Phylogenetic Analysis of theArenaviridae:Patterns of Virus Evolution and Evidence for Cospeciation between Arenaviruses and Their Rodent Hosts

Molecular Phylogenetics and Evolution

Volumn 8, Issue 3, 1997, Pages 301-316

  Bowen, Michael D ^a   Peters, Clarence J ^a   Nichol, Stuart T ^a  

^a CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA;

ANIMAL; ARENAVIRUS; ARTICLE; CLASSIFICATION; GENETICS; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; RODENT; SEQUENCE HOMOLOGY; SPECIES DIFFERENCE; VIROLOGY;

ANIMALS; ARENAVIRIDAE; BASE SEQUENCE; DNA; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHYLOGENY; POLYMERASE CHAIN REACTION; RODENTIA; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY;

EID: 0031297630     PISSN: 10557903     EISSN: None     Source Type: Journal    
DOI: 10.1006/mpev.1997.0436     Document Type: Article

References (59)

1. Auperin D. D., McCormick J. B. Nucleotide sequence of the Lassa virus (Josiah strain) S genome RNA and amino acid sequence comparison of the N and GPC proteins to other arenaviruses. Virology. 168:1989;421-425.
2. Auperin D. D., Romanowski V., Galinski M., Bishop D. H. Sequencing studies of pichinde arenavirus S RNA indicate a novel coding strategy, an ambisense viral S RNA. J. Virol. 52:1984;897-904.
3. Barton L. L., Budd S. C., Morfitt W. S., Peters C. J., Ksiazek T. G., Schindler R. F., Yoshino M. T. Congenital lymphocytic choriomeningitis virus infection in twins. Ped. Infect. Dis. J. 12:1993;942-946.
4. Bibb M. J., Van Etten R. A., Wright C. T., Walberg M. W., Clayton D. A. Sequence and gene organization of mouse mitochondrial DNA. Cell. 26:1981;167-180.
5. Bowen M. D., Peters C. J., Mills J. N., Nichol S. T. Oliveros virus: A novel arenavirus from Argentina. Virology. 217:1996a;362-366.
6. Bowen M. D., Peters C. J., Nichol S. T. The phylogeny of New World (Tacaribe complex) arenaviruses. Virology. 219:1996b;285-290.
7. Bremer K. The limits of amino acid sequence data in angiosperm phylogenetic reconstruction. Evolution. 42:1988;795-803.
8. Britton-Davidian J., Catalan J., Granjon L., DuPlantier J.-M. Chromosomal phylogeny and evolution of the genusMastomys. J. Mammol. 76:1995;248-262.
9. Buchmeier M. J., Clegg J. C. S., Franze-Fernanadez M. T., Kolakofsky D., Peters C. J., Southern P. J. FamilyArenaviridae. Virus Taxonomy: Sixth Report of the International Committee on Taxonomy of Viruses. 1995;Springer-Verlag, New York. p. 319-323.
10. Buckley S. M., Casals J. Lassa fever, a new virus disease of man from West Africa. 3. Isolation and characterization of the virus. Am. J. Trop. Med. Hyg. 19:1970;680-691.
11. Casals J., Buckley S. M., Cedeno R. Antigenic properties of the arenaviruses. Bull. WHO. 52:1975;421-427.
12. Chevret P., Granjon L., DuPlantier J.-M., Denys C., Catzeflis F. M. Molecular phylogeny of thePraomys. Zool. J. Linnean Soc. 112:1994;425-442.
13. Childs J. E., Peters C. J. Ecology and epidemiology of arenaviruses and their hosts. Salvato M. S. The Arenaviridae. 1993;331-384 Plenum, New York.
14. Clegg J. C. S., Wilson S. M., Oram J. D. Nucleotide sequence of the S RNA of Lassa virus (Nigerian strain) and comparative analysis of arenavirus gene products. Virus Res. 18:1991;151-164.
15. J. C. S. Clegg, 1993, Molecular phylogeny of the arenaviruses and guide to published sequence data, The Arenaviridae, M. S. Salvato, 175, 187, Plenum, New York.
16. Downs W. G., Anderson C. R., Spence L., Aitken T. H. G., Greenhall A. H. Tacaribe virus, a new agent isolated fromArtibeus. Am. J. Trop. Med. Hyg. 12:1963;640-646.
