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Volumn 8, Issue 3, 1997, Pages 176-185

RNA recognition by the MS2 phage coat protein

Author keywords

Bacteriophage MS2 RNA; RNA protein interaction; Translational repression

Indexed keywords

COAT PROTEIN; MUTANT PROTEIN;

EID: 0031427501     PISSN: 10445773     EISSN: None     Source Type: Journal    
DOI: 10.1006/smvy.1997.0120     Document Type: Article
Times cited : (54)

References (55)
  • 1
    • 0024261645 scopus 로고
    • Roles of operator and non-operator RNA sequences in bacteriophage R17 capsid assembly
    • Beckett D., Wu H., Uhlenbeck O. C. Roles of operator and non-operator RNA sequences in bacteriophage R17 capsid assembly. J. Mol. Biol. 204:1988;939-947.
    • (1988) J. Mol. Biol. , vol.204 , pp. 939-947
    • Beckett, D.1    Wu, H.2    Uhlenbeck, O.C.3
  • 2
    • 0027486046 scopus 로고
    • Encapsidation of heterologous RNAs by bacteriophage MS2 coat protein
    • Pickett G. G., Peabody P. S. Encapsidation of heterologous RNAs by bacteriophage MS2 coat protein. Nucleic Acids Res. 21:1993;4621-4626.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 4621-4626
    • Pickett, G.G.1    Peabody, P.S.2
  • 3
    • 0015408416 scopus 로고
    • Nucleotide sequence at the binding site for coat protein on RNA of bacteriophage R17
    • Bernardi A., Spahr P.-F. Nucleotide sequence at the binding site for coat protein on RNA of bacteriophage R17. Proc. Natl. Acad. Sci. USA. 69:1972;3033-3037.
    • (1972) Proc. Natl. Acad. Sci. USA , vol.69 , pp. 3033-3037
    • Bernardi, A.1    Spahr, P.-F.2
  • 4
    • 0027404265 scopus 로고
    • The RNA binding site of MS2 coat protein
    • Peabody D. S. The RNA binding site of MS2 coat protein. EMBO J. 12:1993;595-600.
    • (1993) EMBO J. , vol.12 , pp. 595-600
    • Peabody, D.S.1
  • 5
    • 0029899266 scopus 로고    scopus 로고
    • Complementation of RNA binding site mutations in MS2 coat protein heterodimers
    • Peabody D. S., Lim F. Complementation of RNA binding site mutations in MS2 coat protein heterodimers. Nucleic Acids Res. 24:1996;2352-2359.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 2352-2359
    • Peabody, D.S.1    Lim, F.2
  • 6
    • 0029923280 scopus 로고    scopus 로고
    • Improved method for selecting RNA-binding activities in vivo
    • Fouts D. E., Celander D. W. Improved method for selecting RNA-binding activities in vivo. Nucleic Acids Res. 24:1996;1582-1584.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 1582-1584
    • Fouts, D.E.1    Celander, D.W.2
  • 7
    • 0029731344 scopus 로고    scopus 로고
    • The RNA-binding site of bacteriophage Qβ coat protein
    • Lim F., Spignola M., Peabody D. S. The RNA-binding site of bacteriophage Qβ coat protein. J. Biol. Chem. 271:1996;31839-31845.
    • (1996) J. Biol. Chem. , vol.271 , pp. 31839-31845
    • Lim, F.1    Spignola, M.2    Peabody, D.S.3
  • 8
    • 0030801413 scopus 로고    scopus 로고
    • Direct genetic selection of two classes of R17/MS2 coat proteins with altered capsid assembly properties and expanded RNA-binding activities
    • Wang S., True H. L., Seitz E. M., Bennet K. A., Fouts D. E., Gardner J. F., Celander D. W. Direct genetic selection of two classes of R17/MS2 coat proteins with altered capsid assembly properties and expanded RNA-binding activities. Nucleic Acids Res. 25:1997;1649-1657.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 1649-1657
    • Wang, S.1    True, H.L.2    Seitz, E.M.3    Bennet, K.A.4    Fouts, D.E.5    Gardner, J.F.6    Celander, D.W.7
  • 10
    • 0027714770 scopus 로고
    • Using circular permutation analysis to redefine the R17 coat protein binding site
    • Gott J. M., Pan T., LeCuyer K. A., Uhlenbeck O. C. Using circular permutation analysis to redefine the R17 coat protein binding site. Biochemistry. 32:1993;13399-13404.
