Analysis of the 3' terminal sequence recognized by the rift valley fever virus transcription complex in its ambisense S segment

Virology

Volumn 227, Issue 1, 1997, Pages 189-197

  Prehaud, Christophe ^a,b   Lopez, Nora ^a   Blok, Marinus J ^a   Obry, Véronique ^a   Bouloy, Michèle ^a  

^a INSTITUT PASTEUR   (France)

^b Instituto Nacional de Microbiologia Dr Carlos GMalbran   (Argentina)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BUNYAVIRUS; HUMAN; NONHUMAN; NUCLEOTIDE REPEAT; PRIORITY JOURNAL; RIFT VALLEY FEVER BUNYAVIRUS; RNA SEQUENCE; TRANSCRIPTION REGULATION;

ORTHOBUNYAVIRUS; PHLEBOVIRUS; RIFT VALLEY FEVER VIRUS; VACCINIA; VACCINIA VIRUS;

EID: 0031555640     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1996.8324     Document Type: Article

References (51)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A., and Struhl, K. (1987). Introduction of DNA into mammalian cells: Uses of fusion genes in mammalian transfection. In "Current Protocols in Molecular Biology," pp. 9.17-9.19. Wiley, New York.
2. Bouloy, M. (1991). Bunyaviridae: Genome organization and replication strategies. Adv. Virus Res. 40, 235-275.
3. Calain, P., and Roux, L. (1993). The rule of six, a basic feature for efficient replication of Sendai virus defective interfering RNA. J. Virol. 67, 4822-4830.
4. Caplen, H., Peters, C. J., and Bishop, D. H. L. (1985). Mutagen-directed attenuation of Rift Valley fever virus as a method for vaccine development. J. Gen. Virol. 66, 2271-2277.
5. Cianci, C., Tiley, L., and Krystal, M. (1995). Differential activation of the influenza virus polymerase via template RNA binding. J. Virol. 69, 3995-3999.
6. Collett, M. S., Purchio, A. F., Keegan, K., Frazier, S., Hays, W., Anderson, D. K., Parker, M. D., Schmaljohn, C., Schmidt, J., and Dalrymple, J. M. (1985). Complete nucleotide sequence of the M RNA segment of Rift Valley fever virus. Virology 144, 228-245.
7. Conzelmann, K. K., and Schnell, M. (1994). Rescue of synthetic genomic RNA analogs of rabies virus by plasmid-encoded proteins. J. Virol. 68, 713-719.
8. De, B. P., and Banerjee, A. K. (1993). Rescue of synthetic analogs of genome RNA of human parainfluenza virus type 3. Virology 196, 344-348.
9. de la Luna, S., Martin, J., Portela, A., and Ortin, J. (1993). Influenza virus naked RNA can be expressed upon transfection into cells co-expressing the three subunits of the polymerase and the nucleoprotein from simian virus 40 recombinant viruses. J. Gen. Virol. 74, 535-539.
10. Devereux, J., Haeberli, P., and Smithies, O. (1984). A comprehensive set of sequence analysis programs for the VAX. Nucleic Acids Res. 12, 387-395.
11. Dunn, E. F., Pritlove, D. C., Jin, H., and Elliott, R. M. (1995). Transcription of a recombinant Bunyavirus RNA template by transiently expressed Bunyavirus proteins. Virology 211, 133-143.
12. Elliott, R. M., Dunn, E., Simons, J. F., and Pettersson, R. F. (1992). Nucleotide sequence and coding strategy of the Uukuniemi virus L RNA segment. J. Gen. Virol. 73, 1745-1752.
13. Elliott, R. M., Schmaljohn, C. S., and Collett, M. S. (1991). Bunyaviridae genome structure and gene expression. Curr. Top. Microbiol. Immunol. 169, 91-141.
14. Fodor, E., Pritlove, D. C., and Brownlee, G. G. (1994). The influenza virus panhandle is involved in the initiation of transcription. J. Virol. 68, 4092-4096.
