1994). New member of the winged-helix protein family disrupted in mouse and rat nude mutations. Nature 372: 103-107.
17. Pabo, C. O., and Sauer, R. T. (1992). Transcription factors: Structural families and principles of DNA recognition. Annu. Rev. Biochem. 61: 1053-1095.
18. Palmer, J. D., and Logsdon, J. M., Jr. (1991). The recent origins of introns. Curr. Opin. Genet. Dev. 1: 470-177.
19. Parry, P., Wie, Y., and Evans, G. (1994). Cloning and characterization of the t(X;11) breakpoint from a leukemic cell line identify a new member of the forkhead gene family. Genes Chromosomes Cancer 11: 79-84.
20. Porter, M. E. (1996). Axonemal dyneins: Assembly, organization and regulation. Curr. Opin. Cell Biol. 8: 10-17.
21. Rapp, G., Mucha, J., Einspanier, R., Luck, M., and Scheit, K. H. (1989). Cloning and sequence analysis of a cDNA from human ovarian granulosa cells encoding the C-terminal part of human elongation factor 2. Biol. Chem. Hoppe Seyler 369: 247-250.
22. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1989). "Molecular Cloning: A Laboratory Manual," Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
23. Sanger, F., Nicklen, S., and Coulson, A. R. (1977). DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA 74: 5463-5467.
24. Schlösser, M., Slomski, R., Wagner, M., Reiss, J., Berg, L-P., Kakkar, V. V., and Cooper, D. (1990). Characterization of the pathological dystrophin transcripts from the lymphocytes of a muscular dystrophy carrier. Mol. Biol. Med. 7: 519-523.
25. Szpirer, J., Levan, G., Thörn, M., and Szpirer, C. (1984). Gene mapping in rat by mouse-rat somatic cell hybridization: Synteny of the albumin and alpha-fetoprotein genes and assignment to chromosome 14. Cytogenet. Cell Genet. 38: 142-149.
26. Vassin, E. F., Goldberg, G. I., Tucker, P. W., and Smithias, O. (1980). A mouse α-globin related pseudogene lacking intervening sequences. Nature 286: 222-226.
27. Weigel, D., Jürgens, G., Küttner, F., Seifert, E., and Jäckle, H. (1989). The homeotic gene fork head encodes a nuclear protein and is expressed in terminal regions of the Drosophila embryo. Cell 57: 645-658.
28. Wiese, S., Murphy, D. B., Schlung, A., Burfeind, P., Schmundt, D., Schnülle, V., Mattei, M.-G., and Thies, U. (1995). Human brain factor 2 is a member of the fork head gene family and is linked to the human brain factor 1 gene on chromosome 14q. Biochim. Biophys. Acta 1262: 105-112.
29. Wiese, S., Emmerich, D., Schröder, B., Murphy, D. B., Grzeschik, K. H., Geurts van Kessel, A., and Thies, U. (1996). The novel human HNF-3/fork head like 5 (HFKL5) gene: Chromosomal localization and expression pattern. Submitted for publication.
30. Wilkinson, D. G. (1992). "In Situ Hybridization: A Practical Approach," IRL/Oxford Univ. Press, London.
31. Winnacker, E.-L. (1990). "Gene und Klone: Eine Einführung in die Gentechnologie," V.C.H. Weinheim, Germany.