Microisolation of the chicken Z chromosome and construction of microclone libraries

Genome

Volumn 40, Issue 6, 1997, Pages 865-872

  Zimmer, Régis ^a   Haberfeld, Alon ^a,b   Gibbins, Ann M Verrinder ^a  

^a UNIVERSITY OF GUELPH   (Canada)

^b Hazera Genetics Ltd   (Israel)

Author keywords

Chicken Z chromosome; Microcloning; Microdissection

Indexed keywords

EID: 0031431114     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-812     Document Type: Article

References (40)

1. Agarwal, S.K., Cogburn, L.A, and Burnside, J. 1994. Dysfunctional growth hormone receptor in a strain of sex-linked dwarf chicken: evidence for a mutation in the intracellular domain. J. Endocrinol. 142: 427-434.
2. Brockdorff, N., Fisher, E.M.C., Cavanna, J.S., Lyon, M.F., and Brown, S.D. 1987. Construction of a detailed molecular map of the mouse X chromosome by microcloning and interspecific crosses. EMBO J. 6: 3291.
3. Bujo, H., Hermann, M., Kaderli, M.O., Jacobsen, L., Sugawara, S., Nimpf, J., Yamamoto, T., and Schneider, W.J. 1994. Chicken oocyte growth is mediated by an eight ligand binding repeat member of the LDL receptor family. EMBO J. 13: 5165-5175.
4. Burt, D.W., Bumstead, N., Bitgood, J.J., Ponce de León, F.A., and Crittenden, L.B. 1995. Chicken genome mapping: a new era in avian genetics. Trends Genet. 11: 190-194.
5. Carsience, R.S., Clark, M.E., Gibbins, A.M.V., and Etches, R.J. 1993. Germline chimeric chickens from dispersed donor blastodermal cells and compromised recipient embryos. Development, 117: 669-675.
6. Chen, Q., and Armstrong, K. 1995. Characterization of a library from a single microdissected oat (Avena sativa L.) chromosome. Genome, 38: 706-714.
7. Djabali, M., Nguyen, C., Biunno, I., Oostra, B.A., Mattei, M.-G., Ikeda, J.-E., and Jordan, B.R. 1991. Laser microdissection of the Fragile X region: identification of cosmid clones and of conserved sequences in this region. Genomics. 10: 1053-1060.
8. Donlon, T.A., Lalande, M., Wyman, A., Bruns, G., and Latt, S.A. 1986. Isolation of molecular probes associated with the chromosome 15 instability in the Prader-Willi syndrome. Proc. Natl. Acad. Sci. U.S.A. 83: 4408-4412.
9. Etches, R.J., and Gibbins, A.M.V. 1997. Strategies for the production of transgenic chickens. In Methods in molecular biology. Vol. 62. Recombinant gene expression protocols. Edited by R.S. Tuan. Humana Press, Totawa, N.J. pp. 433-450.
10. Eyal-Giladi, H., and Kochav, S. 1976. From cleavage to primitive streak formation: a complementary normal table and a new look at the first stages of the development of the chick. I. General morphology. Dev. Biol. 49: 321-323.
11. Fiedler, W., Claussen, U., Ludecke, H.-J., Senger G., Horsthemke, B., Van Kessel, A.G., Goertzen, W., and Fahsold, R. 1991. New markers for the Neurofibromatosis-2 region generated by microdissection of chromosome 22. Genomics, 10: 786-791.
12. Gibbins, A.M.V. 1993. Future interactions between molecular biologists and the poultry industry illustrated by a comparison of the genome mapping and gene targeting paradigms. In Manipulation of the avian genome. Edited by R.J. Etches and A.M. Verrinder Gibbins. CRC Press, Boca Raton, Fla. pp. 285-309.
13. Greenfield, A.J., and Brown, A.D.M. 1987. Microdissection and microcloning from the proximal region of mouse chromosome 7: isolation of clones genetically linked to the Pudgy locus. Genomics, 1: 153-158.
14. Guan, X. Y., Trent, J.M., and Meltzer, P.S. 1993. Generation of band-specific painting probes from a single microdissected chromosome. Hum. Mol. Genet. 2: 1117-1121.
15. Hadano, S., Watanabe, M., Yokoi, H., Kogi, M., Kondo, I., Tsuchiya, H., Kanazawa, I., Wakasa, K., and Ikeda, J.-E. 1991. Laser microdissection and single unique primer PCR allow generation of regional chromosome DNA clones from a single human chromosome. Genomics, 11: 364-373.
16. Hagag, N.G., and Viola, M.V. (Editors). 1993. Chromosome microdissection and cloning: a practical guide. Academic Press, San Diego, Calif.
17. Hampton, G., Leuteritz, G., Lüdecke, H.-J., Senger, G., Trautmann, U., Thomas, H., Solomon, E., Bodmer, W.F., Horsthemke, B., Claussen, U., and Ballhausen, W.G. 1991. Characterization and mapping of microdissected genomic clones from the Adenomatous Polyposis Coli (APC) region. Genomics, 11: 247-251.
18. Horwich, A.L., Fenton, W.A., Williams, K.R., Kalousek, F., Kraus, J.P., Doolitle, R.F., Konisberg, W., and Rosenberg, L.E. 1984. Structure and expression of a complementary DNA for the nuclear coded precursor of human mitochondrial ornithine transcarbamylase. Science (Washington, D.C.), 224: 1068-1074.
19. Jung, C., Claussen, U., Horsthemke, B., Fischer, F., and Herrmann, R.G. 1992. A DNA library from an individual Beta patellaris chromosome conferring nematode resistance obtained by microdissection of meiotic metaphase chromosomes. Plant. Mol. Biol. 20: 503-511.
