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Volumn 365, Issue , 1997, Pages 19-31

General problems in estimating nemertean relationships on ribosomal sequence data - An example using six monostiliferous species and mitochondrial 16S rDNA

Author keywords

Mitochondrial 16S rDNA; Nemertea; Substitution pattern; Weighted cladistic analyses

Indexed keywords


EID: 0031413025     PISSN: 00188158     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1003170224458     Document Type: Conference Paper
Times cited : (2)

References (67)
  • 1
    • 38249014621 scopus 로고
    • On the rationale and utility of weighting nucleotide sequence data
    • Albert, V. A. & B. D. Mishler, 1992. On the rationale and utility of weighting nucleotide sequence data. Cladistics 8:73-83.
    • (1992) Cladistics , vol.8 , pp. 73-83
    • Albert, V.A.1    Mishler, B.D.2
  • 2
    • 0019996193 scopus 로고
    • On the formation of spontaneous deletions: The importance of short sequence homologies in the generation of large deletions
    • Albertini, A. M., M. Hofer, M. P. Calos & J. H. Miller, 1982. On the formation of spontaneous deletions: the importance of short sequence homologies in the generation of large deletions. Cell 29:319-328.
    • (1982) Cell , vol.29 , pp. 319-328
    • Albertini, A.M.1    Hofer, M.2    Calos, M.P.3    Miller, J.H.4
  • 3
    • 0020670470 scopus 로고
    • Human mitochondria! DNA variation and evolution: Analysis of nucleotide sequences from seven individuals
    • Aquadro, C. F. & B. D. Greenberg, 1983. Human mitochondria! DNA variation and evolution: analysis of nucleotide sequences from seven individuals. Genetics 103: 287-312.
    • (1983) Genetics , vol.103 , pp. 287-312
    • Aquadro, C.F.1    Greenberg, B.D.2
  • 4
    • 0027937809 scopus 로고
    • Phylogeny of hard- And softtick taxa (Acari: Ixodida) based on mitochondria! 16S rDNA sequences
    • Black VI, W. C. & J. Piesman, 1994. Phylogeny of hard- and softtick taxa (Acari: Ixodida) based on mitochondria! 16S rDNA sequences. Proc. natn. Acad. Sci. 91: 10034-10038.
    • (1994) Proc. Natn. Acad. Sci. , vol.91 , pp. 10034-10038
    • Black VI, W.C.1    Piesman, J.2
  • 5
    • 0000367652 scopus 로고
    • The limits of amino acid sequence data in angiosperm phylogenetic reconstruction
    • Bremer, K., 1988. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution 42:795-803.
    • (1988) Evolution , vol.42 , pp. 795-803
    • Bremer, K.1
  • 6
    • 0020690563 scopus 로고
    • The structure of ribosomal RNA and its organization relative to ribosomal protein
    • Brimacombe, R., P. Maly & C. Zweib, 1983. The structure of ribosomal RNA and its organization relative to ribosomal protein. Prog. Nucleic Acids Res. Mol. Biol. 28: 148.
    • (1983) Prog. Nucleic Acids Res. Mol. Biol. , vol.28 , pp. 148
    • Brimacombe, R.1    Maly, P.2    Zweib, C.3
  • 9
    • 0020328686 scopus 로고
    • Mitochondria! DNA sequences of primates: Tempo and mode of evolution
    • Broivn, W. M., E. M. Prager, A. Wang & A. C. Wilson, 1982. Mitochondria! DNA sequences of primates: Tempo and mode of evolution. J. Mol. Evol. 18: 225-239.
    • (1982) J. Mol. E , vol.18 , pp. 225-239
    • Broivn, W.M.1    Prager, E.M.2    Wang, A.3    Wilson, A.C.4
  • 10
    • 0001321005 scopus 로고
    • An evaluation of cladistic and character analyses as hypothetico-deductive procedures, and the consequences for character weighting
    • Bryant, H. N., 1989. An evaluation of cladistic and character analyses as hypothetico-deductive procedures, and the consequences for character weighting. Syst. Zool. 38: 214-227.
    • (1989) Syst. Zool. , vol.38 , pp. 214-227
    • Bryant, H.N.1
  • 11
    • 0023576664 scopus 로고
    • Organization, structure, and evolution of mammalian mitochondria! genes
    • Cantatore, P. & C. Saccone, 1987. Organization, structure, and evolution of mammalian mitochondria! genes. Int. Rev. Cytol. 108: 149-208.
