Simple sequence repeat DNA markers in alfalfa and perennial and annual Medicago species

Genome

Volumn 40, Issue 6, 1997, Pages 887-895

  Diwan, Noa ^a,b   Bhagwat, Arvind A ^a   Bauchan, Gary B ^a   Cregan, Perry B ^a  

^a AGRICULTURAL RESEARCH SERVICE   (United States)

^b WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

Alfalfa; Annual medics; Microsatellites; Simple sequence repeats; SSR markers

Indexed keywords

MEDICAGO;

EID: 0031422739     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/g97-115     Document Type: Article

References (42)

1. Akkaya, M.S., Bhagwat, A.A., and Cregan, P.B. 1992. Length polymorphism of simple sequence repeat DNA in soybean. Genetics, 132: 1131-1139.
2. Akkaya, M.S., Shoemaker, R.C., Specht, J.E., Bhagwat, A.A., and Cregan, P.B. 1995. Integration of simple sequence repeat (SSR) DNA markers into a soybean linkage map. Crop Sci. 35: 1439-1445.
3. Barnes, D.K., Bingham, E.T., Murphy, R.P., Hunt, O.J., Beard, D.F., Skrdla, W.H., and Teuber, L.R. 1977. Alfalfa germplasm in the United States: genetic vulnerability, use, improvement, and maintenance. Tech. Bull. U.S. Dep. Agric. No. 1571. U.S. Government Printing Office, Washington, D.C.
4. Barnes, D.K., Goplen, B.P., and Baylor, J.E. 1988. Highlights in the U.S.A. and Canada. In Alfalfa and alfalfa improvement. Edited by A.A. Hanson, D.K. Barnes, and R.R. Hill. Agronomy Monograph No. 29. American Society of Agronomy - Crop Science Society of America - Soil Science Society of America, Madison, Wis. pp. 1-24.
5. Bauchan, G.R., and Elgin, J.H., Jr. 1984. A new chromosome number for the genus Medicago. Crop Sci. 24: 193-195.
6. Bauchrowitz, M.A., Barker, D.G., Nadaud, I., Rouge, P., and Lescure, B. 1992. Lectin genes from the legume Medicago truncatula. Plant Mol. Biol. 19: 1011-1017.
7. Bell, C.J., and Ecker, J.R. 1994. Assignment of 30 microsatellite loci to the linkage map of Arabidopsis. Genomics, 19: 137-144.
8. Bingham, E.T., and McCoy, T.J. 1979. Cultivated alfalfa at the diploid level: origin, reproductive stability, and yield of seed and forage. Crop Sci. 19: 97-100.
9. Brummer, E.C., Kochert, G., and Bouton, J.H. 1991. RFLP variation in diploid and tetraploid alfalfa. Theor. Appl. Genet. 83: 89-96.
10. Brummer, E.C., Bouton, J.H., and Kochert, G. 1993. Development of an RFLP map in diploid alfalfa. Theor Appl. Genet. 86: 329-332.
11. Brummer, E.C., Bouton, J.H., and Kochert, G. 1995. Analysis of annual Medicago species using RAPD markers. Genome, 38: 362-367.
12. Brunel, D. 1994. A microsatellite marker in Helianthus annuus L. 1994. Plant Mol. Biol. 24: 397-400.
13. Crawford, E.J., Lake, A.W.H., and Boyce, K.G. 1989. Breeding annual Medicago species for semiarid conditions in southern Australia. Adv. Agron. 42: 399-437.
14. Cregan, P.B., Akkaya, M.S., Bhagwat, A.A., Lavi, U., and Jiang Rongwen, J. 1994a. Length polymorphisms of simple sequence repeat (SSR) DNA as molecular markers in plants. In Plant genome analysis. Edited by P.M. Gresshoff. CRC Press, Boca Raton, Fla. pp. 43-49.
15. Cregan, P.B., Bhagwat, A.A., Akkaya, M.S, and Jiang Rongwen. 1994b. Microsatellite fingerprinting and mapping of soybean. Methods. Mol. Cell. Biol. 5: 49-61.
16. Diwan, N., and Cregan, P.B. 1997. Automated sizing of fluorescent labeled simple sequence repeat (SSR) markers to assay genetic variation in soybean. Theor. Appl. Genet. In press.
17. Dunbier, M.W., and Bingham, E.T. 1974. Maximum heterozygosity in alfalfa: results using haploid-derived autotetraploids. Crop Sci. 15: 527-531.
18. Echt, C.S., Erdahl, L.A., and McCoy, T.J. 1992. Genetic segregation of random amplified polymorphic DNA in diploid cultivated alfalfa. Genome, 35: 84-87.
19. Echt, C.S., Kidwell, K.K., Knapp, S.J., Osborn, T.C., and McCoy, T.J. 1993. Linkage mapping in diploid alfalfa (Medicago sativa). Genome, 37: 61-71.
20. Elgin, J.H., and Ostazeski, S.A. 1984. Registration of eleven Race 1 and Race 2 anthracnose resistant alfalfa germplasm lines. Crop Sci. 24: 623-624.
