Cations in human rhinoviruses

Virology

Volumn 227, Issue 1, 1997, Pages 13-23

  Zhao, Rui ^a   Hadfield, Andrea T ^a,b   Kremer, Marcia J ^a   Rossmann, Michael G ^a  

^a PURDUE UNIVERSITY   (United States)

^b BRANDEIS UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CALCIUM ION; CATION;

ARTICLE; CHEMICAL STRUCTURE; CONTROLLED STUDY; NONHUMAN; PRIORITY JOURNAL; PROTEIN STRUCTURE; RHINOVIRUS; VIRUS MORPHOLOGY;

HUMAN RHINOVIRUS 14; HUMAN RHINOVIRUS SP.; RHINOVIRUS;

EID: 0031555645     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.8301     Document Type: Article

References (40)

1. Abdel-Meguid, S. S., Yamane, T., Fukuyama, K., and Rossmann, M. G. (1981). The location of calcium ions in southern bean mosaic virus. Virology 114, 81-85.
2. Aikens, D. A., and Reilley, C. N. (1963). Formation constants of metal complexes. In "Handbook of Analytical Chemistry" (L. Meites, Ed.), pp. 1-45. McGraw-Hill, New York.
3. Brown, E. A., and Bugg, C. E. (1980). Calcium-binding to nucleotides: Structure of a hydrated calcium salt of inosine 5′-monophosphate. Acta Crystallogr. B36, 2597-2604.
4. Brown, I.D., and Altermatt, D. (1985). Bond-valence parameters obtained from a systematic analysis of the inorganic crystal structure database. Acta Crystallogr. B41, 244-247.
5. Brown, I. D., and Wu, K. K. (1976). Empirical parameters for calculating cation-oxygen bond valences. Acta Crystallogr. B32, 1957-1959.
6. 2+-induced conformational changes. Science 261, 1321-1324.
7. DeSana, J., and Mandell, B. (1977). Studies on the in vitro uncoating of poliovirus. II. Characterization of the membrane-modified particle. Virology 78, 554-566.
8. Durham, A.C. H. (1977). Duhram replies. Nature (London) 271, 187.
9. Durham, A. C. H. (1978). Cation binding and structural changes involved in plant virus disassembly. Hoppe-Seyler's Z. Physiol. Chem. 359, 1047-1050.
10. Filman, D. J., Syed, R., Chow, M., Macadam, A. J., Minor, P.D., and Hogle, J. M. (1989). Structural factors that control conformational transitions and serotype specificity in type 3 poliovirus. EMBO J. 8, 1567-1579.
11. Giranda, V. L., Heinz, B. A., Oliveira, M. A., Minor, I., Kim, K. H., Kolatkar, P. R., Rossmann, M. G., and Rueckert, R. R. (1992). Acid-induced structural changes in human rhinovirus 14: possible role in uncoating. Proc. Natl. Acad. Sci. USA 89, 10213-10217.
12. Glusker, J. P. (1991). Structural aspects of metal liganding to functional groups in proteins. Adv. Prot. Chem. 42, 1-76.
13. Greve, J. M., Davis, G., Meyer, A. M., Forte, C. P., Yost, S. C., Marlor, C. W., Kamarck, M. E., and McClelland, A. (1989). The major human rhinovirus receptor is ICAM-1. Cell 56, 839-847.
14. Hadfield, A. T., Lee, W.-M., Zhao, R., Oliveira, M. A., Minor, I., Rueckert, R. R., and Rossman, M. G. (1997). The refined structure of human rhinovirus 16 at 2-15 Å resolution. Structure, submitted for publication.
15. Hofer, F., Gruenberger, M., Kowalski, H., Machat, H., Huettinger, M., Kuechler, E., and Blaas, D. (1994). Members of the low density lipoprotein receptor family mediate cell entry of a minor-group common cold virus. Proc. Natl. Acad. Sci. USA 91, 1839-1842.
16. Hogle, J., Kirchhausen, T., and Harrison, S. C. (1983). Divalent cation sites in tomato bushy stunt virus. Difference maps at 2.9 Å resolution. J. Mol. Biol. 171, 95-100.
17. Hogle, J. M., Chow, M., and Filman, D. J. (1985). Three-dimensional structure of poliovirus at 2.9 Å resolution. Science 229, 1358-1365.
18. Ilag, L. L., McKenna, R., Yadav, M. P., BeMiller, J. N., Incardona, N. L., and Rossmann, M. G. (1994). Calcium ion-induced structural changes in bacteriophage φX174. J. Mol. Biol. 244, 291-300.
19. Jones, T. A., Zou, J.-Y., Cowan, S.W., and Kjeldgaard, M. (1991). Improved methods for building protein models in electron density maps and the location of errors in these models. Acta Crystallogr. A47, 110-119.