    • (1987) Int. Rev. Cytol. , vol.108 , pp. 149-208
    • Cantatore, P.1    Saccone, C.2
  • 12
    • 84989453447 scopus 로고
    • Choosing among multiple equally parsimonious cladograms
    • Carpenter, J. M., 1988. Choosing among multiple equally parsimonious cladograms. Cladistics 4:291-296.
    • (1988) Cladistics , vol.4 , pp. 291-296
    • Carpenter, J.M.1
  • 13
    • 0022423413 scopus 로고
    • The ribosomal RNA genes ofDrosophila mitochondria! DNA
    • Clary, D. O. & D. R. Wolstenholme, 1985. The ribosomal RNA genes ofDrosophila mitochondria! DNA. Nucleic Acids Res. 13: 4029-4045.
    • (1985) Nucleic Acids Res. , vol.13 , pp. 4029-4045
    • Clary, D.O.1    Wolstenholme, D.R.2
  • 14
    • 0026870188 scopus 로고
    • Variation and phylogenetic utility of the large ribosomal subunit of mitochondria! DNA from the insect order Hymenoptera
    • Derr, J. N., S. K. Davies, J. B. Woolley & R. A. Wharton, 1992. Variation and phylogenetic utility of the large ribosomal subunit of mitochondria! DNA from the insect order Hymenoptera. Mol. Phyl. Evol. 1: 136-147.
    • (1992) Mol. Phyl. Evol. , vol.1 , pp. 136-147
    • Derr, J.N.1    Davies, S.K.2    Woolley, J.B.3    Wharton, R.A.4
  • 15
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • Dixon, M. T. & D. M. Hillis, 1993. Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis. Mol. Biol. Evol. 10: 256-267.
    • (1993) Mol. Biol. E , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 17
    • 0030538836 scopus 로고    scopus 로고
    • Ototyphlonemertes correae sp. n. and a redescription of O. duplex Bürger 1895 (Nemertea, Monostilifera, Ototyphlonemertidae), with a phylogenetic consideration of the genus
    • Envall, M., 1996. Ototyphlonemertes correae sp. n. and a redescription of O. duplex Bürger 1895 (Nemertea, Monostilifera, Ototyphlonemertidae), with a phylogenetic consideration of the genus. J. Zool. London 238:253-277.
    • (1996) J. Zool. London , vol.238 , pp. 253-277
    • Envall, M.1
  • 18
    • 33749779447 scopus 로고    scopus 로고
    • Genetic distances and phylogenetic relationships among a few populations of interstitial nemerteans, based on mitochondria! 16S rDNA data
    • in press.
    • Envall, M. & P. Sundberg, 1997. Genetic distances and phylogenetic relationships among a few populations of interstitial nemerteans, based on mitochondria! 16S rDNA data. Zool. J. Linn. Soc. (in press).
    • (1997) Zool. J. Linn. Soc.
    • Envall, M.1    Sundberg, P.2
  • 19
    • 0027616542 scopus 로고
    • A phylogeny of new world leafhopper genera based on mitochondrial 16S ribosomal DNA sequences
    • Fang, Q., W. C. Black IV, D. Blocker & R. F. Whitcomb, 1993. A phylogeny of new world leafhopper genera based on mitochondrial 16S ribosomal DNA sequences. Mol. Phyl. Evol. 2: 119-131.
    • (1993) Mol. Phyl. Evol. , vol.2 , pp. 119-131
    • Fang, Q.1    Black IV, W.C.2    Blocker, D.3    Whitcomb, R.F.4
  • 20
    • 84963028421 scopus 로고
    • A successive approximations approach to character weighting
    • Farris, J. S., 1969. A successive approximations approach to character weighting. Syst.Zool. 18: 374-385.
    • (1969) Syst.Zool. , vol.18 , pp. 374-385
    • Farris, J.S.1
  • 21
    • 0001165539 scopus 로고
    • Cases in which parsimony or compatibility methods will be positively misleading
    • Felsenstein, J., 1978. Cases in which parsimony or compatibility methods will be positively misleading. Syst. Zool. 27: 40110.
    • (1978) Syst. Zool. , vol.27 , pp. 40110
    • Felsenstein, J.1
  • 22
    • 84959747425 scopus 로고
    • Towards defining the course of evolution: Minimum change for specific tree topology
    • Fitch, W. M., 1971. Towards defining the course of evolution: minimum change for specific tree topology. Syst. Zool. 20: 406-416.
    • (1971) Syst. Zool. , vol.20 , pp. 406-416
    • Fitch, W.M.1
  • 23
    • 33749715152 scopus 로고
    • Weighted parsimony: Does it work? In: Phylogenetic Analysis of DNA Sequences
    • Fitch, W. M. & J. Ye, 1992. Weighted parsimony: Does it work? In: Phylogenetic Analysis of DNA Sequences. Oxford Univ. Press, Oxford.