15. Fodor, E., Seong, B. L., and Brownlee, G. G. (1993). Photochemical cross-linking of influenza A polymerase to its virion RNA promoter defines a polymerase binding site at residues 9 to 12 of the promoter. J Gen. Virol. 74, 1327-1333.
16. Garcia-Sastre, A., and Palese, P. (1993). Genetic manipulation of negative-strand RNA virus genomes. Annu. Rev. Microbiol. 47, 765-790.
17. Garcin, D., Lezzi, M., Dobbs, M., Elliott, R. M., Schaljohn, C., Kang, C. Y., and Kolakofsky, D. (1995). The 5′ ends of Hantaan virus (Bunyaviridae)RNAs suggest a prime-and-realign mechanism for the initiation of RNA synthesis. J. Virol. 69, 5754-5762.
18. Giorgi, C., Accardi, L., Nicoletti, L., Gro, M. C., Takehara, K., Hilditch, C., Morikawa, S., and Bishop, D. H. (1991). Sequences and coding strategies of the S RNAs of Toscana and Rift Valley fever viruses compared to those of Punta Toro, Sicilian Sandfly fever, and Uukuniemi viruses. Virology 180, 738-753.
19. Grosfeld, H., Hill, M. G., and Collins, P. L. (1995). RNA replication by Respiratory Syncytial virus (RSV) is directed by the N, P, and L proteins; transcription also occurs under these conditions but requires RSVsuperinfection for efficient synthesis of full-length mRNA. J. Virol. 69, 5677-5686.
20. Hacker, D., Rochat, S., and Kolakofsky, D. (1990). Anti-mRNAs in La Crosse bunyavirus-infected cells. J. Virol. 64, 5051-5057.
21. Hagen, D., Chung, T. D., Butcher, J. A., and Krystal, M. (1994). Recombinant influenza virus polymerase: Requirement of both 5′ and 3′ viral ends for endonuclease activity. J. Virol. 68, 1509-1515.
22. Huang, T. S., Palese, P., and Krystal, M. (1990). Determination of influenza virus proteins required for genome replication. J. Virol. 64, 5669-5673.
23. Iapalucci, S., Lopez, N., Rey, O., Zakin, M. M., Cohen, G. N., and Franze-Fernandez, M. T. (1989a). The 5′ region of Tacaribe virus LRNA encodes a protein with a potential metal binding domain. Virology 173, 357-361.
24. Iapalucci, S., Lopez, R., Rey, O., Lopez, N., Franze-Fernandez, M. T., Cohen, G., Lucero, M., Ochoa, A., and Zakin, M. M. (1989b). Tacaribe virus L gene encodes a protein of 2210 amino acid residues. Virology 170, 40-47.
25. Li, X, and Palese, P. (1992). Mutational analysis of the promoter required for influenza virus virion RNA synthesis. J. Virol. 66, 4331-4338.
26. Lopez, N., Muller, R., Prehaud, C., and Bouloy, M. (1995). The L protein of Rift Valley fever virus can rescue viral ribonucleoproteins and transcribe synthetic genome-like RNA molecules. J. Virol. 69,
27. Luytjes, W., Krystal, M., Enami, M., Pavin, J. D., and Palese, P. (1989). Amplification, expression, and packaging of foreign gene by influenza virus. Cell 59, 1107-1113
28. Mena, I., De la Luna, S., Albo, C., Martin, J., Nieto, A., Ortin, J., and Portela, A. (1994). Synthesis of biologically active influenza virus core proteins using a vaccinia virus-T7 RNA polymerase expression system. J. Gen. Virol. 75, 2109-2114.
29. Morse, S. S. (1993). "Emerging Viruses." Oxford Univ. Press, New York.
30. Muller, R., Argentini, C., Bouloy, M., Prehaud, C., and Bishop, D. H. (1991). Completion of the genome sequence of Rift Valley fever phlebovirus indicates that the L RNA is negative sense and codes for a putative transcriptase-replicase [corrected] [published erratum appears in Nucleic Acids Res. 1992 Dec 11; 20(23),6440]. Nucleic Acids Res. 19, 5433.
31. Muller, R., Poch, O., Delarue, M., Bishop, D. H., and Bouloy, M. (1994). Rift Valley fever virus L segment: correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J. Gen. Virol. 75, 1345-1352.
