A New PCR System for Agrobacterium tumefaciens Detection Based on Amplification of T-DNA Fragment

Acta Microbiologica Polonica

Volumn 46, Issue 2, 1997, Pages 145-156

  Sachadyn, Paweł ^a   Kur, Józef ^a  

^a GDANSK UNIVERSITY OF TECHNOLOGY   (Poland)

Author keywords

[No Author keywords available]

Indexed keywords

AMIDASE; BACTERIAL DNA; PLANT DNA;

ARTICLE; GENETICS; ISOLATION AND PURIFICATION; METHODOLOGY; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PLASMID; POLYMERASE CHAIN REACTION; RHIZOBIUM RADIOBACTER; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT;

AMIDOHYDROLASES; BASE SEQUENCE; DNA, BACTERIAL; DNA, PLANT; MOLECULAR SEQUENCE DATA; PLANT DISEASES; PLASMIDS; POLYMERASE CHAIN REACTION; RHIZOBIUM RADIOBACTER; SENSITIVITY AND SPECIFICITY; SEQUENCE ALIGNMENT; SOIL MICROBIOLOGY;

EID: 0031304108     PISSN: 01371320     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Article

References (60)

1. Akiyoshi D.E., Morris R.O., Hinz R., Mischke B.S., Kosuge T., Garfinkel D.J., Gordon M.P. and Nester E. W. 1983. Cytokinin/auxin balance in crown gall tumor is regulated by specific loci in the T-DNA. Proc. Natl. Acad. Sci. USA 80: 407-411.
2. Alarçon B., Lopez M.M., Cambra M. and Oritz J. 1987. Comparative study of Agrobacterium biotype 1, 2 and 3 by electrophoresis and serological methods. J. Appl. Bacteriol. 62: 295-308
3. Baron C. and Zambryski P.C. 1996. Plant transformation: a pilus in Agrobacterium T-DNA transfer. Curr. Biol. 6: 1567-1569.
4. Barry G.F., Rogers S.G., Fraley R.T. and Brand L. 1984. Identification of a cloned cytokinin biosynthetic gene. Proc. Natl. Acad. Sci. USA, 81: 4776-4780.
5. Beauchamp C.J., Chilton W.S., Dion P. and Antou H. 1990. Fungal catabolism of crown gall opines. Appl. Environ. Microbiol. 56: 150-155.
6. Bouchez H. and Tourneur J. 1991. Organization of the agropine synthesis region of the T-DNA of the Ri plasmid from Agrobacterium rhizogenes. Plasmid, 25: 25-39.
7. Bouzar H. and Moore L.W. 1987. Complementary methodologies to identify specific Agrobacterium strains. Appl. Environ. Microbiol. 53: 2660-2665.
8. Caplan A., Herrera-Estrella L., Inzé D., Van Haute E., Van Montagu M., Schell J. and Zambryski P. 1983. Introduction of genetic material into plant cells. Science, 222: 815-821.
9. Chilton M.D., Drummond M.H., Merlo D.J., Sciaky D., Montoya A.L., Gordon M.P. and Nester E.W. 1980. Stable incorporation of plasmid DNA into higher % plant cells: the molecular basis of crown gall tumorigenesis. Cell, 11: 263-271.
10. Clarence I. and Kado P.D. 1991. Moleculary mechanisms of crown gall tumorigenesis. Critical Reviews in Plant Sciences, 10(1): 1-32.
11. Close T.J., Tait R.C., Rempel H.C., Hirooka T., Kim L. and Kado C.I. 1987. Molecular characterization of the virC genes of the Ti plasmid. J.Bacteriol. 169: 2336-2344.
12. Coburn J.T., Lytle F.E. and Hubert D.N. 1986. Enhanced instrumental sensitivity and selectivity for aminopeptidase profiling. Anal. Biochem. 154: 305-310.
13. Dong L.-C., Sun C.-W., Thies K.L., Luthe D.S. and Graves C.H., Jr. 1992. Use of polymerase chain reaction to detect pathogenic strains of Agrobacterium. Phytopathology, 82: 434-438.
14. Duban M.E., Lee K. and Lynn D.G. 1993. Strategies in pathogenesis: mechanistic specificity in the detection of generic signals. Mol. Microbiol. 7: 637-645.
15. Fortin C., Nester E.W. and Dion P. 1992. Growth inhibition and loss of virulence in cultures of Agrobacterium tumefaciens treated with acetosyringone. J. Bacteriol. 174: 5676-5685.
16. Fullner K.J. nad Nester E.W. 1996. Temperature affects the T-DNA transfer machinery of Agrobacterium tumefaciens. J. Bacteriol. 178: 1498-1504.
17. Furukawa K., Hasunama K., Hatanaka S. and Hayashi T. 1984. Detection of tumor-inducing plasmid DNA sequence in Agrobacterium tumefaciens by DNA-DNA hybridization. Radioisotopes, 33: 543-546.
