Theoretical studies on the redox-Bohr effect in cytochrome c3 from Desulfovibrio vulgaris Hildenborough

Journal of Biological Inorganic Chemistry

Volumn 2, Issue 6, 1997, Pages 714-727

  Soares, Cláudio M ^a   Martel, Paulo J ^a   Carrondo, Maria A ^a  

^a INSTITUTO DE TECNOLOGIA QUÍMICA E BIOLÓGICA   (Portugal)

Author keywords

Cytochrome c3; Electron proton transfer coupling; Electrostatic calculations; pK(a) calculations; Redox Bohr effect

Indexed keywords

BACTERIAL ENZYME; CYTOCHROME C3; HEME; HISTIDINE; LYSINE; PROPIONIC ACID;

ARTICLE; CONFORMATIONAL TRANSITION; CONTROLLED STUDY; DESULFOVIBRIO VULGARIS; NONHUMAN; OXIDATION REDUCTION POTENTIAL; PH; PKA; PRIORITY JOURNAL; PROTON TRANSPORT;

EID: 0031458937     PISSN: 09498257     EISSN: None     Source Type: Journal    
DOI: 10.1007/s007750050188     Document Type: Article

References (62)

1. Santos H, Moura JJG, Moura I, LeGall J, Xavier AV (1984) Eur J Biochem 141:283-296
2. Coletta M, Catarino T, LeGall J, Xavier AV (1991) Eur J Biochem 202:1101-1106
3. Salgueiro CA, Turner DL, Santos H, LeGall J, Xavier AV (1992) FEBS Lett 314:155-158
4. Turner DL, Salgueiro CA, Catarino T, LeGall J, Xavier AV (1994) BBA 1187:232-235
5. Papa S, Guerrieri F, Izzo G (1979) FEBS Lett 105:213-216
6. Xavier AV (1985) In: Xavier AV (ed) Frontiers in bioinorganic chemistry. VCH, Weinheim, Germany
7. Kraulis PJ (1991) J Appl Cryst 24:946-950
8. Louro RO, Catarino T, Salgueiro CA, LeGall J, Xavier AV (1996) JBIC 1:34-38
9. Badziong W, Thauer RK, Zeikus JG (1978) Arch Microbiol 116:41-49
10. Badziong W, Thauer RK (1978) Arch Microbiol 117:209-214
11. Moore GR, Pettigrew GH, Rogers NK (1986) Proc Natl Acad Sci USA 83:4998-4999
12. Gunner MR, Honig B (1991) Proc Natl Acad Sci USA 88:9151-9155
13. Jensen GM, Warshel A, S6 nn PJ (1994) Biochemistry 33:10911-10924
14. Lo TP, Komar-Panicucci S, Sherman F, McLendon G, Brayer GD (1995) Biochemistry 34:5259-5268
15. Gane PJ, Freedman RB, Warwicker J (1995) J Mol Biol 249:376-387
16. Churg AK, Warshel A (1986) Biochemistry 25:1675-1681
17. Warshel A, Papazyan A, Muegge I (1997) J Biol Inorg Chem 2:143-152
18. Pettigrew GW, Meyer TE, Bartsch RG, Kamen MD (1975) BBA 430:197-208
19. Pettigrew GW, Bartsch RG, Meyer TE, Kamen MD (1978) BBA 503:509-523
20. Moore GR, Pettigrew GW, Pitt RC, Williams RJP (1980) BBA 590:261-271
21. Barakat R, Strekas TC (1982) BBA 679:393-399
22. Leitch FA, Moore GR, Pettigrew GW (1984) Biochemistry 23:1831-1838
23. Moore GR, Harris DE, Leitch FA, Pettigrew GW (1984) BBA 764:331-342
24. Timkovich R, Cork MS (1984) Biochemistry 23:851-860
25. Tonge P, Moore GR, Wharton CW (1989) Biochem J 258:599-605