    • (1992) Oxford Univ. Press, Oxford.
    • Fitch, W.M.1    Ye, J.2
  • 25
    • 0024428798 scopus 로고
    • Origin and evolution of mitochondrial DNA
    • Gray, M. W., 1989. Origin and evolution of mitochondrial DNA. Ann. Rev. Cell Biol. 5: 25-50.
    • (1989) Ann. Rev. Cell Biol. , vol.5 , pp. 25-50
    • Gray, M.W.1
  • 26
    • 0020527670 scopus 로고
    • Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA
    • Greenberg, B. D., J. E. Newbold & A. Sugino, 1983. Intraspecific nucleotide sequence variability surrounding the origin of replication in human mitochondrial DNA. Gene 21: 3319.
    • (1983) Gene , vol.21 , pp. 3319
    • Greenberg, B.D.1    Newbold, J.E.2    Sugino, A.3
  • 27
    • 0028261409 scopus 로고
    • Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective
    • Gutell, R. R., N. Larsen & C. R. Woese, 1994. Lessons from an evolving rRNA: 16S and 23S rRNA structures from a comparative perspective. Microbiol. Rev. 58: 10-26.
    • (1994) Microbiol. Rev. , vol.58 , pp. 10-26
    • Gutell, R.R.1    Larsen, N.2    Woese, C.R.3
  • 28
    • 0027225783 scopus 로고
    • A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993
    • Gutell, R. R., M. W. Gray & M. N. Schnare, 1993. A compilation of large subunit (23S and 23S-like) ribosomal RNA structures: 1993. Nucleic Acids Res. 21: 3055-3074.
    • (1993) Nucleic Acids Res. , vol.21 , pp. 3055-3074
    • Gutell, R.R.1    Gray, M.W.2    Schnare, M.N.3
  • 29
    • 0024598146 scopus 로고
    • Fast and sensitive multiple sequence alignments on a microcomputer
    • Higgins, D. G. & P. M. Sharp, 1989. Fast and sensitive multiple sequence alignments on a microcomputer. CABIOS 5: 151-153.
    • (1989) Cabios , vol.5 , pp. 151-153
    • Higgins, D.G.1    Sharp, P.M.2
  • 30
    • 0027055554 scopus 로고
    • Signal, noise, and reliability in molecular phylogenetic analyses
    • Hillis, D. M. & J. P. Huelsenbeck, 1992. Signal, noise, and reliability in molecular phylogenetic analyses. J. Heredity 83: 189-195.
    • (1992) J. Heredity , vol.83 , pp. 189-195
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 31
    • 12044255023 scopus 로고
    • Success of phylogenetic methods in the four-taxon case
    • Hillis, D. M. & J. P. Huelsenbeck, 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42: 247-264.
    • (1993) Syst. Biol. , vol.42 , pp. 247-264
    • Hillis, D.M.1    Huelsenbeck, J.P.2
  • 32
    • 0022643552 scopus 로고
    • A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: Sequence, structure, evolution, and phylogenetic implications
    • Hixon, J. E. & W. M. Brown, 1986. A comparison of the small ribosomal RNA genes from the mitochondrial DNA of the great apes and humans: Sequence, structure, evolution, and phylogenetic implications. Mol. Biol. Evol. 3: 1-18.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 1-18
    • Hixon, J.E.1    Brown, W.M.2
  • 33
    • 84960557134 scopus 로고
    • Tree-length distribution skewness: An indicator of phylogenetic information
    • Huelsenbeck, J. P., 1991. Tree-length distribution skewness: an indicator of phylogenetic information. Syst. Zool. 3: 257-270.
    • (1991) Syst. Zool. , vol.3 , pp. 257-270
    • Huelsenbeck, J.P.1
  • 34
    • 0028929916 scopus 로고
    • A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes
    • Kambhampati, S., 1995. A phylogeny of cockroaches and related insects based on DNA sequence of mitochondrial ribosomal RNA genes. Proc. natn. Acad. Sci. USA 92: 2017-2020.
    • (1995) Proc. Natn. Acad. Sci. USA , vol.92 , pp. 2017-2020
    • Kambhampati, S.1
  • 35
    • 0003766436 scopus 로고
    • MacClade: Analysis of phylogeny and character evolution
    • Maddison, W. P. & D. R. Maddison, 1992. MacClade: Analysis of phylogeny and character evolution. Version 3.0. Sinauer Associates, Sunderland, Massachusetts.