    • (1993) Biochemistry , vol.32 , pp. 13399-13404
    • Gott, J.M.1    Pan, T.2    LeCuyer, K.A.3    Uhlenbeck, O.C.4
  • 12
    • 0029143235 scopus 로고
    • Mutants of the bacteriophage MS2 coat protein which alter its cooperative binding to RNA
    • LeCuyer K. A., Behlen L. S., Uhlenbeck O. C. Mutants of the bacteriophage MS2 coat protein which alter its cooperative binding to RNA. Biochemistry. 34:1995;10600-10606.
    • (1995) Biochemistry , vol.34 , pp. 10600-10606
    • LeCuyer, K.A.1    Behlen, L.S.2    Uhlenbeck, O.C.3
  • 13
    • 0029086078 scopus 로고
    • The role of 2′-hydroxyl groups in an RNA-protein interaction
    • Baidya N., Uhlenbeck O. C. The role of 2′-hydroxyl groups in an RNA-protein interaction. Biochemistry. 34:1995;12363-12368.
    • (1995) Biochemistry , vol.34 , pp. 12363-12368
    • Baidya, N.1    Uhlenbeck, O.C.2
  • 15
    • 0030454007 scopus 로고    scopus 로고
    • Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex
    • LeCuyer K. A., Behlen L. S., Uhlenbeck O. C. Mutagenesis of a stacking contact in the MS2 coat protein-RNA complex. EMBO J. 15:1996;6847-6853.
    • (1996) EMBO J. , vol.15 , pp. 6847-6853
    • LeCuyer, K.A.1    Behlen, L.S.2    Uhlenbeck, O.C.3
  • 16
    • 0028292548 scopus 로고
    • Altering the RNA binding specificity of a translational repressor
    • Lim F., Spingola M., Peabody D. S. Altering the RNA binding specificity of a translational repressor. J. Biol. Chem. 269:1994;9006-9010.
    • (1994) J. Biol. Chem. , vol.269 , pp. 9006-9010
    • Lim, F.1    Spingola, M.2    Peabody, D.S.3
  • 17
    • 0028060580 scopus 로고
    • Mutations that increase the affinity of a translational repressor for RNA
    • Lim F., Peabody D. S. Mutations that increase the affinity of a translational repressor for RNA. Nucleic Acids Res. 22:1994;3748-3752.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 3748-3752
    • Lim, F.1    Peabody, D.S.2
  • 18
    • 9444264680 scopus 로고    scopus 로고
    • Preparation of oligonucleotides containing 4-thiouridine using Fpmp chemistry: Photo-crosslinking to RNA binding proteins using 350 nm irradiation
    • McGregor A., Vaman Rao M., Duckworth G., Stockley P. G., Connolly B. A. Preparation of oligonucleotides containing 4-thiouridine using Fpmp chemistry: Photo-crosslinking to RNA binding proteins using 350 nm irradiation. Nucleic Acids Res. 24:1996;3173-3180.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 3173-3180
    • McGregor, A.1    Vaman Rao, M.2    Duckworth, G.3    Stockley, P.G.4    Connolly, B.A.5
  • 19
    • 0025912789 scopus 로고
    • A specific, UV-induced RNA-protein crosslink using 5-bromouridine substituted RNA
    • Gott J. M., Willis M. C., Koch T. H., Uhlenbeck O. C. A specific, UV-induced RNA-protein crosslink using 5-bromouridine substituted RNA. Biochemistry. 30:1991;6290-6295.
    • (1991) Biochemistry , vol.30 , pp. 6290-6295
    • Gott, J.M.1    Willis, M.C.2    Koch, T.H.3    Uhlenbeck, O.C.4
  • 20
    • 0027717964 scopus 로고
    • Photocrosslinking of 5-iodouracil-substituted RNA and DNA to proteins
    • Willis M. C., Hicke B. J., Uhlenbeck O. C., Cech T. R., Koch T. H. Photocrosslinking of 5-iodouracil-substituted RNA and DNA to proteins. Science. 262:1993;1255-1257.
