DNA synapomorphies for a variety of taxonomic levels from a cosmid library from the new world bat Macrotus waterhousii

Systematic Biology

Volumn 46, Issue 4, 1997, Pages 579-589

  Baker, Robert J ^a   Longmire, Jonathan L ^b   Maltbie, Mary ^a   Hamilton, Meredith J ^a,c   Van Den Bussche, Ronald A ^a,c  

^a TEXAS TECH UNIVERSITY   (United States)

^b LOS ALAMOS NATIONAL LABORATORY   (United States)

^c OKLAHOMA STATE UNIVERSITY   (United States)

Author keywords

Cosmid library; DNA synapomorphies; Genome; Macrotus waterhousii; Phylogenetic screening; Rhinolophoidea; Taxonomic levels

Indexed keywords

MACROTUS; MACROTUS WATERHOUSII; MAMMALIA; MICROCHIROPTERA; PHYLLOSTOMIDAE;

DNA;

ANIMAL; ARTICLE; BAT; CLASSIFICATION; COSMID; FLUORESCENCE IN SITU HYBRIDIZATION; GENE LIBRARY; GENETIC MARKER; GENETIC PROCEDURES; GENETICS; PHYLOGENY;

ANIMALS; CHIROPTERA; COSMIDS; DNA; GENE LIBRARY; GENETIC MARKERS; GENETIC TECHNIQUES; IN SITU HYBRIDIZATION, FLUORESCENCE; PHYLOGENY;

EID: 0031389490     PISSN: 10635157     EISSN: None     Source Type: Journal    
DOI: 10.1093/sysbio/46.4.579     Document Type: Article

References (51)

