Inter- and intraspecific genetic variation in Caulerpa (Chlorophyta) based on nuclear rDNA ITS sequences

European Journal of Phycology

Volumn 32, Issue 4, 1997, Pages 379-386

  Pillmann, A ^a   Woolcott, G W ^b   Olsen, J L ^c   Stam, W T ^c   King, R J ^b  

^a UNIVERSITY OF BONN   (Germany)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

^c UNIVERSITY OF GRONINGEN   (Netherlands)

Author keywords

Biogeography; Caulerpa; Internal transcribed spacer; ITS; Phylogeny; rDNA

Indexed keywords

CAULERPA;

EID: 0031459515     PISSN: 09670262     EISSN: None     Source Type: Journal    
DOI: 10.1017/S0967026297001352     Document Type: Review

References (34)

1. ADACHI, M., SAKO, Y. & ISHICA, Y. (1994). Restriction fragment length polymorphism of ribosomal DNA internal transcribed spacer and 5·8S regions in Japanese Alexandrium species (Dinophyceae). J. Phycol., 30: 857-863.
2. BARKER, F.T., OLSEN, J.L., STAM, W.T. & VAN DEN HOEK, C. (1992). Nuclear ribosomal DNA internal transcribed spacer regions (ITS1 and ITS2) define discrete biogeographic groups in Cladophora albida (Chlorophyta). J. Phycol., 28: 839-845.
3. BAKKER, F.T., OLSEN, J.L. & STAM, W.T. (1995 a). Evolution of nuclear rDNA ITS sequences in the Cladophora albida/sericea clade (Chlorophyta). J. Mol. Evol., 40: 640-651.
4. BAKKER, F.T., OLSEN, J.L. & STAM, W.T. (1995 b). Global phylogeography in the cosmopolitan species Cladophora vagabunda (Chlorophyta) based on nuclear rDNA internal transcribed spacer sequences. Eur. J. Phycol., 30: 197-208.
5. BENZIE, J.A.H., PRICE, I.R. & BALLMENT, E. (1997). Protein electrophoresis distinguishes species boundaries in Caulerpa (Chlorophyta) from the Great Barrier Reef, Australia. J. Phycol., 32: 491-504.
6. CALVERT, H.E., DAWES, C.J. & BOROWITZKA, M.A. (1976). Phylogenetic relationships of Caulerpa (Chlorophyta) based on comparative chloroplast ultrastructure. J. Phycol., 12: 149-162.
7. CHOPIN, T., BIRD, C.J., MURPHY, C.A., OSBORNE, J.A., PATWARY, M.U. & FLOĆH, J.-Y. (1996). A molecular investigation of polymorphism in the North Atlantic red alga Chondrus crispus (Gigartinales). Phycol. Res., 44: 69-80.
8. COLEMAN, A.W., SUAREZ, A. & GOFF, L.J. (1994). Molecular delineation of species and syngens in Volvocacean green algae (Chlorophyta). J. Phycol., 30: 80-90.
9. DOYLE, J.J. & DOYLE, J.L. (1990). Isolation of plant DNA from fresh tissue. Focus, 2: 13-15.
10. FELSENSTEIN, J. (1989). PHYLIP: phylogeny inference package, version 3.572. University of Washington, Seattle.
11. GARDES, M., WHITE, T.J., FORTIN, J.A., BRUNS, T.D. & TAYLOR, J.W. (1991). Identification of indigenous and introduced symbiotic fungi in ectomycorrhizae by amplification of nuclear and mitochondrial ribosomal DNA. Can. J. Bot., 69: 180-190.
12. KOOISTRA, W.H.C.F., STAM, W.T., OLSEN, J.L. & VAN DEN HOEK, C. (1992). Biogeography of Cladophoropsis membranacea (Chlorophyta) based on comparisons of nuclear rDNA ITS sequences. J. Phycol., 28: 660-668.
13. KOOISTRA, W.H.C.F., OLSEN, J.L., STAM, W.T. & VAN DEN HOEK, C. (1993). Problems relating to species sampling in phylogenetic studies: an example of non-monophyly in Cladophoropsis and Struvea (Siphonocladales, Chlorophyta). Phycologia, 32: 419-428.
14. KUMAR, S., TAMURA, K. & NEI, M. (1993). MEGA: molecular evolutionary genetic analysis, version 1.0. The Pennsylvania State University, University Park, PA, USA.
15. LAMOUROUX, J.V.F. (1809). Mémoires sur les Caulerpa, nouveau genre de la famille des algues marines. J. Bot. (Paris), 2: 136-142.