    • (1992) Version , vol.3
    • Maddison, W.P.1    Maddison, D.R.2
  • 36
    • 0021101280 scopus 로고
    • Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coll
    • Maly, P. & R. Brimacombe, 1983. Refined secondary structure models for the 16S and 23S ribosomal RNA of Escherichia coll. Nucleic Acids Res. 11:7263-7286.
    • (1983) Nucleic Acids Res. , vol.11 , pp. 7263-7286
    • Maly, P.1    Brimacombe, R.2
  • 38
    • 0023480940 scopus 로고
    • Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
    • Moritz, C., T. E. Dowling & W. M. Brown, 1987. Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Ann. Rev. Ecol. Syst. 18: 269-292.
    • (1987) Ann. Rev. Ecol. Syst. , vol.18 , pp. 269-292
    • Moritz, C.1    Dowling, T.E.2    Brown, W.M.3
  • 39
    • 0000552546 scopus 로고
    • A rationale basis for a priori character weighting
    • Neff, N. A., 1986. A rationale basis for a priori character weighting. Syst. Zool. 35: 110-123.
    • (1986) Syst. Zool. , vol.35 , pp. 110-123
    • Neff, N.A.1
  • 40
    • 0021158357 scopus 로고
    • Structure of ribosomal RNA
    • Noller, H. F., 1984. Structure of ribosomal RNA. Ann. Rev. Biochem. 53: 119-162.
    • (1984) Ann. Rev. Biochem. , vol.53 , pp. 119-162
    • Noller, H.F.1
  • 41
    • 0025733603 scopus 로고
    • Ribosomal RNA and translation
    • Noller, H. F., 1991. Ribosomal RNA and translation. Ann. Rev. Biochem. 60: 191-227.
    • (1991) Ann. Rev. Biochem. , vol.60 , pp. 191-227
    • Noller, H.F.1
  • 42
    • 0019830772 scopus 로고
    • Secondary structure of 16S ribosomal RNA
    • Noller, H. F. & C. R. Woese, 1981. Secondary structure of 16S ribosomal RNA. Science 212:403-411.
    • (1981) Science , vol.212 , pp. 403-411
    • Noller, H.F.1    Woese, C.R.2
  • 43
    • 0015911961 scopus 로고
    • The assembly of bacterial ribosomes
    • Nomura, M., 1973. The assembly of bacterial ribosomes. Science 179: 864-873.
    • (1973) Science , vol.179 , pp. 864-873
    • Nomura, M.1
  • 44
    • 84989419202 scopus 로고
    • Testing methods of evolutionary tree construction
    • Penny, D. & M. D. Hendy, 1985. Testing methods of evolutionary tree construction. Cladistics 1: 266-278.
    • (1985) Cladistics , vol.1 , pp. 266-278
    • Penny, D.1    Hendy, M.D.2
  • 45
    • 0022472311 scopus 로고
    • Estimating the reliability of evolutionary trees
    • Penny, D. & M. D. Hendy, 1986. Estimating the reliability of evolutionary trees. Mol. Biol. Evol. 3:403-417.
    • (1986) Mol. Biol. Evol. , vol.3 , pp. 403-417
    • Penny, D.1    Hendy, M.D.2
  • 46
    • 0029091043 scopus 로고
    • Estimating substitution rates in ribosomal RNA genes
    • Rzhetsky, A., 1995. Estimating substitution rates in ribosomal RNA genes. Genetics 141:771-783.
    • (1995) Genetics , vol.141 , pp. 771-783
    • Rzhetsky, A.1
  • 47
    • 0023375195 scopus 로고
    • The neighbor joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & M. Nei, 1987. The neighbor joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4: 406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 49
    • 0024528375 scopus 로고
    • A hypothesis-independent method of character weighting for cladistic analysis
    • Sharkey, M. J., 1989. A hypothesis-independent method of character weighting for cladistic analysis. Cladistics 5: 63-86.
    • (1989) Cladistics , vol.5 , pp. 63-86
    • Sharkey, M.J.1
  • 50
    • 0020947272 scopus 로고
    • Parsimony in systematics: Philosophical issues
    • Sober, E., 1983. Parsimony in systematics: Philosophical issues. Ann. Rev. Ecol. Syst. 14: 335-357.
    • (1983) Ann. Rev. Ecol. Syst. , vol.14 , pp. 335-357
    • Sober, E.1
  • 51
    • 0345834096 scopus 로고
    • Common cause explanation
    • Sober, E., 1984. Common cause explanation. Philosophy of Science 51:212-241.