1. ADEGOKE, J. A., Ú. ARNASON, AND B. WIDEGREN. 1993. Sequence organization and evolution, in all extant whalebone whales, of a DNA satellite with terminal chromosome localization. Chromosoma 102:382-388.
2. ARNASON, Ú., AND P. B. BEST. 1991. Phylogenetic relationships within the Mysticeti (whalebone whales) based upon studies of highly repetitive DNA in all extant species. Hereditas 114:263-269.
3. ARNASON, Ú., S. GRETARSDOTTIR, AND B. WIDEGREN. 1992. Mysticeti (baleen whale) relationships based upon the sequence of the common cetacean DNA satellite. J. Mol. Evol. 9:1018-1028.
4. BACHMANN, L., E. MÜLLER, M. L. CARIOU, AND D. SPERLICH. 1992. Cloning and characterization of KM190, a specific satellite DNA family of Drosophila kitumensis and D. microlabis. Gene 120:267-269.
5. BAKER, R. J., R. L. HONEYCUTT, AND R. A. VAN DEN BUSSCHE. 1991a. Examination of monophyly of bats: Restriction map of the ribosomal DNA cistron. Bull. Am. Mus. Nat. Hist. 206:42-53 .
6. BAKER, R. J., C. S. HOOD, AND R. L. HONEYCUTT. 1989. Phylogenetic relationships and classification of the higher taxonomic levels of the New World bat family Phyllostomidae. Syst. Zool. 38:228-238.
7. BAKER, R. J., AND D. H. KASS. 1994. Comparison of chromosomal distribution of a retroposon (LINE) and a retrovirus-like element mys in Peromyscus maniculatus and P. leucopus. Chrom. Res. 2:185-189.
8. BAKER, R. J., M. J. NOVACEK, AND N. B. SIMMONS. 1991b. On the monophyly of bats. Syst. Zool. 40: 216-231.
9. BAKER, R. J., AND M. B. QUMSIYEH. 1988. Methods in chiropteran mitotic chromosomal studies. Pages 425-135 in Ecological and behavioral methods for the study of bats (T. H. Kunz, ed.). Smithsonian Institution Press, Washington, D.C.
10. BAKER, R. J., AND H. A. WICHMAN. 1990. Retrotransposon mys is concentrated on the sex chromosomes: Implications for copy number containment. Evolution 44:2083-2088.
11. BECKMAN, J. S., AND J. L. WEBER. 1992. Survey of human and rat microsatellites. Genomics 12:627-631.
12. BURTON, F. H., D. D. LOEB, C. F. VIOLIVA, S. L. MARTIN, M. H. EDGELL, AND C. A. HUTCHISON III. 1986. Conservation throughout Mammalia and extensive protein-encoding capacity of the highly repeated DNA long interspersed sequence one. J. Mol. Biol. 187:291-304.
13. DEININGER, P. L. 1989. SINEs: Short interspersed repeated DNA elements in higher eukaryotes. Pages 619-636 in Mobile DNA (D. E. Berg and M. M. Howe, eds.). American Society of Microbiologists, Washington, D.C.
14. DEININGER, P. L., AND G. R. DANIELS. 1986. The recent evolution of mammalian repetitive DNA elements. Trends Genet. 2:76-80.
15. DEININGER, P. L., AND V. K. SLAGEL. 1988. Recently amplified Alu family members share a common parental Alu sequence. Mol. Cell. Biol. 8:4566-4569.
16. DOVER, G. A. 1982. Molecular drive: A cohesive mode of species evolution. Nature 299:111-117.
17. DOVER, G. A. 1986. Molecular drive in multigene families: How biological novelties arise, spread and are assimilated Trends Genet. 2:159-165.
18. DURFY, S. J., AND H. F. WILLARD. 1990. Concerted evolution of primate alpha satellite DNA: Evidence for an ancestral sequence shared by gorilla and human X chromosome alpha satellite. J. Mol. Biol. 216:555-566.
19. GOUY, M., AND W.-H. LI. 1989. Molecular phylogeny of the kingdoms Animalia, Plantae, and Fungi. Mol. Biol. Evol. 6:109-122.
20. HAMILTON, M. J., R. L. HONEYCUTT, AND R. J. BAKER. 1990. Intragenomic movement, sequence amplification and concerted evolution in satellite DNA in harvest mice, Reithrodontomys: Evidence from in situ hybridization. Chromosoma 99:321-329.
21. HAMILTON, M. J., G. HONG, AND H. A. WICHMAN. 1992. Intragenomic movement and concerted evolution of satellite DNA in Peromyscus: Evidence from in situ hybridization. Cytogenet. Cell Genet. 60:40-44.
22. HUTCHISON, C. A., III, S. C. HARDIES, D. D. LOEB, W. R. SHEHEE, AND M. H. EDGELL. 1989. LINEs and related retroposons: Long interspersed repeated sequences in the eukaryotic genome. Pages 593-617 in Mobile DNA (D. E. Berg and M. M. Howe, eds.). American Society of Microbiologists, Washington, D.C.
23. JANECEK, L. L., J. L. LONGMIRE, H. A. WICHMAN, AND R. J. BAKER. 1993. Organization of repetitive elements in the genome of the white-footed mouse, Peromyscus leucopus. Mamm. Genome 4:374-381.
24. KOOPMAN, K. F. 1984. A synopsis of the families of bats, Part IV. Bat Res. News 25:25-27.
25. KOOPMAN, K. F. 1993. Order Chiroptera. Pages 137-247 in Mammal species of the world, 2nd edition (D. E. Wilson and D. M. Reeder, eds.). Smithsonian Institution Press, Washington, D.C.
