Folding α-helical membrane proteins: Kinetic studies on bacteriorhodopsin

Folding and Design

Volumn 2, Issue 6, 1997, Pages

  Booth, Paula J ^a  

^a IMPERIAL COLLEGE LONDON   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIORHODOPSIN; MEMBRANE PROTEIN;

CHEMICAL STRUCTURE; CHEMISTRY; KINETICS; PROTEIN FOLDING; PROTEIN SECONDARY STRUCTURE; REVIEW;

BACTERIORHODOPSINS; KINETICS; MEMBRANE PROTEINS; MODELS, MOLECULAR; PROTEIN FOLDING; PROTEIN STRUCTURE, SECONDARY;

EID: 0031302710     PISSN: 13590278     EISSN: None     Source Type: Journal    
DOI: 10.1016/s1359-0278(97)00045-x     Document Type: Article

References (46)

1. London, E. & Khorana, H.G. (1982). Denaturation and renaturation of bacteriorhodopsin in detergents and lipid-detergent mixtures. J. Biol. Chem. 257, 7003-7011.
2. Huang, K.-S., Bayley, H., Liao, M.-J., London, E. & Khorana, H.G. (1981). Refolding of an integral membrane protein. Denaturation, renaturation and reconstitution of intact bacteriorhodopsin and two proteolytic fragments. J. Biol. Chem. 256, 3802-3809.
3. Henderson, R., Baldwin, J.M., Ceska, T.A., Zemlin, F., Beckmann, E. & Downing, K.H. (1990). Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy. J. Mol. Biol. 213, 899-929.
4. Booth, P.J., Ritsch, S.L, Stern, L.J., Greenhalgh, D.A., Kim, P.S. & Khorana, H.G. (1995). Intermediates in the folding of the membrane protein bacteriorhodopsin. Nat. Struct. Biol. 2, 139-143.
5. Kühlbrandt, W. & Wang, D.N. (1991 ). Three-dimensional structure of plant light-harvesting complex determined by electron crystallography. Nature 350, 130-134.
6. Plumley, F.G. & Schmidt, G.W. (1987). Reconstitution of chlorophyll a/b light-harvesting complexes: xanthophyll-dependent assembly and energy transfer. Proc. Natl Acad Sci. USA 84, 146-150.
7. Paulsen, H., Rümler, U. & Rüdiger, W. (1990). Reconsititution of pigment-containing complexes from light-harvesting chlorophyll a/b-binding protein overexpressed in Escherichia coli. Planta 181, 204-211.
8. Booth, P.J. & Paulsen, H. (1996). Assembly of the light harvesting chlorophyll a/b complex in vitro. Time-resolved fluorescence measurements. Biochemistry 35, 5103-5108.
9. Weiss, M.S., Abele, U., Weckesser, J., Weite, W., Schiltz, E. & Schulz, G.E. (1991). Molecular architecture and electrostatic properties of a bacterial porin. Science 254, 1627-1630.
10. Cowan, S.W., et al., & Rosenbusch, J.P. (1992). Crystal structures explain functional properties of two E coli porins. Nature 358, 727-733.
11. Eisele, J.-L & Rosenbusch, J.P. (1990). In vitro folding and oligomerization of a membrane protein. J. Biol. Chem. 265, 10217-10220.
12. Surrey, T. & Jähnig, F. (1995). Kinetics of folding and membrane insertion of a β-barrel membrane protein. J. Biol. Chem. 270, 28199-28203.
13. Grigorieff, N., Ceska, T.A., Downing, K.H., Baldwin, J.M. & Henderson, R. (1996). Electron-crystallographic refinement of the structure of bacteriorhodopsin. J. Mol. Biol. 259, 393-421.
14. Popot, J.-L, Gerchman, S.-E. & Engelman, D.M. (1987). Refolding of bacteriorhodopsin in lipid bilayers. A thermodynamically controlled two-stage process. J. Mol. Biol. 198, 655-676.
15. Khorana, H.G. (1988). Bacteriorhodopsin, a membrane protein that uses light to translocate protons. J. Biol. Chem. 263, 7439-7442.
16. Liao, M.-J., London, E. & Khorana, H.G. (1983). Regeneration of the native bacteriorhodopsin structure from two chymotryptic fragments. J. Biol. Chem. 258, 9949-9955.
17. Kahn, T.W. & Engelman, D.M. (1992). Bacteriorhodopsin can be refolded from two independently stable transmembrane helices and the complementary five-helix fragment. Biochemistry 31, 6144-6151.
18. Popot, J.-L. & Engelman, D.M. (1990). Membrane protein folding and oligomerization: the two stage model. Biochemistry 29, 4031-4037.
19. Anukanth, A. & Khorana, H.G. (1994). Structure and function in rhodopsin. Requirements of a specific structure for the intradiscal domain. J. Biol. Chem. 269, 19738-19744.
20. Riley, M.L, Wallace, B.A., Flitsch, S.L. & Booth, P.J. (1997). Slow a helical formation during folding of a membrane protein. Biochemistry 36, 192-196.