20. Kobayashi, T., Kawaguchi, T., Kishino, T., Matsumoto, N., Niikawa, N., Mori, M., Levan, G., Klinga-Levan, K., and Hino, O. 1995. Isolation of microdissection clones from rat chromosome 10. Mamm. Genome, 6: 216-218.
21. th Poultry Science Association Annual Meeting, held at Edmonton, Alberta, Canada, 14-18 August. The Poultry Science Association, Champaign, Illinois, U.S.A. p. 11.
22. Lüdecke, H.-J., Senger, G., Claussen, U., and Horsthemke, B. 1989. Cloning defined regions of the human genome by microdissection of banded chromosomes and enzymatic amplification. Nature (London), 338: 348-350.
23. Lüdecke, H.-J., Senger, G., Claussen, U., and Horsthemke, B. 1992. Generation of region-specific probes by microdissection and universal enzymatic DNA amplification. In Techniques for analysis of complex genomes. Edited by R. Anand. Academic Press, San Diego, Calif, pp. 213-229.
24. Lunney, J.K., Grimm, D.R., Holley-Shanks, R., Goldman, T. Ponce de León, F.A., Ambady, S., Robl, J., Mediola, J., Buoen, L., and Louis, C. 1996. Chromosome specific libraries and their use in swine genome mapping. In Biotechnology's Role in the Genetic Improvement of Farm Animals: invited papers of The XX Beltsville Symposium in Agriculture Research, held 14-17 May 1995 in Beltsville, Md. Edited by R.H. Miller, V.G. Pursel, and D. Norman. American Society of Animal Science, Savoy, Ill. pp. 61-74.
25. Meltzer, P.S., Guan, X.Y., Burgess, A., and Trent, J.M. 1992. Rapid generation of region specific probes by chromosome microdissection and their application. Nature Genet. 1: 24-28.
26. Ponce de León, F.A., and Burt, D. 1993. Physical map of chicken: an update. In MAGAZINE (Manipulation of the avian genome). Edited by A.M.V. Gibbins and R.J. Etches. University of Guelph, Guelph, Canada, pp. 14-20.
27. Ponce de León, F.A., Ambady, S., Hawkings, G.A., Kappes, S.M., Bishop, M.D., Robl, J.M., and Beattie, C.W. 1996. Development of bovine X chromosome linkage group and painting probes to assess cattle, sheep, and goat X chromosome segment homologies. Proc. Natl. Acad. Sci. U.S.A. 93: 3450-3454.
28. Rohme, D., Fox, H., Herrmann, B., Frischauf, A.-M., Edström, J.-E., Mains, P., Silver, L.M., and Lehrach, H. 1984. Molecular clones of the mouse t complex derived from microdissected metaphase chromosomes. Cell, 36: 783-788.
29. Rothuizen J., and van Raak, M. 1994. Rapid PCR-based characterization of sequences flanking microsatellites in large-insert libraries. Nucleic Acids Res. 22: 5512-5513.
30. Rowe, P.S.N., Francis, F., and Goulding, J. 1994. Rapid isolation of DNA sequences flanking microsatellite repeats. Nucleic Acids Res. 22: 5135-5136.
31. Saitoh, Y., Ogawa, A., Hori, T., Kunita, R., and Mizuno, S. 1993. Identification and localization of two genes on the chicken Z chromosome: implication of evolutionary conservation of the Z chromosome among avian species. Chromosome Res. 1: 239-251.
32. Sambrook, J., Fritsch, E.F., and Maniatis. T. 1989. Molecular cloning: a laboratory manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
33. Sazanov, A.A., Alexeyevich, L.A., Sazanova, A.L., Duckelskaya, A.V., Nindenfur, A.V., and Smirnov, A.F. 1995. The assignment of several DNA-probes to chicken chromosomes by in situ hybridization. In Proceedings of the 9th North American Colloquium on Domestic Animals Cytogenetics and Gene Mapping. College Station, Tex. pp. 88-89.
34. Shaw, E.M., Otis, J.S., Lamont, S.J., Guise, K.S., and Shoffner, R.N. 1996. Gene mapping by chromosome microdissection and microisolation in the chicken. Poul. Sci. 75: 6-12.
35. Stevens, L. (Editor). 1996. Avian biochemistry and molecular biology. Cambridge University Press, Cambridge.
36. Telenius, H., Carter, N.P., Bebb, C.E., Nordenskjöld, M., Ponder, B.A.J., and Tunnacliffe, A. 1992. Degenerate oligonucleotide-primed PCR: general amplification of target DNA by a single degenerate primer. Genomics, 13: 718-725.
37. Weith, A., Winking, H., Brackmann, B., Boldyreff, B., and Traut, W. 1987. Microclones from mouse germ line HSR detect amplification and complex rearrangements of DNA sequences. EMBO J. 6: 1295-1300.
38. Wesley, C.S., Ben, M., Kreitman, M., Hagag, N., and Eanes, W.F. 1990. Cloning regions of the Drosophila genome by microdissection of polytene chromosome DNA and PCR with nonspecific primer. Nucleic Acids Res. 18: 599-603.
39. Zimmer, R., and Gibbins, A.M.V. 1997. Construction and characterization of a large-fragment chicken bacterial artificial chromosome library. Genomics, 42: 217-226.
40. Zimmer, R., King, W.A., and Gibbins, A.M.V. 1997. Generation of chicken Z-chromosome painting probes by microdissection for screening large-insert genomic libraries. Cytogenet. Cell Genet. In press.