    • (1993) Science , vol.262 , pp. 1255-1257
    • Willis, M.C.1    Hicke, B.J.2    Uhlenbeck, O.C.3    Cech, T.R.4    Koch, T.H.5
  • 21
    • 0028606714 scopus 로고
    • An RNA-protein contact determined by 5-bromouridine substitution, photocrosslinking and sequencing
    • Willis M. C., LeCuyer K. A., Meisenheimer K. M., Uhlenbeck O. C., Koch T. H. An RNA-protein contact determined by 5-bromouridine substitution, photocrosslinking and sequencing. Nucleic Acids Res. 22:1994;4947-4952.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 4947-4952
    • Willis, M.C.1    LeCuyer, K.A.2    Meisenheimer, K.M.3    Uhlenbeck, O.C.4    Koch, T.H.5
  • 22
    • 0029912468 scopus 로고    scopus 로고
    • High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated protein
    • Meisenheimer K. M., Meisenheimer P. L., Willis M. C., Koch T. H. High yield photocrosslinking of a 5-iodocytidine (IC) substituted RNA to its associated protein. Nucleic Acids Res. 24:1996;981-982.
    • (1996) Nucleic Acids Res. , vol.24 , pp. 981-982
    • Meisenheimer, K.M.1    Meisenheimer, P.L.2    Willis, M.C.3    Koch, T.H.4
  • 23
    • 0026494918 scopus 로고
    • Bacteriophage and spliceosomal proteins function as position-dependentcis/trans
    • Stripecke R., Hentze M. W. Bacteriophage and spliceosomal proteins function as position-dependentcis/trans. Nucleic Acids Res. 20:1992;5555-5564.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 5555-5564
    • Stripecke, R.1    Hentze, M.W.2
  • 24
    • 0026558060 scopus 로고
    • Inhibition of human immunodeficiency virus type 1 Tat activation by coexpression of heterologous trans activators
    • Carroll R., Peterlin B. M., Derse D. Inhibition of human immunodeficiency virus type 1 Tat activation by coexpression of heterologous trans activators. J. Virol. 66:1992;2000-2007.
    • (1992) J. Virol. , vol.66 , pp. 2000-2007
    • Carroll, R.1    Peterlin, B.M.2    Derse, D.3
  • 25
    • 0028287307 scopus 로고
    • R17 coat protein binding site: A convenient reporter for in vitro transcription
    • Mathews S. A., Sriprakash K. S. R17 coat protein binding site: a convenient reporter for in vitro transcription. Nucleic Acids Res. 22:1994;534-535.
    • (1994) Nucleic Acids Res. , vol.22 , pp. 534-535
    • Mathews, S.A.1    Sriprakash, K.S.2
  • 26
    • 0025039584 scopus 로고
    • Trans-activation of HIV-1 Tat via a heterologous RNA binding protein
    • Selby M. J., Peterlin B. M. Trans-activation of HIV-1 Tat via a heterologous RNA binding protein. Cell. 62:1990;769-776.
    • (1990) Cell , vol.62 , pp. 769-776
    • Selby, M.J.1    Peterlin, B.M.2
  • 27
    • 0026447944 scopus 로고
    • Human immunodeficiency virus type 1 Rev activation can be achieved without Rev-responsive element RNA if Rev is directed to the target as a Rev/MS2 fusion protein which tethers the MS2 operator RNA
    • Venkatesan S., Gerstberger S. M., Park H., Holland S. M., Nam Y. Human immunodeficiency virus type 1 Rev activation can be achieved without Rev-responsive element RNA if Rev is directed to the target as a Rev/MS2 fusion protein which tethers the MS2 operator RNA. J. Virol. 66:1992;7469-7480.
    • (1992) J. Virol. , vol.66 , pp. 7469-7480
    • Venkatesan, S.1    Gerstberger, S.M.2    Park, H.3    Holland, S.M.4    Nam, Y.5
  • 30
    • 0027104297 scopus 로고
    • Selection of high affinity RNA ligands to the bacteriophage R17 coat protein
    • Schneider D., Tuerk C., Gold L. Selection of high affinity RNA ligands to the bacteriophage R17 coat protein. J. Mol. Biol. 288:1992;862-869.
    • (1992) J. Mol. Biol. , vol.288 , pp. 862-869
    • Schneider, D.1    Tuerk, C.2    Gold, L.3
  • 31
    • 0021113926 scopus 로고
    • Interaction of R17 coat protein with synthetic variants of its RNA binding site
    • Carey J. C., Lowary P. T., Uhlenbeck O. C. Interaction of R17 coat protein with synthetic variants of its RNA binding site. Biochemistry. 22:1983;4723-4730.
    • (1983) Biochemistry , vol.22 , pp. 4723-4730
    • Carey, J.C.1    Lowary, P.T.2    Uhlenbeck, O.C.3
  • 32
    • 0023657074 scopus 로고
    • Role of a bulged A residue in a specific RNA-protein interaction
    • Wu H.-N., Uhlenbeck O. C. Role of a bulged A residue in a specific RNA-protein interaction. Biochemistry. 26:1987;8221-8227.