26. KORENBERG, J. R., AND M. C. RYKOWSKI. 1988. Human genome organization: Alu, lines and the molecular structure of metaphase chromosome bands. Cell 53: 391-400.
27. LEE, R. N., J. C. JASKULA, R. A. VAN DEN BUSSCHE, R. J. BAKER, AND H. A. WICHMAN. 1996. Retrotransposon mys was active during evolution of the Peromyscus leucopus-maniculatus complex. J. Mol. Evol. 42:44-51.
28. LONGMIRE, J. L., R. E. AMBROSE, N. C. BROWN, T. J. CADE, T. MAECHTLE, W. S. SEEGAR, F. P. WARD, AND C. M. WHITE. 1991. Use of sex-linked minisatellite fragments to investigate genetic differentiation and migration of North American populations of the peregrine falcon (Falco peregrinus). Pages 217-229 in DNA fingerprinting: Approaches and applications (T. Burke, G. Dolf, A. Jeffreys, and R. Wolff, eds.). Birkhäuser, Basel, Switzerland.
29. LONGMIRE, J. L., N. C. BROWN, L. J. MEINCKE, M. L. CAMPBELL, K. L. ALBRIGHT, J. J. FAWCETT, E. W. CAMPBELL, R. K. MOYZIS, C. E. HILDEBRAND, G. A. EVANS, AND L. L. DEAVEN. 1993. Construction and characterization of partial digest DNA libraries made from flow-sorted human chromosome 16. Genet. Anal. Tech. Appl. 10(3-4):69-76.
30. LONGMIRE, J. L., A. K. LEWIS, N. C. BROWN, J. M. BUCKINGHAM, L. C. CLARK, M. D. JONES, L. J. MEINCKE, J. MEYNE, R. L. RATLEFF, F. A. RAY, R. P. WAGNER, AND R. K. MOYZIS. 1988. Isolation and molecular characterization of a highly polymorphic centromeric tandem repeat in the family Falconidae. Genomics 2: 14-24.
31. LOVE, J., AND P. DEININGER. 1992. Characterization and phylogenetic significance of a repetitive DNA sequence from whooping cranes (Grus americana). Auk 109:73-79.
32. MCMILLAN, J., T. MAHONY, J. E. N. VERNON, AND D. J. MILLER. 1991. Nucleotide sequencing of highly repetitive DNA from seven species in the coral genus Acropora (Cnidaria: Scleractinia) implies a division contrary to morphological criteria. Mar. Biol. 110: 323-327.
33. MCMILLAN, J., AND D. J. MILLER. 1990. Highly repeated DNA sequences in the scleractinian coral genus Acropora: Evaluation of cloned repeats as taxonomic probes. Mar. Biol. 104:483-487.
34. MOYZIS, R. K., D. C. TORNEY, J. MEYNE, J. M. BUCKINGHAM, J. R. WU, C. BURK, K. M. SIROTKIN, AND W. B. GOAD. 1989. The distribution of interspersed repetitive DNA sequences in the human genome. Genomics 4:273-289.
35. PETTIGREW, J. D. 1986. Flying primates? Megabats have the advanced pathways from eye to midbrain. Science 231:1304-1306.
36. PETTIGREW, J. D. 1991a. Wings or brain? Convergent evolution in the origins of bats. Syst. Zool. 40:199-215.
37. PETTIGREW, J. D. 1991b. A fruitful, wrong hypothesis? Response to Baker, Novacek, and Simmons. Syst. Zool. 40:231-239.
38. PIERSON, E. D. 1986. Molecular systematics of the Microchiroptera: Higher taxonomic relationships and biogeography. Ph.D. Dissertation, Univ. California, Berkeley.
39. SAMBROOK, J., E. F. FRITSCH, AND T. MANIATIS. 1989. Molecular cloning: A laboratory manual, 2nd edition. Cold Spring Harbor Laboratory Press, Planview, New York.
40. SIMMONS, N. B. 1994. The case for chiropteran monophyly. Am. Mus. Novit. 3103:1-54.
41. SIMMONS, N. B., M. J. NOVACEK, AND R. J. BAKER. 1991. Approaches, methods, and the future of the chiropteran monophyly controversy: A reply to J. D. Pettigrew. Syst. Zool. 40:239-243.
42. SMITH, J. D. 1976. Chiropteran evolution. Spec. Publ. Mus. Tex. Tech Univ. 10:46-69.
43. SOUTHERN, E. M. 1975. Detection of specific sequences among DNA fragments separated by gel electrophoresis. J. Mol. Biol. 98:503-517.
44. n repetitive sequences in mammalian genomes. Genomics 10:807-815.
45. TAUTZ, D., AND M. RENZ. 1984. Simple sequences are ubiquitous repetitive components of eukaryotic genomes. Nucleic Acids Res. 12:4127-4138.
46. VAN DEN BUSSCHE, R. A. 1991. Phylogenetic analysis of restriction site variation in the ribosomal DNA complex of New World leaf-nosed bat genera. Syst. Zool. 40:420-432.
47. VAN DEN BUSSCHE, R. A., R. J. BAKER, H. A. WICHMAN, AND M. J. HAMILTON. 1993. Molecular phylogenetics of Stenodermatini bat genera: Congruence of data from nuclear and mitochondrial DNA. Mol. Biol. Evol. 10:944-959.
48. VAN DEN BUSSCHE, R. A., J. L. LONGMIRE, AND R. J. BAKER. 1995. How bats achieve a small C-value: Frequency of repetitive DNA in Macrotus. Mamm. Genome 6:521-525.
49. VAN VALEN, L. 1979. The evolution of bats. Evol. Theory 4:104-121.
50. VASSART, G., M. GEORGES, R. MONSIEUR, H. BROCAS, A. S. LEQUARRE, AND D. CRISTOPHIE. 1987. A sequence in M13 phage detects hypervariable minisatellites in human and animal DNA. Science 235: 683-684.
51. WICHMAN, H. A., S. S. POTTER, AND D. S. PINE. 1985. Mys, a family of mammalian transposable elements isolated by phylogenetic screening. Nature 317:77-81.