21. Figdore, S.S., Kennard, W.C., Song, K.M., Slocum, M.K., and Osborn, T.C. 1988. Assessment of the degree of restriction fragment length polymorphism in Brassica. Theor. Appl. Genet. 75: 833-840.
22. Gunn, C.R., Skrdla, W.H., and Spencer, H.C. 1978. Classification of Medicago sativa L. using legume characters and flower colors. Tech. Bull. U.S. Dep. Agric. No. 1574. U.S. Government Printing Office, Washington, D.C.
23. Kidwell, K.K., Austin, D.F., and Osborn, T.C. 1994. RFLP evaluation of nine Medicago accessions representing the original germplasm sources of North American alfalfa cultivars. Crop Sci. 34: 230-236.
24. Kiss, G.B., Csanadi, G., Kalman, K., Kalo, P., and Okresz, L. 1993. Construction of a basic genetic map for alfalfa using RFLP, RAPD, isozyme and morphological markers. Mol. Gen. Genet. 238: 129-137.
25. Kresovich, S.K., Szewc-McFadden, A.K., and Bliek, S.M. 1995. Abundance and characterization of simple-sequence repeats (SSRs) isolated from a size-fractionated genomic library of Brassica napus L. (rapeseed). Theor. Appl. Genet. 91: 206-211.
26. Lagercrantz, U., Ellegren, H., and Andersson, L. 1993. The abundance of various polymorphic microsatellite motifs differs between plants and vertebrates. Nucleic Acids Res. 21: 1111-1115.
27. Lavi, U., Akkaya, M.S., Bhagwat, A.A., Lahav, E., and Cregan, P.B. 1995. Generation of simple sequence repeat DNA markers in avocado (Persea americana M.). Euphytica, 80: 171-177.
28. Lesins, K., and Lesins, I. 1979. Genus Medicago (Leguminosae). A taxogenetic study. Junk, The Hague, The Netherlands.
29. Litt, M., and Luty, J.A. 1989. A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene. Am. J. Hum. Genet. 44: 397-401.
30. Morgante, M., and Olivieri, A.M. 1993. PCR-amplified microsatellites as markers in plant genetics. Plant J. 3: 175-182.
31. Pramanik, S.K., and Bewley, J.D. 1993. A ubiquitin carrier protein cDNA from developing alfalfa embryos. Plant Physiol. 102: 1049-1050.
32. Quiros, C.F. 1983. Alfalfa, luzerne (Medicago sativa L.) In Isozymes in plant genetics and breeding, Part B. Edited by S.D. Tanksley, and T.J. Orton. Elsevier Scientific Publishing Co., Amsterdam. pp. 253-294.
33. Quiros, C.F., and Bauchan, G.R. 1988. The genus Medicago and the origin of Medicago sativa complex. In Alfalfa and alfalfa improvement. Edited by A.A. Hanson, D.K. Barnes, and R.R. Hill. Agronomy Monograph No. 29. American Society of Agronomy - Crop Science Society of America - Soil Science Society of America, Madison, Wis. pp. 93-124.
34. Rongwen, J., Akkaya, M.S. Bhagwat, A.A., Lavi, U., and Cregan, P.B. 1995. The use of microsatellite DNA markers for soybean genotype identification. Theor. Appl. Genet. 90: 43-48.
35. Sambrook, J., Fritsch, E.F., and Maniatis, T. 1989. Molecular cloning: a laboratory manual. 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
36. Senior, M.L., and Heun, M. 1993. Mapping maize microsatellites and polymerase chain reaction confirmation of the targeted repeats using a CT primer. Genome, 36: 884-889.
37. Senior, M.L., Chin, E.C.L., Lee, M., Stuber, C.W., and Smith, J.S.C. 1996. Simple sequence repeat markers developed from maize sequences found in the Genbank database: map construction. Crop Sci. 36: 1676-1683.
38. Shattuck-Eidens, D.M., Bell, R.N., Neuhausen, S.L., and Helentjaris, T. 1990. DNA sequence variation within maize and melon: observations from polymerase chain reaction amplification and direct sequencing. Genetics, 126: 207-217.
39. Tautz, D. 1989. Hypervariability of simple sequences as a general source of polymorphic DNA markers. Nucleic Acids Res. 17: 6463-6471.
40. Wang, Z., Weber, J.L., Zhong, G., and Tanksley, S.D. 1994. Survey of plant short tandem DNA repeats. Theor. Appl. Genet. 88: 1-6.
41. Weber, J.K., and May, P.E. 1989. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am. J. Hum. Genet. 44: 388-397.
42. Yu, K.F., and Pauls, K.P. 1993. Rapid estimation of genetic relatedness among heterogeneous populations of alfalfa by random amplification of bulked genomic DNA samples. Theor. Appl. Genet. 86: 788-794.