17. Felsenstein J. Confidence limits on phylogenies: An approach using the bootstrap. Evolution. 39:1985;783-791.
18. J. Felsenstein, 1993, PHYLIP:Phylogeny Inference Package, University of Washington, Seattle, WA.
19. Franze-Fernandez M. T., Zetina C., Iapalucci S., Lucero M. A., Bouissou C., Lopez R., Rey O., Daheli M., Cohen G. N., Zakin M. M. Molecular structure and early events in the replication of Tacaribe arenavirus S RNA. Virus Res. 7:1987;309-324.
20. Fulhorst C. F., Bowen M. D., Ksiazek T. G., Rollin P. E., Nichol S. T., Kosoy M. Y., Peters C. J. Isolation and characterization of Whitewater Arroyo virus, a novel North American arenavirus. Virology. 224:1996;114-120.
21. Fulhorst C. F., Bowen M. D., Salas R. A., de Manzione N. M. C., Duno G., Utrera A., Ksiazek T. G., Peters C. J., Nichol S. T., de Miller E., Tovar D., Ramos B., Vasquez C., Tesh R. B. Isolation and characterization of Pirital virus, a novel South American arenavirus. Am. J. Trop. Med. Hyg. 56:1997;548-553.
22. Gadaleta G., Pepe G., De Candia G., Quagliariello C., Sbisa E., Saccone C. The complete nucleotide sequence of theRattus novegicus. J. Mol. Evol. 28:1989;497-516.
23. Ghiringhelli P. D., Rivera Pomar R. V., Baro N. I., Rosas M. F., Grau O., Romanowski V. Nucleocapsid protein gene of Junin arenavirus (cDNA sequence). Nucleic Acids Res. 17:1989;8001.
24. Ghiringhelli P. D., Rivera-Pomar R. V., Lozano M. E., Grau O., Romanowski V. Molecular organization of Junin virus S RNA: Complete nucleotide sequence, relationship with other members of the Arenaviridae and unusual secondary structures. J. Gen. Virol. 72:1991;2129-2141.
25. Gonzalez J. P., Bowen M. D., Nichol S. T., Rico-Hesse R. Genetic characterization and phylogeny of Sabia virus, an emergent pathogen in Brazil. Virology. 221:1996;318-324.
26. Gonzalez J. P., Georges A. J., Kiley M. P., Meunier D. M., Peters C. J., McCormick J. B. Evolutionary biology of a Lassa virus complex. Med. Microbiol. Immun. 175:1986;157-159.
27. Gonzalez J. P., McCormick J. B., Saluzzo J. F., Herve J. P., Georges A. J., Johnson K. M. An arenavirus isolated from wild-caught rodents (Praomys. Intervirology. 19:1983;105-112.
28. Griffiths C. M., Wilson S. M., Clegg J. C. Sequence of the nucleocapsid protein gene of Machupo virus: Close relationship with another South American pathogenic arenavirus, Junin. Arch. Virol. 124:1992;371-377.
29. Grundy D. J., Bowen E. T., Lloyd G. Isolated case of Lassa fever in Zaria, Northern Nigeria. Lancet. 2:1980;649-650.
30. Howard C. R. Arenaviruses. 1986;Elsevier, Amsterdam.
31. Howard C. R., Lewicki H., Allison L., Salter M., Buchmeier M. J. Properties and characterization of monoclonal antibodies to Tacaribe virus. J. Gen. Virol. 66:1985;1383-1395.
32. Huelsenbeck J. P. Performance of phylogenetic methods in simulation. Syst. Biol. 44:1995;17-48.
33. Jahrling P. B., Peters C. J. Lymphocytic choriomeningitis virus. A neglected pathogen of man [editorial]. Arch. Pathol. Lab. Med. 116:1992;486-488.
34. Johnson K. M., Webb P. A., Justines G. Biology of Tacribe-complex viruses. Lehmann-Grube F. Lymphocytic Choriomeningitis Virus and Other Arenaviruses. 1973;241-258 Springer-Verlag, Berlin.
35. Kimura M. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
36. Kishino H., Hasegawa M. Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in Hominoidea. J. Mol. Evol. 29:1989;170-179.
37. S. Kumar, K. Tamura, M. Nei, 1993, MEGA: Molecular Evolutionary Genetics Analysis, Pennsylvania State Univ. University Park, PA.
38. W. P. Maddison, D. R. Maddison, 1992, MacClade: Analysis of Phylogeny and Character Evolution, Sinauer, Sunderland, MA.
