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Volumn 7, Issue 6, 1997, Pages 784-791

Comparative painting of mammalian chromosomes

Author keywords

[No Author keywords available]

Indexed keywords

CHROMOSOME BREAKAGE; CHROMOSOME MAP; CHROMOSOME PAINTING; CHROMOSOME REARRANGEMENT; COSMID; CYTOGENETICS; FLUORESCENCE IN SITU HYBRIDIZATION; KARYOTYPING; NONHUMAN; PLACENTAL MAMMALS; PRIORITY JOURNAL; REVIEW; SYNTENY; YEAST ARTIFICIAL CHROMOSOME;

EID: 0031474863     PISSN: 0959437X     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0959-437X(97)80041-X     Document Type: Article
Times cited : (105)

References (42)
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    • Bigoni F, Koehler U, Stanyon R, Ishida T, Wienberg J. Fluorescence in situ hybridization establishes homology between human and Silvered Leaf monkey chromosomes reveals reciprocal translocations between chromosomes homologous to human Y/5, 1/19, and 6/16 and delineates a X(1)X(2)Y(1)Y(2)/X(1) X(1)X(2)X(2) sex-chromosome system. Am J Phys Anthropol. 102:1997;315-327.
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    • Mapping homology between human and black and white Colobine monkey chromosomes by fluorescence in situ hybridization
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    • Reciprocal chromosome painting reveals homologies between human and Prosimian (Eulemur macaco macaco and Eulemur fulvus mayottensis) karyotypes
    • of outstanding interest. of special interest
    • of outstanding interest Müller S, Stanyon R, O'Brien PCM, Ferguson-Smith MA, Wienberg J. Reciprocal chromosome painting reveals homologies between human and Prosimian (Eulemur macaco macaco and Eulemur fulvus mayottensis) karyotypes. of special interest Cytogenet Cell Genet. 1997; This paper not only describes the reciprocal painting of a Lemur and the human karyotype but also describes a new set of painting probes that now can be used to very efficiently study Prosimian chromosome evolution in a multicolour format (see annotation [31]).
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    • Müller, S.1    Stanyon, R.2    O'Brien, P.C.M.3    Ferguson-Smith, M.A.4    Wienberg, J.5
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    • Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting
    • of special interest. This publication revealed, by direct observation, widespread conservation of the genome organisation between two mammalian orders and confirmed that >90% of the homologous genes already mapped to both species. In the cat/human reciprocal hybridisations, ~30 syntenic segments were identified and the number of translocations can be estimated on the order of one new translocation per 10 million years. This paper also demonstrated how a reciprocal painting approach is fundamental for unambiguous ascertainment of chromosome homology and comparative gene mapping between distantly related species.
    • Wienberg J, Stanyon R, Nash WG, O'Brien PCM, Yang F, O'Brien SJ, Ferguson-Smith MA. Conservation of human vs. feline genome organization revealed by reciprocal chromosome painting. of special interest Cytogenet Cell Genet. 77:1997;211-217 This publication revealed, by direct observation, widespread conservation of the genome organisation between two mammalian orders and confirmed that >90% of the homologous genes already mapped to both species. In the cat/human reciprocal hybridisations, ~30 syntenic segments were identified and the number of translocations can be estimated on the order of one new translocation per 10 million years. This paper also demonstrated how a reciprocal painting approach is fundamental for unambiguous ascertainment of chromosome homology and comparative gene mapping between distantly related species.
    • (1997) Cytogenet Cell Genet , vol.77 , pp. 211-217
    • Wienberg, J.1    Stanyon, R.2    Nash, W.G.3    O'Brien, P.C.M.4    Yang, F.5    O'Brien, S.J.6    Ferguson-Smith, M.A.7
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    • Hameister H, Klett Ch, Bruch J, Dixkens Ch, Vogel W. Zoo-FISH analysis: the American mink (Mustela vision) closley resembles the cat karyotype. of special interest Chromosome Res. 5:1997;5-11 See annotation [15].
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    • Hameister, H.1    Klett, C.2    Bruch, J.3    Dixkens, C.4    Vogel, W.5
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    • Frönicke, L.1    Müller-Navia, J.2    Romansky, K.3    Scherthan, H.4
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    • Comparative chromosome painting in mammals: Human and the Indian Muntjac (Muntjacus muntjak vaginalis)
    • of special interest. Although the muntjac deer is unique among mammals with respect to its low chromosome number (2N=6,7), only ~49 homologous autosomal chromosome segments were identified, which is in the range of the numbers found in other ungulates and carnivores recently analysed by chromosome painting (see also Table 1).
    • Yang F, Müller S, Just R, Ferguson-Smith MA, Wienberg J. Comparative chromosome painting in mammals: human and the Indian Muntjac (Muntjacus muntjak vaginalis). of special interest Genomics. 39:1997;396-401 Although the muntjac deer is unique among mammals with respect to its low chromosome number (2N=6,7), only ~49 homologous autosomal chromosome segments were identified, which is in the range of the numbers found in other ungulates and carnivores recently analysed by chromosome painting (see also Table 1).