32. Murphy, F. A., and Nathanson, N. (1994). The emergence of new virus diseases: an overview. Semin. Virol. 5, 87-102.
33. Palese, P. (1995). Genetic engineering of infectious negative-strand RNA viruses. Trends Microbiol. 3, 123-125.
34. Parvin, J. D., Palese, P., Honda, A., Ishihama, A., and Krystal, M. (1989). Promoter analysis of influenza virus RNA polymerase. J. Virol. 63, 5142-5152.
35. Pattnaik, A. K., Ball, L. A., Le Grone, A. W., and Wertz, G. W. (1992). Infectious defective interfering particles of VSV from transcripts of a cDNA clone. Cell 69, 1011-1020.
36. Perbal, B. (1988). "A Practical Guide to Molecular Cloning." Wiley-Interscience, New York.
37. Peters, C. J., and Meegan, J. M. (1989). Rift Valley fever. In "CRC Handbook Series in Zoonoses" (G. Beran, Ed.), pp. 403-420. CRC Press, Boca Raton, FL.
38. Piccone, M. E., Fernandez-Sesma, A., and Palese, P. (1993). Mutational analysis of the influenza virus vRNA promoter. Virus Res. 28, 99-112.
39. Raju, R., and Kolakofsky, D. (1987). Unusual transcripts in La Crosse virus-infected cells and the site for nucleocapsid assembly. J. Virol. 61, 667-672.
40. Raju, R., and Kolakofsky, D. (1989). The ends of La Crosse virus genome and antigenome RNAs within nucleocapsids are baise paired. J. Virol. 63, 122-128.
41. Salvato, M., Shimomaye, E., and Oldstone, M. B. (1989). The primary structure of the Lymphocytic Choriomeningitis virus L gene encodes a putative RNA polymerase. Virology 169, 377-384.
42. Salvato, M. S., and Shimomaye, E. M. (1989). The complete sequence of Lymphocytic Choriomeningitis virus reveals a unique RNA structure and a gene for a zinc finger protein. Virology 173, 1-10.
43. Schmaljohn, C. S. (1996). Bunyaviridae: The viruses and their replication. In "Fields Virology" (K.D.M. and B. N. Fields, Eds.), pp. 1447-1471. Raven Press, New York.
44. Seong, B. L., and Brownlee, G. G. (1992). Nucleotides 9 to 11 of the influenza A virion RNA promoter are crucial for activity in vitro. J. Gen. Virol. 73, 3115-3124.
45. Stillman, E. A., Rose, J. K., and Whitt, M. A. (1995). Replication and amplification of novel Vesicular Stomatitis virus minigenomes encoding viral structural proteins. J. Virol. 69, 2946-2953.
46. Takehara, K., Min, M. K., Battles, J. K., Sugiyama, K., Emery, V. C., Dalrymple, J. M., and Bishop, D. H. L. (1989). Identification of mutations in the M RNA of a candidate vaccine strain of Rift Valley fever virus. Virology 169, 452-457.
47. Thompson, J. D., Higgins, D. G., and Gibson, T. J. (1994). CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22, 4673-4680.
48. Tiley, L. S., Hagen, M., Matthews, J. T., and Krystal, M. (1994). Sequence-specific binding of the influenza virus RNA polymerase to sequences located at the 5′ ends of the viral RNAs. J. Virol. 68, 5108-5116.
49. Vialat, P., and Bouloy, M. (1992). Germiston virus transcriptase requires active 40S ribosomal subunits and utilizes capped cellular RNAs. J. Virol. 66, 685-693.
50. Yu, Q., Hardy, R. W., and Wertz, G. W. (1995). Functional cDNA clones of the human respiratory syncytial (RS) virus N, P, and L proteins support replication of RS virus genomic RNA analogs and define minimal trans-acting requirements for RNA replication. J. Virol. 69, 2412-2419.
51. Zuker, M., and Stiegler, P. (1981). Optimal computer folding of large RNA sequences using thermodynamics and auxiliary information. Nucleic Acids Res. 9, 133-148.