39. Martinez Peralta L. A., Coto C., Weissenbacher M. C. The Tacaribe complex: The close relationship between a pathogenic (Junin) and a nonpathogenic (Tacaribe) arenavirus. Salvato M. S. The Arenaviridae. 1993;281-298 Plenum, New York.
40. McCormick J. B., Webb P. A., Krebs J. W., Johnson K. M., Smith E. S. A prospective study of the epidemiology and ecology of Lassa fever. J. Infect. Dis. 155:1987;437-444.
41. Musser G. G., Carleton M. D. Family Muridae. Wilson D. E., Reeder D. M. Mammal Species of the World. 1993;501-755 Smithsonian Institution, Washington.
42. Myers P., Lundrigan B., Tucker P. K. Molecular phylogenetics of the Oryzomyine rodents: The genusOligoryzomys. Mol. Phylogenet. Evol. 4:1995;372-382.
43. Patton J. L., da Silva M. N. F. A review of the spiny mouse genusScolomys. Proc. Biol. Soc. Wash. 108:1995;319-337.
44. Peters C. J. Arenavirus infections. McKendall R. R., Stroop W. G. Handbook of Neurovirology. 1994;621-637 Marcel Dekker, New York.
45. Peters C. J., Buchmeier M., Rollin P. E., Ksiazek T. G. Arenaviruses. Fields B. N., Knipe D. M., Howley P. M. Fields Virology. 1996;1521-1551 Lippincott-Raven, Philadelphia.
46. Pinheiro F. P., Shope R. E., Paes de Andrade A. H., Bensabath G., Cacios G. V., Casals J. Amapari, a new virus of the Tacaribe group from rodents and mites of Amapa Territory, Brazil. Proc. Soc. Exp. Biol. Med. 122:1966;531-535.
47. Pinheiro F. P., Woodall J. P., Travassos da Rosa A. P. A., Travassos da Rosa J. F. Studies on arenaviruses in Brazil. Medicina (Buenos Aires). 37:1977;175-181.
48. Robbins C. B., Krebs J. W., Johnson K. M. Mastomys. Am. J. Trop. Med. Hyg. 32:1983;624-630.
49. Romanowski V., Matsuura Y., Bishop D. H. Complete sequence of the S RNA of lymphocytic choriomeningitis virus (WE strain) compared to that of Pichinde arenavirus. Virus Res. 3:1985;101-114.
50. Ruo S. L., Mitchell S. W., Kiley M. P., Roumillat L. F., Fisher-Hoch S. P., McCormick J. B. Antigenic relatedness between arenaviruses defined at the epitope level by monoclonal antibodies. J. Gen. Virol. 72:1991;549-555.
51. Salvato M., Shimomaye E., Southern P., Oldstone M. B. Virus-lymphocyte interactions. IV. Molecular characterization of LCMV Armstrong (CTL+) small genomic segment and that of its variant, Clone 13 (CTL-). Virology. 164:1988;517-522.
52. Sanchez A., Pifat D. Y., Kenyon R. H., Peters C. J., McCormick J. B., Kiley M. P. Junin virus monoclonal antibodies: characterization and cross-reactivity with other arenaviruses. J. Gen. Virol. 70:1989;1125-1132.
53. Smith M. F., Patton J. L. The diversification of South American murid rodents: Evidence from mitochondrial DNA sequence data for the akodontine tribe. Biol. J. Linnean Soc. 50:1993;149-177.
54. Spence L., Jonkers A. H., Grant L. S. Arboviruses in the Caribbean Islands. Progr. Med. Virol. 10:1968;415-486.
55. Steppan S. J. Revision of the Tribe Phyllotini (Rodentia: Sigmodontinae), with a phylogenetic hypothesis for the Sigmodontinae. Fieldiana Zool. 80:1995;1-112.
56. D. L. Swofford, 1993, PAUP: Phylogenetic Analysis Using Parsimony, Smithsonian Institution, Washington, DC.
57. Swofford D. L., Olsen G. J., Waddell P. J., Hillis D. M. Phylogenetic Inference. Hillis D. M., Moritz C., Mable B. K. Molecular Systematics. 1996;407-514 Sinauer, Sunderland.
58. Wilson S. M., Clegg J. C. Sequence analysis of the S RNA of the African arenavirus Mopeia: An unusual secondary structure feature in the intergenic region. Virology. 180:1991;543-552.
59. Wulff H., Lange J. V., Webb P. A. Interrelationships among arenaviruses measured by indirect immunofluorescence. Intervirology. 9:1978;344-350.