20. Kim, S. (1989). Auto-indexing oscillation photographs. J. Appl. Crystallogr. 22, 53-60.
21. Kim, S., Smith, T. J., Chapman, M. S., Rossmann, M. G., Pevear, D. C., Dutko, F. J., Felock, P. J., Diana, G. D., and McKinlay, M. A. (1989). The crystal structure of human rhinovirus serotype 1A (HRV1A). J. Mol. Biol. 210, 91-111.
22. Lonberg-Holm, K., and Korant, B. D. (1972). Early interaction of rhinoviruses with host cells. J. Virol. 9, 29-40.
23. McKenna, R., Xia, D., Willingmann, P., Ilag, L. L., Krishnaswamy, S., Rossmann, M. G., Olson, N. H., Baker, T. S., and Incardona, N. L. (1992). Atomic structure of single-stranded DNA bacteriophage φX174 and its functional implications. Nature (London) 355, 137-143.
24. McPhalen, C. A., Strynadka, N. C. J., and James, M. N. G. (1991). Calcium-binding sites in proteins: a structural perspective. Adv. Prot. Chem. 42, 77-144.
25. 2+ from satellite tobacco necrosis virus: structure of two EDTA-treated forms. J. Mol. Biol. 212, 331-343.
26. Muckelbauer, J. K., Kremer, M., Minor, I., Diana, G., Dutko, F. J., Groarke, J., Pevear, D. C., and Rossmann, M. G. (1995). The structure of coxsackievirus B3 at 3.5 Å resolution. Structure 3, 653-667.
27. +2-binding sites in proteins. Proc. Natl. Acad. Sci. USA 91, 817-821.
28. Oliveira, M. A., Zhao, R., Lee, W. M., Kremer, M. J., Minor, I., Rueckert, R. R., Diana, G. D., Pevear, D. C., Dutko, F. J., McKinlay, M. A., and Rossmann, M. G. (1993). The structure of human rhinovirus 16. Structure 1, 51-68.
29. Pattanayek, R., Elrod, M., and Stubbs, G. (1992). Characterization of a putative calcium-binding site in tobacco mosaic virus. Proteins 12, 128-132.
30. Robinson, I. K., and Harrison, S. C. (1982). Structure of the expanded state of tomato bushy stunt virus. Nature (London) 297, 563-568.
31. Rossmann, M. G. (1979). Processing oscillation diffraction data for very large unit cells with an automatic convolution technique and profile fitting. J. Appl. Crystallogr. 12, 225-238.
32. Rossmann, M. G., Arnold, E., Erickson, J. W., Frankenberger, E. A., Griffith, J. P., Hecht, H. J., Johnson, J. E., Kamer, G., Luo, M., Mosser, A. G., Rueckert, R. R., Sherry, B., and Vriend, G. (1985). Structure of a human common cold virus and functional relationship to other picornaviruses. Nature (London) 317, 145-153.
33. Rossmann, M. G., Leslie, A. G. W., Abdel-Meguid, S. S., and Tsukihara, T. (1979). Processing and post-refinement of oscillation camera data. J. Appl. Crystallogr. 12, 570-581.
34. Rossmann, M. G., McKenna, R., Tong, L., Xia, D., Dai, J., Wu, H., Choi, H. K., and Lynch, R. E. (1992). Molecular replacement real-space averaging. J. Appl. Crystallogr. 25, 166-180.
35. Smith, T. J., Kremer, M. J., Luo, M., Vriend, G., Arnold, E., Kamer, G., Rossmann, M. G., McKinlay, M. A., Diana, G. D., and Otto, M. J. (1986). The site of attachment in human rhinovirus 14 for antiviral agents that inhibit uncoating. Science 233, 1286-1293.
36. Staunton, D. E., Merluzzi, V. J., Rothlein, R., Barton, R., Marling, S. D., and Springer, T. A. (1989). A cell adhesion molecule, ICAM-1, is the major surface receptor for rhinoviruses. Cell 56, 849-853.
37. Uncapher, C. R., DeWitt, C. M., and Colonno, R. J. (1991). The major and minor group receptor families contain all but one human rhinovirus serotype. Virology 180, 814-817.
38. Vedani, A., and Huhta, D. W. (1990). A new force field for modeling metalloproteins. J. Amer. Chem. Soc. 112, 4759-4767.
39. Yazaki, K. (1981). Electron microscopic studies of bacteriophage φX174 intact and 'eclipsing' particles, and the genome by the staining and shadowing method. J. Virol. Methods 2, 159-167.
40. Zhao, R., Pevear, D. C., Kremer, M. J., Giranda, V. L., Kofron, J., Rossman, M. G., and Kuhn, R. J. (1996). The structure of human rhinovirus 3 at 3.0 Å resolution. Structure, 4, 1205-1220.