Interaction of a bzip oligopeptide model with oligodeoxyribonucleotides modelling dna binding sites. the effect of flanking sequences

Journal of Biomolecular Structure and Dynamics

Volumn 15, Issue 3, 1997, Pages 587-596

  Votavova H ^a   Hodanova K ^a   Arnold, L ^a   Sponar J ^a  

^a INSTITUTE OF ORGANIC CHEMISTRY AND BIOCHEMISTRY   (Czech Republic)

Author keywords

[No Author keywords available]

Indexed keywords

DOUBLE STRANDED DNA; LEUCINE ZIPPER PROTEIN; OLIGODEOXYRIBONUCLEOTIDE; OLIGOPEPTIDE;

ALPHA HELIX; ARTICLE; BINDING SITE; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; DNA BINDING; DNA CONFORMATION; DNA FLANKING REGION; DNA PROTEIN COMPLEX; DNA SEQUENCE; MOLECULAR MODEL; PRIORITY JOURNAL; PROTEIN CONFORMATION;

EID: 0031469737     PISSN: 07391102     EISSN: 15380254     Source Type: Journal    
DOI: 10.1080/07391102.1997.10508968     Document Type: Article

References (29)

1. Hurst, H. C., 1994. Protein Profile, 1:123–168.
2. O'Neil, K. T., Hoess, R. H., and DeGrado, W. F., 1990. Science, 249:774–778.
3. O'Neil, K. T., Hoess, R. H., and DeGrado, W. F., 1991. Biochemistry, 30:9030–9034.
4. Saudek, V., Pasley, H. S., Gilson, T., Gausepohl, H., Frank, R., and Pastore, A., 1991. Biochemistry, 30:1310–1317.
5. Talanian, R. V., McKnight, S. L., and Kim, P. S., 1990. Science, 249:769–771.
6. Weiss, M. A., Ellenberger, T., Wobbe, C. R., Lee, J. P., Harrison, S. C., and Struhl, K., 1990. Nature, 347:575–578.
7. Talanian, R. V., McKnight, C. J., Rutkowki, R., and Kim, P. S., 1992. Biochemistry, 31:6871–6875.
8. König, P., and Richmond, T. J., 1993. J. Mol. Biol., 233:139–154.
9. Keller, W., König, P., and Richmond, T. J., 1995. J. Mol. Biol., 254:657–667.
10. John, M., Leppik, R., Busch, S. J., Granger-Schnarr, M., and Schnarr, M., 1996. Nucl. Acids Res., 24:4487–4494.
11. Tocík, Z., Arnold, L., and Smrt, J., 1987. Nucl. Acids Res. Symp. Series, 18:193–196.
12. Chervenka, C. H., 1970. Anal. Biochem., 34:24–26.
13. Woody, R. W., 1985. The Peptides Edited by:Udenfriend, S., Meierhofer, J., and Hruby, J. R., 15–114. New York:Academic Press. 7
14. Suckow, M., Lopata, M., Seydel, A., Kisters-Woike, B., von Wilcken-Bergmann, B., and Müller Hill, B., 1996. EMBO J., 15:598–606.
15. Koldin, B., Suckow, M., Seydel, A., von Wilcken-Bergmann, B., and Müller-Hill, B., 1995. Nucl. Acids Res., 23:4162–4169.
16. Kim, J., and Struhl, K., 1995. Nucl. Acids Res., 23:2531–2537.
17. Rifkind, J. M., 1969. Biopolymers, 8:685–688.
18. Johnson, N. P., Lindstrom, J., Baase, W. A., and von Hippel, P. H., 1994. Proc. Natl. Acad. Sci. USA, 91:4840–4844.
19. Ryseck, R.-P., and Bravo, R., 1991. Oncogene, 6:533–542.
20. Berger, C., Jelesarov, I., and Bosshard, H. R., 1996. Biochemistry, 35:14984–14991.
21. Oliphant, A. R., Brandl, C. J., and Struhl, K., 1989. Mol. Cell. Biol., 9:2944–2949.
22. Lipanov, A. A., Kopka, M. L., Kaczor-Grzeskowiak, M., Quintana, J., and Dickerson, R. E., 1993. Biochemistry, 32:1373–1389.
23. Suzuki, M., Yagi, N., and Finch, J. T., 1996. FEBS Lett., 379:148–152.
24. Timsit, Y., Vilbois, E., and nad Moras, D., 1991. Nature, 354:167–170.
25. Chuprina, V. P., Lipanov, A. A., Fedoroff, O. Yu., Kim, S. G., Kintanar, A., and Reid, B. R., 1991. Proc. Natl. Acad Sci. USA, 88:9087–9091.
26. Harrington, R. E., and Winicov, I., 1994. Progr. Nucl. Acids Res. Mol. Biol., 47:195–270.
27. Churchill, D. M.A., Jones, D. M.N., Glaser, T., Hefner, H., Searles, M. A., and Travers, A. A., 1995. EMBO J., 14:1264–1275.
28. Klug, A., Jack, A., Viswamitra, M. A., Kennard, O., Shakked, Z., and Steitz, T. A., 1979. J. Mol. Biol., 131:669–680.
29. Peticolas, W. L., Wang, Y., and Thomas, G. A., 1988. Proc. Natl. Acad Sci. USA, 85:2579–2583.