18. Gallie D.R., Hagiya M. and Kado C.I. 1985. Analysis of Agrobacterium tumefaciens plasmid pTiC58 replication region a novel high-copy-number derivative. J. Bacteriol. 161: 1034-1041.
19. Gaudin V., Vrain T. and Jouanin L. 1994. Bacterial genes modifying hormonal balances in plant. Plant Physiol. Biochem. 32(1): 11-29.
20. Genetello C., Van Larebeke N., Holsters M., De Picker A., Van Montagu M. and Schell J. 1997. Ti plasmids of Agrobacterium as conjugative plasmids. Nature, 265: 561-563.
21. Graham P.H. 1971. Serological studies with Agrobacterium radiobacter, A. tunefaciens, and Rhizobium strains. Arch. Microbiol. 78: 70-75.
22. Hamilton R.H. and Fall M.Z. 1971. The loss of tumor-initiating ability in Agrobacterium tumefaciens by incubation at high temperature. Experientia, 27: 229-230.
23. Hass J.H., Moore L.W., Ream W. and Manulis S. 1995. Universal PCR primers for detection of ohytopatogenic Agrobacterium strains. Appl. Environ. Microbiol. 61: 2879-2884.
24. Holmes B. and Roberts P. 1981. The classification, identification nad nomenclature of Agrobacteria. J. Appl. Bacteriol. 50: 443-467.
25. Inzé D., Follin A., Van Lijsebettens M., Simones C., Genetello M., Van Montagu M. and Schell J. 1984. Genetic analysis of the individual T-DNA genes of Agrobacterium tumefaciens: further evidence that two genes are involved in indole-3-acetic acid synthesis. Mol. Gen. Genet. 194: 265-274.
26. Janssen B. and Gardner R.C. 1990. Localized transient expression of GUS in leaf discs following cocultivation with Agrobacterium. Plant. Mol. Biol. 14: 61-72.
27. Jorgensen R., Snyder C. and Jones J.D.G. 1987. T-DNA is organized predominantly in inverted repeat structures in plants transformed with Agrobacterium tumefaciens C58 derivatives. Mol. Gen. Genet. 207: 471-377.
28. Kerr A. 1971. Acquisition of virulence by non pathogenic isolates of Agrobacterium radiobacter. Physiol. Plant. Pathol. 1: 241-246.
29. Kerr A., Manigault P. and Tempe J. 1977. Transfer of virulence in vivo and in vitro in Agrobacterium. Nature, 265: 560-561.
30. Klee H.J., White F.F., Iyer V.N., Gordon M.P. and Nester E.W. 1983. Mutational analysis of the virulence region of an Agrobacterium tumefaciens Ti plasmid. J. Bacteriol. 153: 878-883.
31. Koekman B.P., Hooykaas P.J.J. and Schilperoort R.A. 1982. A functional map of the replicator region of the octopine Ti plasmid. Plasmid, 7: 119-132.
32. Kottowski R., Kaczmarek M., Kur J. and Rudnicka W. 1996. Differentiation of Listeria monocytogenes on the basis of hemolytic and phosphatidylinositol specific phospholipase C activity and by PCR method. Pol. J. Food. Nutr. Sci. 5/46: 99-109.
33. Michel M.F., Brasileiro A.C.M., Deprierreux C., Otten L., Delmotte F. and Jouanin L. 1990. Identification of different Agrobacterium strains isolated from the same forest nursery. Appl. Environ. Microbiol. 56: 3537-3545.
34. Moore L.W. 1988. Use of Agrobacterium radiobacter in agricultural ecosystems. Microbiol. Sci. 5: 92-95.
35. Nautiyal C.S. and Dion P. 1990. Characterization of the opine utilizing microflora associated with samples of soils and plants. Appl. Environ. Microbiol. 56: 2576-2579.
36. Nesme X., Leclerc M.C. and Bardin R. 1990. PCR detection of an original endsymbiont: the Ti plasmid of Agrobacterium tumefaciens p. 47-50. In: Nardon P., Gianinazzi-Pearson V., Grenier A.M., Margulis L., Smith D.C., Endocytobiology IV, INRA, Paris.
37. Nesme X., Ponsonnet C., Picard C. and Normand P. 1992. Chromosomal and pTi genotypes of Agrobacterium strains isolated from Populus tumors in two nurseries. FEMS Microbiology Ecology, 101: 189-196.
38. Nowak A. and Kur J. 1995. Genomic species typing of Acinetobacters by polymerase chain amplification of the recA gene. FEMS Microbiol, Lett. 130: 327-332.