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    • Yang, F.1    Müller, S.2    Just, R.3    Ferguson-Smith, M.A.4    Wienberg, J.5
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    • of special interest. See annotation [18].
    • Frönicke L, Scherthan H. Zoo-fluorescence in situ hybridization analysis of human and Indian muntjac karyotypess (Muntjacus muntjak vaginalis) reveals satellite DNA clusters at the margins of conserved syntenic segments. of special interest Chromosome Res. 5:1997;254-261 See annotation [18].
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    • Frönicke, L.1    Scherthan, H.2
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    • Human and porcine correspondance of chromosome segments using bidirectional chromosome painting
    • of special interest. Although only about two thirds of the karyotypes have been painted in both directions, the results amply demonstrate the power of the reciprocal hybridisation approach. (See also annotation [15]).
    • Goureau A, Yerle M, Schmitz A, Riquet J, Milan D, Pinton P, Gellin J. Human and porcine correspondance of chromosome segments using bidirectional chromosome painting. of special interest Genomics. 36:1996;252-262 Although only about two thirds of the karyotypes have been painted in both directions, the results amply demonstrate the power of the reciprocal hybridisation approach. (See also annotation [15]).
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    • Goureau, A.1    Yerle, M.2    Schmitz, A.3    Riquet, J.4    Milan, D.5    Pinton, P.6    Gellin, J.7
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    • Genetic analysis by chromosome sorting and painting: Phylogenetic and diagnostic applications
    • of special interest. The flow-sorted material reported here (and in [24-28]) includes species from various placental mammalian orders and from marsupials and monotremes and will be essential in the study of mammalian and vertebrate chromosome evolution. This will be especially helpful for analysing chromosome rearrangements within the respective order because hybridisation efficiency and resolution will be considerably higher than when using probes derived from different orders.
    • Ferguson-Smith MA. Genetic analysis by chromosome sorting and painting: phylogenetic and diagnostic applications. of special interest Europ J Hum Genet. 5:1997;253-265 The flow-sorted material reported here (and in [24-28]) includes species from various placental mammalian orders and from marsupials and monotremes and will be essential in the study of mammalian and vertebrate chromosome evolution. This will be especially helpful for analysing chromosome rearrangements within the respective order because hybridisation efficiency and resolution will be considerably higher than when using probes derived from different orders.
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    • Ferguson-Smith, M.A.1
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    • Identification of complex chromosome rearrangements in the gibbon (Hylobates klossii) by fluorescent in situ hybridization (FISH) of a human chromosome 2q specific microlibrary, yeast artificial chromosomes and reciprocal chromosome painting
    • of special interest. The authors of this paper describe various approaches now available in molecular cytogenetics to study complex rearrangements in the karyotype of a gibbon species. The results clearly demonstrate that these tools will be able to finely map many chromosome changes in the evolution of two species.
    • Arnold N, Stanyon R, Jauch A, O'Brien P, Wienberg J. Identification of complex chromosome rearrangements in the gibbon (Hylobates klossii) by fluorescent in situ hybridization (FISH) of a human chromosome 2q specific microlibrary, yeast artificial chromosomes and reciprocal chromosome painting. of special interest Cytogenet Cell Genet. 74:1996;80-85 The authors of this paper describe various approaches now available in molecular cytogenetics to study complex rearrangements in the karyotype of a gibbon species. The results clearly demonstrate that these tools will be able to finely map many chromosome changes in the evolution of two species.
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    • Arnold, N.1    Stanyon, R.2    Jauch, A.3    O'Brien, P.4    Wienberg, J.5
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    • A reappraisal of the tandem fusion theory of karyotype evolution in the Indian muntjac using chromosome painting
    • of special interest. See annotation [22].
    • Yang F, O'Brien PCM, Wienberg J, Ferguson-Smith MA. A reappraisal of the tandem fusion theory of karyotype evolution in the Indian muntjac using chromosome painting. of special interest Chromosome Res. 5:1997;109-117 See annotation [22].
    • (1997) Chromosome Res , vol.5 , pp. 109-117
    • Yang, F.1    O'Brien, P.C.M.2    Wienberg, J.3    Ferguson-Smith, M.A.4
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    • Evolution of the black muntjac (Muntiacus crinifrons) karyotype revealed by molecular cytogenetics
    • of special interest. See annotation [22].
    • Yang F, O'Brien PCM, Wienberg J, Ferguson-Smith MA. Evolution of the black muntjac (Muntiacus crinifrons) karyotype revealed by molecular cytogenetics. of special interest Cytogenet Cell Genet. 76:1997;159-163 See annotation [22].