    • (1984) Philosophy of Science , vol.51 , pp. 212-241
    • Sober, E.1
  • 52
    • 84989475036 scopus 로고
    • A likelihood justification of parsimony
    • Sober, E., 1985. A likelihood justification of parsimony. Cladistics 1:209-233.
    • (1985) Cladistics , vol.1 , pp. 209-233
    • Sober, E.1
  • 53
    • 0010960765 scopus 로고
    • Parsimony and character weighting
    • Sober, E., 1986. Parsimony and character weighting. Cladistics 2: 28-42.
    • (1986) Cladistics , vol.2 , pp. 28-42
    • Sober, E.1
  • 57
    • 0017148262 scopus 로고
    • Complementary base pairing and the origin of substitution mutations
    • Topal, M. D.'& J. R. Fresco, 1976. Complementary base pairing and the origin of substitution mutations. Nature (London) 263: 285-289.
    • (1976) Nature (London) , vol.263 , pp. 285-289
    • Topal, M.D.1    Fresco, J.R.2
  • 58
    • 84960560599 scopus 로고
    • Character weighting and cladistic analysis
    • Wheeler, Q. D., 1986. Character weighting and cladistic analysis. Syst. Zool. 35: 102-109.
    • (1986) Syst. Zool. , vol.35 , pp. 102-109
    • Wheeler, Q.D.1
  • 59
    • 0023672228 scopus 로고
    • Paired sequence difference in ribosomal RNA: Evolutionary and phylogenetic implications
    • Wheeler, W. C. & R. L. Honeycutt, 1988. Paired sequence difference in ribosomal RNA: Evolutionary and phylogenetic implications. Mol. Biol. Evol. 5: 90-96.
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 90-96
    • Wheeler, W.C.1    Honeycutt, R.L.2
  • 61
    • 0025274493 scopus 로고
    • Phylogeny determination using dynamically weighted parsimony method
    • Williams, P. L. & W. M. Fitch, 1990. Phylogeny determination using dynamically weighted parsimony method. Meth. Enz. 183: 615-626.
    • (1990) Meth. Enz. , vol.183 , pp. 615-626
    • Williams, P.L.1    Fitch, W.M.2
  • 63
    • 0021012648 scopus 로고
    • A detailed analysis of the higher order structure of 16S-like ribosomal RNAs
    • Woese, C. R., R. Gutell, R. Gupta & H. F. Noller, 1983. A detailed analysis of the higher order structure of 16S-like ribosomal RNAs. Microbiol. Rev. 47: 621-669.
    • (1983) Microbiol. Rev. , vol.47 , pp. 621-669
    • Woese, C.R.1    Gutell, R.2    Gupta, R.3    Noller, H.F.4
  • 64
    • 0021985046 scopus 로고
    • Sequence evolution of Drosophila mitochondria! DNA
    • Wolstenholme, D. R. & D. O. Clary, 1985. Sequence evolution of Drosophila mitochondria! DNA. Genetics 109: 725-744.
    • (1985) Genetics , vol.109 , pp. 725-744
    • Wolstenholme, D.R.1    Clary, D.O.2
  • 65
    • 0026350122 scopus 로고
    • Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae)
    • Xiong, B. & T. D. Kocher, 1991. Comparison of mitochondrial DNA sequences of seven morphospecies of black flies (Diptera: Simuliidae). Genome 34: 306-311.
    • (1991) Genome , vol.34 , pp. 306-311
    • Xiong, B.1    Kocher, T.D.2
  • 66
    • 0027792106 scopus 로고
    • Phylogeny of sibling species of Simulium venustum and S. verecundum (Diptera: Simuliidae) based on sequences of the mitochondrial 16S rRNA gene
    • Xiong, B. & T. D. Kocher, 1993. Phylogeny of sibling species of Simulium venustum and S. verecundum (Diptera: Simuliidae) based on sequences of the mitochondrial 16S rRNA gene. Mol. Phyl. Evol. 2: 293-303.
    • (1993) Mol. Phyl. E , vol.2 , pp. 293-303
    • Xiong, B.1    Kocher, T.D.2
  • 67
    • 0019878165 scopus 로고
    • Secondary structure comparisons between the small subunit ribosomal RNA molecules from six different species
    • Zweib, C., C. Glotz & R. Brimacombe, 1981. Secondary structure comparisons between the small subunit ribosomal RNA molecules from six different species. Nucleic Acids Res. 9: 3621-3640.
    • (1981) Nucleic Acids Res. , vol.9 , pp. 3621-3640
    • Zweib, C.1    Glotz, C.2    Brimacombe, R.3


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