Sequence comparison via alignment and Gibbs sampling: A formal analysis of the emergence of the modern sociological article

Sociological Methodology

Volumn 27, Issue 1, 1997, Pages 47-87

  Abbott, Andrew ^a   Barman, Emily ^a  

^a UNIVERSITY OF CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 0031506602     PISSN: 00811750     EISSN: None     Source Type: Journal    
DOI: 10.1111/1467-9531.271019     Document Type: Article

References (61)

1. Abbott, Andrew. 1992. "From Causes to Events." Sociological Methods and Research 20:428-55.
2. _. 1995a. "Sequence Analysis." Annual Review of Sociology 21:93-113.
3. _. 1995b. "On Dijkstra and Taris: The Scope of Alignment Methods." Sociological Methods and Research 24:232-43.
4. _. 1996a. quot;AJS: The Growth of an Institution." Unpublished paper, University of Chicago.
5. _. 1996b. "On the Concept of Turning Point." In Comparative Social Research, edited by F. Engelstad et al. Greenwich CN: JAI Press. Forthcoming.
6. Abbott, Andrew, and Alexandra Hrycak. 1990. "Measuring Sequence Resemblance." American Journal of Sociology 96:144-85.
7. American Journal of Sociology. 1966. Cumulative Index to the American Journal of Sociology, 1895-1965. Chicago: University of Chicago Press.
8. Assadi, B. 1987. "The Social Construction of Knowledge in American Sociology." Ph.D. diss., Howard University.
9. Bakanic, Von, Clark McPhail, and R. J. Simon. 1987. "The Manuscript Review and Decision-Making Process." American Sociological Review 52:631-42.
10. Barthes, Roland. 1974. S/Z. New York: Hill and Wang.
11. Bazerman, Charles. 1988. Shaping Written Knowledge. Madison: University of Wisconsin Press.
12. Boguski, Mark S. 1992. "Computational Sequence Analysis Revisited." Journal of Lipid Research 33:957-74.
13. Buehler, C., Gary Hesser, and Andrew J. Weigert. 1972. "A Study of Articles on Religion in Major Sociology Journals." Journal for the Scientific Study of Religion 11:165-70.
14. Casella, George, and Edward I. George. 1992. "Explaining the Gibbs Sampler." American Statistician 46:167-74.
15. Champion, D. J., and M. F. Morris. 1974. "A Content Analysis of Book Reviews in ASR and Social Forces." American Journal of Sociology 78:1256-65.
16. Clyne, M. 1987. "Cultural Differences in the Organization of Academic Texts." Journal of Pragmatics 11:211-47.
17. Connors, R. J. 1985. "The Rhetoric of Explanation." Written Communication 2:49-72.
18. Cox, D. R., and H. D. Miller. 1965. The Theory of Stochestic Processes London: Chapman and Hall.
19. Everitt, Brian S. 1993. Cluster Analysis London: Edwin Arnold.
20. Forrezst, J., and Andrew Abbott. 1990. "The Optimal Matching Method for Studying Anthropological Sequence Data." Journal of Quantitative Anthropology 2:151-70.
21. Garnett R. A. 1988. "The Study of War." American Sociologist 19:270-82.
22. Gelfand Alan E., Susan E. Hills, Amy Racine-Poon, and A. F. M. Smith. 1990. "Illustration of Bayesian Inference in Normal Data Models Using Gibbs Sampling." Journal of the American Sztatistical Association 85:972-85.
23. Gelfand Alan E., and Adrian F. M. Smith. 1990. "Sampling-based Approaches to Calculating Marginal Densities." Journal of the American Statistical Association 85;398-409.
24. Geman, Stuart, and Donald Geman. 1984. "Stochastic Relaxation, Gibbs Distributions, and Bayesian Restoration of Images." IEEE Transactions on Pattern Analysis and Machine Intelligence 6:721-41.
25. Gilks, Walter R., Sylvia Richardson, and David J. Spiegelhalter, eds. 1996. Markov Chain Monte Carlo in Practice. London: Chapman and Hall.
26. Glenn, Norval D. 1971. "American Sociologists' Evaluations of 63 Journals." American Sociologist 6:298-303.
27. Gotoh, O. 1993. "Optimal Alignment Between Groups of Sequences and Its Application to Multiple Sequence Alignment." CABIOS 9:361-70.
28. Gribskov, Michael R., and John Devereux, eds. 1991. Sequence Analysis Primer. New York: Freeman.
29. Gusfield, D. 1993. "Efficient Algorithms for Multiple Sequence Alignment with Guaranteed Error Bounds." Bulletin of Mathematical Biology 55:141-54.
30. Gusfield, J. 1981. The Culture of Public Problems. Chicago: University of Chicago.
31. Heniko'ff, S., and J. G. Henikoff. 1994. "Position-Based Sequence Weights." Journal of Molecular Biology 243:574-78.