39. Ooms G., Bakker A., Molendijk J., Wullems G.J., Gordon M.P., Nester E.W. and Schilperoort R.A. 1982. T-DNA organization in homogenous and heterogenous octopine-type crown gall tissues of Nicotiana tabacum. Cell, 30: 580-597.
40. Otten L.A. and Schilperoort R.A. 1978. A rapid micro scale method for detection of lysopine and nopaline dehydrogenase activities. Biochim. Biophys. Acta 527: 497-500.
41. Picard C., Ponsonnet C., Paget E., Nesme X. and Simonet P. 1992. Detection nad enumeration of bacteria in soil by direct DNA extraction and polymerase chain reaction. Appl. Environ. Microbiol. 58: 2717-2722.
42. Ponsonnet and Nesme X. 1994. Identification of Agrobacterium strains by PCR-RFLP analysis of pTi and chromosomal regions. Arch. Microbiol. 161: 300-309.
43. Ream L.W., Gordon M.P. and Nester E.W. 1983. Multiple mutations in the T region of the Agrobacterium tumefaciens tumor-inducing plasmid. Proc. Natl. Acad. Sci. USA, 80: 1660-1664.
44. rd International Student's Scientific Conference, Gdańsk.
45. Sawada H., Ieki H. and Matsuda I. 1995. PCR detection of Ti and Ri plasmids from phytopathogenic Agrobacterium strains. Appl. Environ. Microbiol. 61: 828-831.
46. Schroeder G., Waffenschmidt S., Weiler E.W. and Schroeder J. 1984. The T-region of Ti plasmids codes for an enzyme synthesizing indole-3-acetic acid. Eur. J. Biochem. 138: 387.
47. Schroth M.N., Weinhold A.R., McCain A.M., Hildebrand D.C. and Ross N. 1971. Biology nad control of Agrobacterium tumefaciens. Hilgardia, 40(15): 537-551.
48. Shirasu K., Koukouliková-Nicola Z., Hohn B. and Kado C.I. 1994. An inner membrane associated protein essential for T-DNA transfer from Agrobacterium tumefaciens to plants exhibits ATPase activity and similarity to conjugative transfer genes. Mol. Microbiol. 4: 1153-1163.
49. Tabata S., Hooykaas P.J.J. and Oka A. 1989. Sequence determination and characterization of the replicator region in the tumor-inducing plasmid pTiB6S3. J. Bacteriol. 171: 1665-1672.
50. Tinland B. and Hohn B. 1995. Recombination between prokaryotic and eukaryotic DNA: integration of Agrobacterium tumefaciens T-DNA into the plant genome. Genet. Eng. (N Y) 17: 209-229.
51. Tinland B., Hohn B. and Puchta H. 1994. Agrobacterium tumefaciens transfers single stranded transfered DNA (T-DNA) into the plant cell nucleus. Proc. Natl. Acad. Sci. USA, 91: 8000-8004.
52. Trembaly G., Gagliardo R., Chilton W.S. and Dion P. 1987. Diversity among opine-utilizing bacteria identification of coryneform isolates. Appl. Environ. Microbiol. 53: 1519-1524.
53. Van Larebeke N., Engler G., Holsters M., Van den Elsacker S., Zaenen I., Schilpreroort R.A. and Schell J. 1974. Large plasmid in Agrobacterium tumefaciens essential for crown gall inducing activity. Nature, 252: 169-170.
54. Von Bodman S.B., McCutchan J.E. and Farrand S.K. 1989. Characterization of conjugal transfer functions of Agrobacterium tumefaciens Ti plasmid pTiC58. J. Bacteriol. 171: 5281-5289.
55. Watson B., Currier T.C., Gordon M.P., Chilton M.D. and Nester E.W. 1975. Plasmid required for virulence of Agrobacterium tumefaciens. J. Bacteriol. 123: 255-264.
56. White P.R. and Barun A.C. 1941. Crown-gall production by bacteria free tumour tissues. Science, 94: 239-241.
57. White P.R. and Braun A.C. 1942. A cancerous neoplasms of plants. Autonomous, bacteria-free crown gall tissue. Crown-gall production by bacteria free tumour tissues. Cancer Res. 2: 597-617.
58. White F.F. and Nester E.W. 1980. Hairy root: plasmid encodes virulence traits in Agrobacterium rhizogenes. J. Bacteriol. 141: 1134-1141.
59. Yang N.S., Platt S.G. and Chirstou P. 1987. Detection of opines by colorimetric assay. Anal. Biochem. 160: 342-345.
60. Yanofsky M., Lowe B., Montoya A., Rubin R., Krul W., Gordon M. and Nester E.W. 1985. Molecular and genetic analysis of factors controlling host range in Agrobacterium tumefaciens. Mol. Gen. Genet. 201: 237-246.