Internal Motions of a Protein and Surrounding Water Molecules

Journal of the Physical Society of Japan

Volumn 66, Issue 9, 1997, Pages 2936-2947

  Yoshioki, Shuzo ^a  

^a KUMAMOTO NATIONAL COLLEGE OF TECHNOLOGY   (Japan)

Author keywords

Hydrogen bonding; Internal motions; Normal mode analysis; Protein solvation models; Thermal ellipsoid; Vibrational frequency; Water molecule

Indexed keywords

EID: 0031483439     PISSN: 00319015     EISSN: None     Source Type: Journal    
DOI: 10.1143/JPSJ.66.2936     Document Type: Article

References (28)

1. I. D. Kuntz and W. Kauzmann: Adv. Prot. Chem. 28 (1973) 239.
2. J. T. Edsall and H. A. Mackenzie: Adv. Biophys. 10 (1978) 137.
3. J. T. Edsall and H. A. Mackenzie: Adv. Biophys. 16 (1983) 53.
4. J. A. Rupley, P. H. Yang and G. Tollin: ACS Symp. 127, Water in Polymers, ed. S. P. Rowland (American Chemical Society, Washington, DC, 1980) p. 111.
5. J. L. Finney, J. M. Goodfellow and P. L. Poole: Structural Molecular Biology, ed. D. B. Davies, S. Danyluk and W. Saenger (Plenum, New York, 1982) p. 387.
6. B. Jacrot, S. Cusack, A. J. Dianoux and D. M. Engelman: Nature 300 (1982) 84.
7. P. L. Poole and J. L. Finney: Biopolymers 22 (1983) 255.
8. P. L. Poole and J. L. Finney: Biopolymers 23 (1984) 1647.
9. J. Smith, S. Cusack, P. Poole and J. Finney: J. Biomol. Struct. Dynam. 4(4) (1987) 583.
10. B. F. Rasmussen, A. M. Stock, D. Ringe and G. A. Petsko: Nature 357 (1992) 423.
11. S. Yoshioki: J. Comp. Chem. 15 (1994) 684.
12. S. Yoshioki: J. Comp. Chem. 17 (1996) 878.
13. S. Yoshioki: J. Phys. Soc. Jpn. 66 (1997) 2927.
14. W. F. van Gunsteren and H. J. C. Berendsen: Groningen Molecular Simulation (GROMOS) Library, BIOMOS (University of Groningen, Groningen, 1987).
15. F. A. Momany, L. M. Carruthers, R. F. McGuire and H. A. Scheraga: J. Phys. Chem. 78 (1974) 1595.
16. D. M. Ferguson: J. Comp. Chem. 16 (1995) 501.
17. L. X. Dang and B. M. Pettitt: J. Phys. Chem. 91 (1987) 3349.
18. E. B. Wilson: J. Chem. Phys. 7 (1939) 1047.
19. E. B. Wilson: J. Chem. Phys. 9 (1941) 76.
20. P. E. Gill, W. Murray and M. H. Wright: Practical Optimization (Academic Press, London, 1981) p. 105.
21. C. K. Johnson: ORTEP: a Fortran Thermal Ellipsoid Plot Program, ORNL-3794 (Oak Ridge National Laboratory, Oak Ridge, 1965).
22. S. H. Chen, K. Toukan, C. K. Loong, D. L. Price and J. Teixeira: Phys. Rev. Lett. 53 (1984) 1360.
23. D. A. Estrin, L. Paglieri, G. Corongiu and E. dementi: J. Phys. Chem. 100 (1996) 8701.
24. K. Kim, K. D. Jordan and T. S. Zwier: J. Am. Chem. Soc. 116 (1994) 11568.
25. U. Buontempo, G. C. Gareri and P. Fasella: Biopolymers 11 (1981) 14.
26. M. Falk, A. G. Poole and C. G. Goymour: Can. J. Chem. 48 (1970) 1536.
27. R. Cooke and I. D. Kuntz: Ann. Rev. Biophys. Bioeng. 3 (1974) 95.
28. J. R. Hansen and W. Yellin: Water Structure at the Water-Polymer Interface, ed. H. G. Jellinek (Plenum, New York, 1972) p. 19.