32. Ishikawa, M., T. Toya, M. Hoshida, K. Nitta, A. Ogiwara, and M. Kanehisa. 1993. "Multiple Sequence Alignment by Parallel Simulated Annealing." CABIOS 9:267-73.
33. Jain, Anil K., and Richard C. Dubes. 1988. Algorithms for Clustering Data Englewood Cliffs, NJ: Prentice Hall.
34. Karlin, Samuel, P. Bucher, V. Brendel, and S. F. Altschul. 1991. "Statistical Methods and Insights for Protein and DNA Sequences." Annual Review of Biophysics and Biophysical Chemistry 20:175-203.
35. Kinloch, G. C. 1988. "American Sociology's Changing Interests as Reflected in Two Leading Journals." American Sociologist 19:181-94.
36. Kircz J. G. 1991. "Rhetorical Structure of Scientific Articles." Journal of Documentation 47: 354-472.
37. Kirkpatrick, S., C. D. Gelatt, and M. P. Vecci. 1983. "Optimization by Simulated Annealing." Science 220:671-81.
38. Kong Augustine, Jun S. Liu. and Wing H. Wong. 1994. "Sequential Imputations and Bayesian Missing Data Problems." Journal of the American Statistical Associate 89:278-93
39. Lawrence Charles E., Stephen F. Altschul, Mark S. Boguski, Jun S. Liu, Andrew F. Neuwald, and John C. Wooton. 1993. "Detecting Subtle Sequence Signals." Science 262:208-14.
40. Liu, Jun S. 1991. Correlation Structure and Convergence Rate of the Gibbs Sampler. Unpublished Ph.D. diss., University of Chicago.
41. Liu, Jun S., Andrew F. Neuwald, and Charles E. Lawrence. 1995. "Bayesian Models for Local Sequence Alignment and Gibbs Sampling Strategies." Journal of the American Statistical Association 90:1156-70.
42. Liu, Jun S., W. H. Wong, and A. Kong. 1994. "Covariance Structure of the Gibbs Sampler with Applications to the Comparisons of Estimators and Augmentation Schemes." Biometrika 81:27-40.
43. _. 1995. "Covariance Structure and Convergence Rate of the Gibbs Sample-30 with Various Scans." Journal of the Royal Statistical Society, Series B, 57:157-69.
44. McCartney, James L. 1970. "On Being Scientific." American Sociologist 5:30-35.
45. McCloskey, Donald. 1985. The Rhetoric of Economics. Madison: University of Wisconsin Press.
46. Metropolis, N., and S. Ulam. 1949. "The Monte Carlo Method." Journal of the American Statistical Association 44:335-41.
47. Metropolis, N., A. W. Rosenbluth, M. N. Rosenbluth, A. H. Teller, and E. Teller. 1953. "Equation of State Calculations by Fast Computing Machines." Journal of Chemical Physics 21:1087-92.
48. Mullins, N., W. Snizek, and K. Oehler. 1988. "The Structural Analysis of a Scientific Paper." Handbook of Quantitative Studies of Science and Technology, edited by A. F. I. Raam, 81-105, New York: Elsevier.
49. Murray, S. O. 1988. "The Reception of Anthropological Work in Sociology Journals, 1922-1951." Journal of the History of the Behavioral Sciences 24:135-51.
50. Myers, G. 1990. Writing Biology. Madison: University of Wisconsin Press.
51. Needleman, S. B., and C. D. Wunsch. 1970. "A General Method Applicable to the Search for Similarities in the Amino-Acid Sequence of Two Proteins." Journal of Molecular Biology 48:443-53.
52. Neuwald, Andrew F., Jun S. Liu, and Charles E. Lawrence. 1995. "Gibbs Motif Sampling." Protein Science 4:1618-32.
53. O'Neill, J. 1981. "The Literary Production of Natural and Social Science Inquiry." Canadian Journal of Sociology 6:105-20.
54. Page, Charles H. 1981. "The American Sociological Review, 1958-1960." American Sociologist 14:43-47.
55. Sankoff, D., and Joseph B. Kruskal. 1983. Time Warps, String Edits, and Macromolecules. Reading, MA: Addison-Wesley.
56. Smalley, T. N. 1981. "Trends in Sociology Literature and Research." Behavioral and Social Sciences Librarian 2:1-19.
57. Tanner, Martin A. 1991. Tools for Statistical Inference. New York: Springer.
58. Tanner, Martin A., and Wing H. Wong. 1987. "The Calculation of Posterior Distributions by Data Augmentation." Journal of the American Statistical Association 82:528-40.
59. Teevan, J. J. 1980. "Journal Prestige and Quality of Sociological Articles." American Sociologist 15:109-12.
60. Vingron, Martin, and Michael S. Waterman. 1994. "Sequence Analysis and Penalty Choice." Journal of Molecular Biology 235:1-12.
61. Vingron, Martin, and Peter R. Sibbald. 1993. "Weighting in Sequence Space." Proceedings of the National Academy of Science 90:8777-81.