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    • Yang, F.1    O'Brien, P.C.M.2    Wienberg, J.3    Ferguson-Smith, M.A.4
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    • Chromosomal evolution of the Chinese muntjac (Muntiacus reevesi)
    • of special interest. See annotation [22].
    • Yang F, O'Brien PCM, Wienberg J, Ferguson-Smith MA. Chromosomal evolution of the Chinese muntjac (Muntiacus reevesi). of special interest Chromosoma. 106:1997;37-44 See annotation [22].
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    • Yang, F.1    O'Brien, P.C.M.2    Wienberg, J.3    Ferguson-Smith, M.A.4
  • 27
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    • Shared DNA sequences between X and Y chromosomes in the tammar wallaby - evidence for independent additions to eutherian and marsupial chromosomes
    • of special interest. This is the first paper describing chromosome painting in non-placental mammals. Painting probes were established by flow-sorting and microdissection of chromosomes. (See also annotation [22].)
    • Toder R, Wienberg J, Voullaire L, O'Brien PCM, Maccarone P, Marshall Graves JA. Shared DNA sequences between X and Y chromosomes in the tammar wallaby - evidence for independent additions to eutherian and marsupial chromosomes. of special interest Chromosoma. 106:1997;94-98 This is the first paper describing chromosome painting in non-placental mammals. Painting probes were established by flow-sorting and microdissection of chromosomes. (See also annotation [22].).
    • (1997) Chromosoma , vol.106 , pp. 94-98
    • Toder, R.1    Wienberg, J.2    Voullaire, L.3    O'Brien, P.C.M.4    Maccarone, P.5    Marshall Graves, J.A.6
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    • Comparative chromosome painting between two marsupials: Origins of an of an XX/XY1Y2 sex chromosome system
    • of special interest. See annotations [22, 27].
    • Toder R, O'Neill RW, Wienberg J, Voillaire L, Graves JAM. Comparative chromosome painting between two marsupials: origins of an of an XX/XY1Y2 sex chromosome system. of special interest Mamm Genome. 8:1997;418-422 See annotations [22, 27].
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    • Toder, R.1    O'Neill, R.W.2    Wienberg, J.3    Voillaire, L.4    Graves, J.A.M.5
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    • Development of a chicken Z-chromosome specific DNA library
    • of special interest. The chicken Z-chromosome DNA library was used here for cross-species chromosome painting to turkey metaphase chromosomes and delineated the homologous sex chromosome. The hybridisation pattern suggests that, for this chromosome, synteny is conserved in both species.
    • Ambady S, Ciufo S, Robl JM, Smyth JR, Ponce de Len FA. Development of a chicken Z-chromosome specific DNA library. of special interest J Hered. 88:1997;247-249 The chicken Z-chromosome DNA library was used here for cross-species chromosome painting to turkey metaphase chromosomes and delineated the homologous sex chromosome. The hybridisation pattern suggests that, for this chromosome, synteny is conserved in both species.
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    • Ambady, S.1    Ciufo, S.2    Robl, J.M.3    Smyth, J.R.4    Ponce De Len, F.A.5
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    • Multicolor spectral karyotyping of human chromosomes
    • of special interest. of outstanding interest. Studies of gibbon chromosomes not only confirmed the suggestions of previous experiments (see annotation [6]) but spectral karyotyping also identified some small rearrangements and corrected the order of hybridisation signals on few individual chromosomes that were not well defined in the previous single chromosome painting experiments.
    • of special interest Schröck E, duManoir S, Veldman T, Schoell B, Wienberg J, Ferguson-Smith MA, Ledbetter D, Bar-Am I, Soenksen D, Garini Y, Ried T. Multicolor spectral karyotyping of human chromosomes. of outstanding interest Science. 273:1996;494-497 Studies of gibbon chromosomes not only confirmed the suggestions of previous experiments (see annotation [6]) but spectral karyotyping also identified some small rearrangements and corrected the order of hybridisation signals on few individual chromosomes that were not well defined in the previous single chromosome painting experiments.
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    • Schröck, E.1    Dumanoir, S.2    Veldman, T.3    Schoell, B.4    Wienberg, J.5    Ferguson-Smith, M.A.6    Ledbetter, D.7    Bar-Am, I.8    Soenksen, D.9    Garini, Y.10    Ried, T.11
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    • Multicolor spectral karyotyping of mouse chromosomes
    • of special interest. As for human painting probes, spectral karyotyping has also been used to differentiate all mouse chromosomes in a single hybridisation experiment and this probe set is ready for use in comparative studies of rodent karyotype evolution.
    • Liyanage M, Coleman A, duManoir S, Veldman T, McCormack S, Dickson RD, Barlow C, Wynshaw-Boris A, Janz S, Wienberg J, et al. Multicolor spectral karyotyping of mouse chromosomes. of special interest Nat Genet. 14:1996;312-315 As for human painting probes, spectral karyotyping has also been used to differentiate all mouse chromosomes in a single hybridisation experiment and this probe set is ready for use in comparative studies of rodent karyotype evolution.
