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Volumn 188, Issue 3, 1997, Pages 343-353

The preferential mode analysis of DNA sequence

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

EID: 0031558564     PISSN: 00225193     EISSN: None     Source Type: Journal    
DOI: 10.1006/jtbi.1997.0485     Document Type: Article
Times cited : (2)

References (41)
  • 1
    • 0023057525 scopus 로고
    • Diversity in G + C content at 3rd position of condons in vertebrate genes and its cause
    • Aota, S. & IKEMURA, T. (1986). Diversity in G + C content at 3rd position of condons in vertebrate genes and its cause. Nucl. Acids Res. 14, 6345-6355.
    • (1986) Nucl. Acids Res. , vol.14 , pp. 6345-6355
    • Aota, S.1    Ikemura, T.2
  • 2
    • 0000236451 scopus 로고
    • Characterizing long-range correlations in DNA sequences from wavelet analysis
    • ARNEODO, A., BACRY, E., GRAVES, P. V. & MUZY, J. F. (1995). Characterizing long-range correlations in DNA sequences from wavelet analysis. Phys. Rev. Lett. 74, 3293-3296.
    • (1995) Phys. Rev. Lett. , vol.74 , pp. 3293-3296
    • Arneodo, A.1    Bacry, E.2    Graves, P.V.3    Muzy, J.F.4
  • 3
    • 0022914759 scopus 로고
    • Compositional constraints and genome evolution
    • BERNARDI, G. & BERNARDI, G. (1986). Compositional constraints and genome evolution. J. Mol. Evol. 24, 1-11.
    • (1986) J. Mol. Evol. , vol.24 , pp. 1-11
    • Bernardi, G.1    Bernardi, G.2
  • 5
    • 0020385863 scopus 로고
    • Mechanics of sequence-dependent stacking of bases in B-DNA
    • CALLANDINE, C. R. (1982). Mechanics of sequence-dependent stacking of bases in B-DNA. J. Mol. Biol. 161, 343-352.
    • (1982) J. Mol. Biol. , vol.161 , pp. 343-352
    • Callandine, C.R.1
  • 6
    • 21344486283 scopus 로고
    • The spectral criteria of disorder in nonperiodic sequences
    • CHECHETKIN, V. R. & TURYGIN, A. YU. (1994). The spectral criteria of disorder in nonperiodic sequences. J. Phys. A: Math and Gen. 27, 4875-898; (1996) Study of correlation in DNA sequence. J. theor. Biol. 178, 205-217.
    • (1994) J. Phys. A: Math and Gen. , vol.27 , pp. 4875-4898
    • Chechetkin, V.R.1    Turygin, A.Yu.2
  • 7
    • 0029933183 scopus 로고    scopus 로고
    • Study of correlation in DNA sequence
    • CHECHETKIN, V. R. & TURYGIN, A. YU. (1994). The spectral criteria of disorder in nonperiodic sequences. J. Phys. A: Math and Gen. 27, 4875-898; (1996) Study of correlation in DNA sequence. J. theor. Biol. 178, 205-217.
    • (1996) J. Theor. Biol. , vol.178 , pp. 205-217
  • 8
    • 0020619672 scopus 로고
    • Base sequence and helical structure variation in B and A DNA
    • DICKERSON, R. E. (1983). Base sequence and helical structure variation in B and A DNA. J. Mol. Biol. 166, 419-441.
    • (1983) J. Mol. Biol. , vol.166 , pp. 419-441
    • Dickerson, R.E.1
  • 10
    • 0028778058 scopus 로고
    • On the origin of the periodicity of three in protein coding DNA sequences
    • GUTIERREZ, G., OLIVER, J. L. & MARIN, A. (1994). On the origin of the periodicity of three in protein coding DNA sequences. J. theor. Biol. 167, 413-414.
    • (1994) J. Theor. Biol. , vol.167 , pp. 413-414
    • Gutierrez, G.1    Oliver, J.L.2    Marin, A.3
  • 11
    • 0001818891 scopus 로고
    • Measuring correlations in symbol sequences
    • HERZEL, H. & GROSSE I. (1995). Measuring correlations in symbol sequences. Physica A216, 518.