26. Park JS, Ohmura T, Kano K, Sagara T, Niki K, Kyoguku Y, Akutsu H (1996) BBA 1293:45-54
27. Warshel A (1981) Biochemistry 20:3167-3177
28. Warshel A, Russell ST (1984) Quart Rev Biophys 17:283-422
29. Russell ST, Warshel A (1985) J Mol Biol 185:389-404
30. Warshel A, Sussman F, King G (1986) Biochemistry 25:8368-3372
31. Bashford D, Karplus M (1990) Biochemistry 29:10219-10225
32. Lee FS, Chu ZT, Warshel A (1993) J Comp Chem 14:161-185
33. Yang A-S, Gunner MR, Sampogna R, Sharp K, Honig B (1993) Proteins 15:252-265
34. You TJ, Bashford D (1995) Biophys J 69:1721-1733
35. Beroza P, Fredkin DR, Okamura MY, Feher G (1991) Proc Natl Acad Sci USA 88:5804-5808
36. Matias PM, Frazão C, Morais J, Coll M, Carrondo MA (1993) J Mol Biol 234:680-699
37. van Gunsteren WF, Berendsen HJC (1987) Groningen molecular simulation (GROMOS) library manual, Biomos B.V., Nijenborgh 16, 9747. AG Groningen, The Netherlands
38. Smith LJ, Mark AE, Dobson CM, van Gunsteren WF (1995) Biochemistry 34:10918-10931
39. Bashford D, Case DA, Dalvit C, Tennant L, Wright P (1993) Biochemistry 32:8045-8056
40. Gilson MK, Honig BH (1988) Proteins 3:32-52
41. Antosiewicz J, MacCammon JA, Gilson MK (1994) J Mol Biol 238:415-436
42. Antosiewicz J (1995) Biophys J 69:1344-1354
43. Warshel A, Russell ST, Churg AK (1984) Proc Natl Acad Sci USA 81:4785-4789
44. Warshel A, Åqvist J (1991) Annu Rev Biophys Chem 20:267-298
45. Muegge I, Qi PX, Wand AJ, Chu ZT, Warshel A (1997) J Phys Chem 101:825-836
46. Sham YY, Chu ZT, Warshel A (1997) J Phys Chem. (in press)
47. Smith PE, Brunne RM, Mark AE, van Gunsteren WF (1993) J Am Chem Soc 97:2009-2014
48. King G, Lee FS, Warshel A (1991) J Chem Phys 95:4366-4377
49. Gilson MK, Sharp KA, Honig BH (1987) J Comp Chem 9:327-335
50. Nicholls A, Honig B (1991) J Comp Chem 12:435-445
51. Takano T, Dickerson RE (1981) J Mol Biol 153:79-94
52. Takano T, Dickerson RE (1981) J Mol Biol 153:95-115
53. Berghuis AM, Brayer GD (1992) J Mol Biol 223:959-976
54. Turner DL, Salgueiro CA, Catarino T, LeGall J, Xavier AV (1996) Eur J Biochem 241:723-731
55. Demchuk E, Wade RC (1996) J Phys Chem 100:17373-17387
56. Blackledge MJ, Guerlesquin F, Marion D (1996) Proteins 24:178-194
57. Bertrand P, Mbarki O, Asso M, Blanchard L, Guerlesquin F, Tegoni M (1995) Biochemistry 34:11071-11079
58. Bashford D, Karplus M, Canters GW (1988) J Mol Biol 203:507-510
59. Lancaster CRD, Michel H, Honig B, Gunner MR (1996) Biophys J 70:2469-2492
60. Matias PM, Morais J, Coelho R, Carrondo MA, Wilson K, Dauter Z, Sieker L (1996) Prot Sci 5:1342-1354
61. Rogers NK, Moore GR (1988) FEBS Lett 228:69-73
62. Pereira IC, Teixeira M, Xavier AV (1997) Structure and Bonding (in press)