16. LEE, S.B. & TAYLOR, J.W. (1992). Phylogeny of five fungus-like Protoctistan Phytophthora species, inferred from the internal transcribed spacers of ribosomal DNA. Mol. Biol. Evol., 9: 636-653.
17. LUCAS, A.H.S. (1927). Notes on Australian marine algae. V. Proc. Linn. Soc. N.S.W., 52: 555-562.
18. MAI, J.C. & COLEMAN, A.W. (1997). The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. J. Mol. Evol., 44: 258-271.
19. MAY, V. (1976). Changing dominance of an algal species (Caulerpa filiformis (Suhr) Hering). Telopea, 1: 136-138.
20. MILLAR, A.J.K. & KRAFT, G.T. (1994). Catalogue of marine benthic green algae (Chlorophyta) of New South Wales, including Lord Howe Island, South-western Pacific. Aust. Syst. Bot., 7: 419-453.
21. OLSEN, J.L. & STAM, W.T. (1997). Molecular markers in phylogeography and identification of marine algae with specific recommendations for research opportunities at the species and population level in Caulerpa. C. R. Acad. Sci., Paris: accepted.
22. PETERS, A.F., OPPEN, M.J.H. VAN, WIENCKE, C., STAM, W.T. & OLSEN, J.L. (1997). Phylogeny and historical ecology of the Desmarestiaceae (Phaeophyta) support a southern hemisphere origin. J. Phycol., 33: 294-309.
23. RITLAND, C. & STRAUS, N.A. (1993). High evolutionary divergence of the 5·8S ribosomal DNA in Mimulus glaucescens (Scrophulariaceae). Plant Mol. Biol., 22: 691-696.
24. SILVA, P.C., BASSON, P.W. & MOE, R.L. (1996). Catalogue of the benthic marine algae of the Indian Ocean. Univ. Calif. Publ. Bot., 79: 1-1259. [http://www.ucjeps.herb.berkeley.edu/rlmoe/tioc/abstrat.out.html]
25. SUHR, J.N. (1834). Übersicht der Algen, welche von Hrn. Ecklon and der Südafrikanischen Küste gefunden worden sind. Flora, 17(2): 721-743.
26. SWOFFORD, D.L. (1993). PAUP: Phylogenetic analysis using parsimony, version 3.1.1. Laboratory of Molecular Systematics. SI, Washington, DC.
27. TAKAIWA, F., ONO, K., IIDA, Y. & SUGIURA, M. (1985 a). The complete nucleotide sequence of a rice 26S ribosomal RNA gene. Gene, 37: 255-289.
28. TAKAIWA, F., ONO, K. & SUIGIURA, M. (1985 b). Nucleotide sequence of the 17S-25S spacer region from rice rDNA. Plant Mol. Biol., 4: 355-364.
29. VAN OPPEN, M.J.H. (1995 a). Phylogenetic relationships among some Ulotrichalean (Ulvophyceae, Chlorophyta) algae, as inferred from rDNA ITS and partial 18S sequences. In Tracking trails by cracking codes. Molecular biogeography and the evolution of benthic cold-water seaweeds. PhD thesis, Rijkuniversiteit Groningen, The Netherlands.
30. VAN OPPEN, M.J.H., DRAISMA, S.G.A., OLSEN, J.L. & STAM, W. T. (1995 b). Multiple trans-Arctic passages in the red alga Phycodrys rubens: evidence from nuclear rDNA ITS sequences. Mar. Biol., 123: 179-188.
31. VAN OPPEN, M.J.H., KLERK, H., OLSEN, J.L. & STAM, W.T. (1996). Hidden diversity in marine algae: some examples of genetic variation below the species level. J. Mar. Biol. Assoc. U.K., 76: 239-242.
32. WHITE, T.J., BRUNS, T., LEE, S. & TAYLOR, J. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: Guide to Methods and Applications (Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J., Editors) 315-322. Academic Press, San Diego.
33. WOMERSLEY, H.B.S. (1984). The marine benthic flora of southern Australia. Part I. Government Printer, South Australia.
34. ZECHMAN, F.W., ZIMMER, E.A. & THERIOT, B.C. (1994). Use of ribosomal internal transcribed spacers for phylogenetic studies in diatoms. J. Phycol., 30: 507-512.