    • (1995) Physica , vol.A216 , pp. 518
    • Herzel, H.1    Grosse, I.2
  • 12
    • 0019824131 scopus 로고
    • Correlation between the abundance of E. coli tRNA and the occurrence of the respective codons in its protein genes
    • IKEMURA, T. (1981). Correlation between the abundance of E. coli tRNA and the occurrence of the respective codons in its protein genes. J. Mol. Biol. 151, 389-409.
    • (1981) J. Mol. Biol. , vol.151 , pp. 389-409
    • Ikemura, T.1
  • 14
    • 0025269273 scopus 로고
    • Genomic organization and physical mapping of the tRNA genes in E. coli K12
    • KOMINE, Y., ADACHI, T., INOKUCHI, H. & OZEKI, H. (1990). Genomic organization and physical mapping of the tRNA genes in E. coli K12. J. Mol. Biol. 212, 579-598.
    • (1990) J. Mol. Biol. , vol.212 , pp. 579-598
    • Komine, Y.1    Adachi, T.2    Inokuchi, H.3    Ozeki, H.4
  • 16
    • 0001159629 scopus 로고    scopus 로고
    • The periodicity of base correlation in nucleotide sequence
    • LEE, W. J. & LUO, L. F. (1997). The periodicity of base correlation in nucleotide sequence. Phys. Rev. E. 56, 848-851.
    • (1997) Phys. Rev. E. , vol.56 , pp. 848-851
    • Lee, W.J.1    Luo, L.F.2
  • 17
    • 0022352883 scopus 로고
    • Eukaryotic oligomer frequencies are correlated with DNA helical parameters
    • LENNON, G. & NUSSINOV, R. (1985). Eukaryotic oligomer frequencies are correlated with DNA helical parameters. J. theor. Biol. 22, 427-433.
    • (1985) J. Theor. Biol. , vol.22 , pp. 427-433
    • Lennon, G.1    Nussinov, R.2
  • 18
    • 84956088098 scopus 로고
    • 1α spectrum in a noncoding DNA sequence
    • 1α spectrum in a noncoding DNA sequence. Europhys. Lett. 17, 655-660.
    • (1992) Europhys. Lett. , vol.17 , pp. 655-660
    • Li, W.1    Kaneko2
  • 19
    • 0028148067 scopus 로고
    • Third codon G + C periodicity as a possible signal for an internal selective constraint
    • LIO, P., RUFFO, S. & BUIATTI, M. (1994). Third codon G + C periodicity as a possible signal for an internal selective constraint. J. theor. Biol. 171, 215-223.
    • (1994) J. Theor. Biol. , vol.171 , pp. 215-223
    • Lio, P.1    Ruffo, S.2    Buiatti, M.3
  • 20
    • 0029058712 scopus 로고
    • The maximum information principle and the evolution of nucleotide sequences
    • LUO, L. F. & BAI, G. Y. (1995). The maximum information principle and the evolution of nucleotide sequences. J. theor. Biol. 174, 131-136.
    • (1995) J. Theor. Biol. , vol.174 , pp. 131-136
    • Luo, L.F.1    Bai, G.Y.2
  • 21
    • 0011114739 scopus 로고
    • The correlation spectrum of nucleotide sequences - How to extract signals from background noise?
    • LUO, L. F. & JI, F. M. (1995). The correlation spectrum of nucleotide sequences - How to extract signals from background noise? Acta Scientiarum Naturalium Universitatis Intramongolicae. 26, 419-426.
    • (1995) Acta Scientiarum Naturalium Universitatis Intramongolicae , vol.26 , pp. 419-426
    • Luo, L.F.1    Ji, F.M.2
  • 22
    • 0025932187 scopus 로고
    • The statistical correlation of nucleotides in protein - Coding DNA sequences
    • LUO, L. F. & LI, H. (1991). The statistical correlation of nucleotides in protein - coding DNA sequences. Bull. Math. Biol. 53, 345-353.