21. Booth, PJ. & Farooq, A. (1997). Transient intermediates in the regeneration of bacteriorhodopsin investigated by time-resolved absorption spectroscopy. Eur. J. Biochem. 246, 674-680.
22. Surrey, T. & Jähnig, F. (1992). Refolding and oriented insertion of a membrane protein into a lipid bilayer. Proc. Natl Acad. Sci. USA 89, 7457-7461.
23. Sirokman, G. & Fasman, G.D. (1993). Refolding and proton-pumping activity of a polyethylene-glycol bacteriorhodopsin water-soluble conjugate. Protein Sci. 2, 1161-1170.
24. Wei, J. & Fasman, G.D. (1995). A polyethylene glycol) water-soluble conjugate of porin: refolding to the native state. Biochemistry 34, 6408-6415.
25. Booth, P.J., Farooq, A. & Flitsch, S.L. (1996). Retinal binding during folding and assembly of the membrane protein bacteriorhodopsin. Biochemistry 35, 5902-5909.
26. Kuwajima, K. (1989). The molten globule state as a clue for understanding the folding and cooperativity of globular-protein structure. Proteins 6, 87-103.
27. Matthews, C.R. (1993). Pathways of protein folding. Annu. Rev. Biochem. 62, 653-683.
28. Roder, H. & Colon, W. (1997). Kinetic role of early intermediates in protein folding. Curr. Opin. Struct. Biol. 7, 15-28.
29. Eaton, W.A., Munoz, V., Thompson, P.A., Chan, C.-K. & Hofrichter, J. (1997). Submillisecond kinetics of protein folding. Curr. Opin. Struct. Biol. 1, 10-14.
30. Booth, P.J., et al., & Wright, P. (1997). Evidence that bilayer bending rigidity affects membrane protein folding. Biochemistry 36, 197-203.
31. Mao, D. & Wallace, B.A. (1984). Differential light scattering and absorption flattening. Optical effects are minimal in the circular dichroism spectra of small unilamellar vesicles. Biochemistry 23, 2667-2673.
32. Popot, J.-L, de Vitry, C. & Atteia, A. (1994). Folding and assembly of integral membrane proteins: an introduction. In Membrane Protein Structure. (S.H. White, ed.), pp. 41-96, Oxford University Press, New York.
33. Brandts, J.F., Halvorson, H.R. & Brennan, M. (1975). Consideration of the possibility that the slow step in protein denaturation reactions is due to cis-trans isomerism of proline residues. Biochemistry 14, 4953-4963.
34. Nall, B.T. (1994). Proline isomerization as a rate-limiting step. In Mechanisms of Protein Folding. (B.D. Harnes & D.M. Glover, eds), pp. 80-103, Oxford University Press, New York.
35. Gruner, S.M. (1985). Intrinsic curvature hypothesis for biomembrane lipid composition: a role for nonbilayer lipids. Proc. Natl Acad. Sci. USA 82, 3665-3669.
36. Bloom, M., Evans, E. & Mouritsen, O.G. (1997). Physical-properties of the fluid lipid-bilayer component of cell membranes: a perspective. Quart. Rev. Biophys. 24, 293-397.
37. Seddon, J.M. (1990). Structure of the inverted hexagonal (Hll) phase, and non-lammellar phase transitions of lipids. Biochim. Biophys. Acta 1031, 1-69.
38. Ben-Shaul, A., Szleifer, I. & Gelbart, W.M. (1987). In Physics of Amphiphilic Layers. (J. Meunier, D. Langevin, & N. Boccara, eds), Springer Verlag, Berlin.
39. Marsh, D. (1996). Lateral pressure in membranes. Biochim. Biophys. Acta 1286, 183-223.
40. Templer, R.H., Seddon, J.M. & Warrender, N.A. (1994). Measuring the elastic parameters for inverse bicontinuous cubic phases. Biophys. Chem. 49, 1-12.
41. Landau, E.M. & Rosenbusch, J.P. (1996). Lipidic cubic phases: a novel concept for the crystallization of membrane proteins. Proc. Natl Acad. Sci. USA 93, 14532-14535.
42. Lemmon, M.A. & Engelman, D.M. (1994). Specificity and promiscuity in membrane helix interactions. Quart. Rev. Biophys. 27, 157-218.
43. MacKenzie, K.R., Prestegard, J.H. & Engelman, D.M. (1997). A transmembrane helix dimer: structure and implications. Science 276, 131-133.
44. Schreckenbach, T., Walckhoff, B. & Oesterhelt, D. (1977). Studies on the retinal-protein interaction in bacteriorhodopsin. Eur. J. Biochem. 76, 499-511.
45. Kahn, T.W., Sturtevant, J.M. & Engelman, D.M. (1992). Thermodynamic measurements of the contributions of helixconnecting loops and of retinal to the stability of bacteriorhodopsin. Biochemistry 31, 8829-8839.
46. Paulsen, H., Finkenzeller, B. & Kühlein, N. (1993). Pigments induce folding of light-harvesting chlorophyll a/b-binding protein. Eur. J. Biochem. 215, 809-817.