    • (1987) Biochemistry , vol.26 , pp. 8221-8227
    • Wu, H.-N.1    Uhlenbeck, O.C.2
  • 33
    • 0025300971 scopus 로고
    • Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex
    • Talbot S. J., Goodman S., Bates S. R., Fishwick C. W., Stockley P. G. Use of synthetic oligoribonucleotides to probe RNA-protein interactions in the MS2 translational operator complex. Nucleic Acids Res. 18:1990;3521-3528.
    • (1990) Nucleic Acids Res. , vol.18 , pp. 3521-3528
    • Talbot, S.J.1    Goodman, S.2    Bates, S.R.3    Fishwick, C.W.4    Stockley, P.G.5
  • 34
    • 0027407913 scopus 로고
    • Multiple presentation of foreign peptides on the surface of an RNA-free spherical bacteriophage capsid
    • Mastico R. A., Talbot S. J., Stockley P. G. Multiple presentation of foreign peptides on the surface of an RNA-free spherical bacteriophage capsid. J. Gen. Virol. 74:1993;541-548.
    • (1993) J. Gen. Virol. , vol.74 , pp. 541-548
    • Mastico, R.A.1    Talbot, S.J.2    Stockley, P.G.3
  • 35
    • 0025233865 scopus 로고
    • Translational repression by bacteriophage MS2 coat protein expressed from a plasmid: A system for genetic analysis of a protein-RNA interaction
    • Peabody D. S. Translational repression by bacteriophage MS2 coat protein expressed from a plasmid: A system for genetic analysis of a protein-RNA interaction. J. Biol. Chem. 265:1990;5684-5689.
    • (1990) J. Biol. Chem. , vol.265 , pp. 5684-5689
    • Peabody, D.S.1
  • 36
    • 0027960331 scopus 로고
    • Crystal structure of an RNA bacteriophage coat protein-operator complex
    • Valegård K., Murray J. B., Stockley P. G., Stonehouse N. J., Liljas L. Crystal structure of an RNA bacteriophage coat protein-operator complex. Nature. 371:1994;623-626.
    • (1994) Nature , vol.371 , pp. 623-626
    • Valegård, K.1    Murray, J.B.2    Stockley, P.G.3    Stonehouse, N.J.4    Liljas, L.5
  • 37
    • 0031213649 scopus 로고    scopus 로고
    • The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions
    • Valegård K., Murray J. B., Stonehouse N. J., van den Worm S., Stockley P. G., Liljas L. The three-dimensional structures of two complexes between recombinant MS2 capsids and RNA operator fragments reveal sequence-specific protein-RNA interactions. J. Mol. Biol. 270:1997;727-728.
    • (1997) J. Mol. Biol. , vol.270 , pp. 727-728
    • Valegård, K.1    Murray, J.B.2    Stonehouse, N.J.3    Van Den Worm, S.4    Stockley, P.G.5    Liljas, L.6
  • 39
    • 0029094248 scopus 로고
    • Recruiting proteins to the RNA world
    • Mattaj I. W., Nagai K. Recruiting proteins to the RNA world. Nature Struct. Biol. 2:1995;518-522.
    • (1995) Nature Struct. Biol. , vol.2 , pp. 518-522
    • Mattaj, I.W.1    Nagai, K.2
  • 41
    • 0028916599 scopus 로고
    • A hot spot of binding energy in a hormone-receptor interface
    • Clackson T., Wells J. A. A hot spot of binding energy in a hormone-receptor interface. Science. 267:1995;383-386.
    • (1995) Science , vol.267 , pp. 383-386
    • Clackson, T.1    Wells, J.A.2
  • 42
    • 0026577063 scopus 로고
    • Control of translationalrepression by protein-protein interactions
    • Peabody D. S., Ely K. R. Control of translationalrepression by protein-protein interactions. Nucleic Acids Res. 20:1992;1649-1655.
    • (1992) Nucleic Acids Res. , vol.20 , pp. 1649-1655
    • Peabody, D.S.1    Ely, K.R.2
  • 43
    • 0030755831 scopus 로고    scopus 로고
    • MS2 coat protein mutants which bind Qβ RNA
    • Spingola M., Peabody D. S. MS2 coat protein mutants which bind Qβ RNA. Nucleic Acids Res. 25:1997;2808-2815.