    • (1991) Bull. Math. Biol. , vol.53 , pp. 345-353
    • Luo, L.F.1    Li, H.2
  • 24
    • 84956095995 scopus 로고
    • Fractal dimension of nucleic acid sequences and its relation to evolutionary level
    • LUO, L. F. & TSAI, L. (1988). Fractal dimension of nucleic acid sequences and its relation to evolutionary level. Chinese Physics Letters 5, 421-424.
    • (1988) Chinese Physics Letters , vol.5 , pp. 421-424
    • Luo, L.F.1    Tsai, L.2
  • 26
    • 0023908202 scopus 로고
    • Informational parameters of nucleic acid and molecular evolution
    • LUO, L. F., TSAI, L. & ZHOU, Y. M. (1988). Informational parameters of nucleic acid and molecular evolution. J. theor. Biol. 130, 351-361.
    • (1988) J. Theor. Biol. , vol.130 , pp. 351-361
    • Luo, L.F.1    Tsai, L.2    Zhou, Y.M.3
  • 27
    • 0026704394 scopus 로고
    • Long range correlations within DNA
    • MADDOX, J. (1992). Long range correlations within DNA. Nature 358, 103.
    • (1992) Nature , vol.358 , pp. 103
    • Maddox, J.1
  • 30
    • 0026692128 scopus 로고
    • Uncorrelated DNA walks
    • NEE, S. (1992). Uncorrelated DNA walks. Nature 357, 450.
    • (1992) Nature , vol.357 , pp. 450
    • Nee, S.1
  • 31
    • 0023248465 scopus 로고
    • Theoretical molecular biology: Prospectives and perspectives
    • NUSSINOV, R. (1987). Theoretical molecular biology: Prospectives and perspectives. J. theor. Biol. 125, 219-235.
    • (1987) J. Theor. Biol. , vol.125 , pp. 219-235
    • Nussinov, R.1
  • 33
    • 0026480882 scopus 로고
    • Correlations in intronless DNA
    • PRABHU, V. V. & CLAVERIE, J. M. (1992). Correlations in intronless DNA. Nature 359, 782.
    • (1992) Nature , vol.359 , pp. 782
    • Prabhu, V.V.1    Claverie, J.M.2
  • 34
    • 0020582523 scopus 로고
    • On the informational content of viral DNA
    • ROWE, G. W. & TRAINOR, L. E. H. (1983). On the informational content of viral DNA. J. theor. Biol. 101, 151-170.
    • (1983) J. Theor. Biol. , vol.101 , pp. 151-170
    • Rowe, G.W.1    Trainor, L.E.H.2
  • 35
    • 0030047866 scopus 로고    scopus 로고
    • The modular structure of informational sequences
    • SCHMITT, A. O., EBELING, W. & HERZEL, H. (1996). The modular structure of informational sequences. BioSystems 37, 199-210.
    • (1996) BioSystems , vol.37 , pp. 199-210
    • Schmitt, A.O.1    Ebeling, W.2    Herzel, H.3
  • 36
    • 0024584990 scopus 로고
    • Codon preference and primary sequence structure in protein-coding regions
    • TAVARE, S. & SONG, B. (1989). Codon preference and primary sequence structure in protein-coding regions. Bull. Math. Biol. 51, 95-115.
    • (1989) Bull. Math. Biol. , vol.51 , pp. 95-115
    • Tavare, S.1    Song, B.2
  • 37
    • 0023194889 scopus 로고
    • Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences
    • TRIFONOV, E. N. (1987). Translation framing code and frame-monitoring mechanism as suggested by the analysis of mRNA and 16S rRNA nucleotide sequences. J. Mol. Biol. 194, 643-652.
    • (1987) J. Mol. Biol. , vol.194 , pp. 643-652
    • Trifonov, E.N.1
  • 39
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
    • VOSS, R. F. (1992). Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett. 68, 3805-3808.
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805-3808
    • Voss, R.F.1
  • 41
    • 0025312750 scopus 로고
    • Codon usage tabulated from GenBank data
    • WADA, K., AOTA, S. T., IKEMURA ET AL. (1990). Codon usage tabulated from GenBank data. Nucl. Acids Res. 18, 2367-2411.
    • (1990) Nucl. Acids Res. , vol.18 , pp. 2367-2411
    • Wada, K.1    Aota, S.T.2    Ikemura3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.