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    • Karyotyping human chromosomes by combinatorial multi-fluor FISH
    • of outstanding interest. The authors present a filter-based approach to differentiate all 24 human chromosomes in one hybridisation experiment. They use multiple exposures through single band-pass filter sets for image acquisition for each fluorochrome followed by software-based image registration and data analysis. A classification algorithm was applied which allowed them to recognise each chromosome on the basis of the combination of fluorochrome labels and to identify chromosome rearrangements.
    • Speicher MR, Ballard GS, Ward DC. Karyotyping human chromosomes by combinatorial multi-fluor FISH. of outstanding interest Nat Genet. 12:1996;368-375 The authors present a filter-based approach to differentiate all 24 human chromosomes in one hybridisation experiment. They use multiple exposures through single band-pass filter sets for image acquisition for each fluorochrome followed by software-based image registration and data analysis. A classification algorithm was applied which allowed them to recognise each chromosome on the basis of the combination of fluorochrome labels and to identify chromosome rearrangements.
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    • Generation of a multi colour bar code by molecular cytogenetics
    • of outstanding interest. Although not as highly resolved as classical banding patterns, these experiments already demonstrate various applications where the present multicolour 'bar code' can add significantly to the understanding of changes in chromosome morphology. The human bar code probe readily allowed all gorilla homologous chromosomes (Figure 4b) and those from various other primate species to be identified. The two chromosomes homologous to human chromosome 2p and 2q and the reciprocal translocation between chromosomes homologous to human chromosome 5 and 17 in the gorilla could also be verified by the bar code probe, as well as the size difference of the chromosome Iq12 heterochromatic block.
    • Müller S, Rocchi M, Ferguson-Smith MA, Wienberg J. Generation of a multi colour bar code by molecular cytogenetics. of outstanding interest Hum Genet. 100:1997;271-278 Although not as highly resolved as classical banding patterns, these experiments already demonstrate various applications where the present multicolour 'bar code' can add significantly to the understanding of changes in chromosome morphology. The human bar code probe readily allowed all gorilla homologous chromosomes (Figure 4b) and those from various other primate species to be identified. The two chromosomes homologous to human chromosome 2p and 2q and the reciprocal translocation between chromosomes homologous to human chromosome 5 and 17 in the gorilla could also be verified by the bar code probe, as well as the size difference of the chromosome Iq12 heterochromatic block.
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    • Müller, S.1    Rocchi, M.2    Ferguson-Smith, M.A.3    Wienberg, J.4
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    • Region-specific YAC banding and painting probes for comparative genome mapping: Implications for the evolution of human chromosome 2
    • Haaf T, Bray-Ward P. Region-specific YAC banding and painting probes for comparative genome mapping: implications for the evolution of human chromosome 2. Chromosoma. 104:1997;537-544.
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    • Integration of the cytogenetic, genetic, and physical maps of the human genome by FISH mapping of CEPH YAC clones
    • of special interest. This paper provides a landmark set of YACs for the entire human karyotype including ~800 probes. The authors make use of CEPH Mega-YAC library clones that contain short tandem repeat polymorphisms (STRPs) placed 15 cM apart along the human genetic map. This probe set will allow a comparison of the human genetic and cytogenetic map with the cytogenetic map of any higher primate based on FISH with these probes (see [23, 35]).
    • Bray-Ward P, Menninger J, Lieman J, Desai T, Mokady N, Banks A, Ward DC. Integration of the cytogenetic, genetic, and physical maps of the human genome by FISH mapping of CEPH YAC clones. of special interest Genomics. 32:1996;1-14 This paper provides a landmark set of YACs for the entire human karyotype including ~800 probes. The authors make use of CEPH Mega-YAC library clones that contain short tandem repeat polymorphisms (STRPs) placed 15 cM apart along the human genetic map. This probe set will allow a comparison of the human genetic and cytogenetic map with the cytogenetic map of any higher primate based on FISH with these probes (see [23, 35]).
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    • Bray-Ward, P.1    Menninger, J.2    Lieman, J.3    Desai, T.4    Mokady, N.5    Banks, A.6    Ward, D.C.7
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    • Application of three different methods to analyze fibre-FISH results obtained using four lambda clones from the porcine MHC III region
    • Sösberg A, Peelman LJ, Chowdhary BP. Application of three different methods to analyze fibre-FISH results obtained using four lambda clones from the porcine MHC III region. Chromosome Res. 5:1997;247-253.
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    • Mann, S.M.1    Burkin, D.J.2    Griffin, D.K.3    Ferguson-Smith, M.A.4


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