    • (1997) Nucleic Acids Res. , vol.25 , pp. 2808-2815
    • Spingola, M.1    Peabody, D.S.2
  • 44
    • 0024264659 scopus 로고
    • Ribonucleoprotein complexes of R17 coat protein and a translational operator analog
    • Beckett D., Uhlenbeck O. C. Ribonucleoprotein complexes of R17 coat protein and a translational operator analog. J. Mol. Biol. 204:1988;927-938.
    • (1988) J. Mol. Biol. , vol.204 , pp. 927-938
    • Beckett, D.1    Uhlenbeck, O.C.2
  • 47
    • 0023597556 scopus 로고
    • An RNA mutation that increases the affinity of an RNA-protein interaction
    • Lowary P. T., Uhlenbeck O. C. An RNA mutation that increases the affinity of an RNA-protein interaction. Nucleic Acids Res. 15:1987;10483-10493.
    • (1987) Nucleic Acids Res. , vol.15 , pp. 10483-10493
    • Lowary, P.T.1    Uhlenbeck, O.C.2
  • 48
    • 0017571902 scopus 로고
    • Effect of transfer RNA synthetases on H-5 exchange of specific pyrimidines in transfer RNAs
    • Schoemaker H. J. P., Schimmel P. R. Effect of transfer RNA synthetases on H-5 exchange of specific pyrimidines in transfer RNAs. Biochemistry. 16:1977;5454-5464.
    • (1977) Biochemistry , vol.16 , pp. 5454-5464
    • Schoemaker, H.J.P.1    Schimmel, P.R.2
  • 49
    • 0019957913 scopus 로고
    • A covalent adduct between the uracil ring and the active site of an aminoacyl tRNA synthetase
    • Starzyk R. M., Koontz S. W., Schimmel P. A covalent adduct between the uracil ring and the active site of an aminoacyl tRNA synthetase. Nature. 298:1982;136-140.
    • (1982) Nature , vol.298 , pp. 136-140
    • Starzyk, R.M.1    Koontz, S.W.2    Schimmel, P.3
  • 50
    • 0024411382 scopus 로고
    • Translational repression by bacteriophage MS2 coat protein does not require cysteine residues
    • Peabody D. S. Translational repression by bacteriophage MS2 coat protein does not require cysteine residues. Nucleic Acids Res. 17:1989;6017-6027.
    • (1989) Nucleic Acids Res. , vol.17 , pp. 6017-6027
    • Peabody, D.S.1
  • 51
    • 0021111035 scopus 로고
    • Kinetic and thermodynamic characterization of the R17 coat protein-RNA interaction
    • Carey J. C., Uhlenbeck O. C. Kinetic and thermodynamic characterization of the R17 coat protein-RNA interaction. Biochemistry. 22:1983;2610-2615.
    • (1983) Biochemistry , vol.22 , pp. 2610-2615
    • Carey, J.C.1    Uhlenbeck, O.C.2
  • 52
    • 0024554271 scopus 로고
    • Determination of RNA-protein contacts using thiophosphate substitutions
    • Milligan J. F., Uhlenbeck O. C. Determination of RNA-protein contacts using thiophosphate substitutions. Biochemistry. 28:1989;2849-2855.
    • (1989) Biochemistry , vol.28 , pp. 2849-2855
    • Milligan, J.F.1    Uhlenbeck, O.C.2
  • 53
    • 0000913086 scopus 로고
    • A fast algorithm for rendering space-filling molecule pictures
    • Bacon D. J., Anderson W. F. A fast algorithm for rendering space-filling molecule pictures. J. Mol. Graph. 6:1988;219-220.
    • (1988) J. Mol. Graph. , vol.6 , pp. 219-220
    • Bacon, D.J.1    Anderson, W.F.2
  • 54
    • 0028057108 scopus 로고
    • Raster3D Version 2.0: A program for photorealistic molecular graphics
    • Merritt E. A., Murphy M. E. P. Raster3D Version 2.0: A program for photorealistic molecular graphics. Acta Crystallogr. D50:1994;869-873.
    • (1994) Acta Crystallogr. , vol.50 , pp. 869-873
    • Merritt, E.A.1    Murphy, M.E.P.2
  • 55
    • 0026244229 scopus 로고
    • Molscript: A program to produce both detailed and schematic plots of protein structures
    • Kraulis P. J. Molscript: A program to produce both detailed and schematic plots of protein structures. J. Appl. Crystallogr. 24:1991;946-950.
    • (1991) J. Appl. Crystallogr. , vol.24 , pp. 946-950
    • Kraulis, P.J.1


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